Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for GABRA1

Gene Name Gene ID Reads Annotation
GABRA1 ENSGALG00000001698 120 gamma-aminobutyric acid type A receptor alpha1 subunit [Source:NCBI gene;Acc:374214]











Genes with expression patterns similar to GABRA1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. GABRA1 ENSGALG00000001698 120 7 - - 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 gamma-aminobutyric acid type A receptor alpha1 subunit [Source:NCBI gene;Acc:374214]
2. MAP3K8 ENSGALG00000007356 188 1.443 - - 0.729 - - 0.714 - - - - mitogen-activated protein kinase kinase kinase 8 [Source:HGNC Symbol;Acc:HGNC:6860]
3. KPNA5 ENSGALG00000014937 28 0.935 - - 0.935 - - - - - - - karyopherin subunit alpha 5 [Source:HGNC Symbol;Acc:HGNC:6398]
4. C15orf60 C15orf60 16 0.935 - - 0.935 - - - - - - -
5. LLGL1 ENSGALG00000014408 15 0.932 - - 0.932 - - - - - - - LLGL1, scribble cell polarity complex component [Source:HGNC Symbol;Acc:HGNC:6628]
6. DNALI1 ENSGALG00000001996 64 0.931 - - 0.931 - - - - - - - dynein axonemal light intermediate chain 1 [Source:HGNC Symbol;Acc:HGNC:14353]
7. PRC1 ENSGALG00000012836 20 0.927 - - 0.927 - - - - - - - protein regulator of cytokinesis 1 [Source:NCBI gene;Acc:770336]
8. AHR2 ENSGALG00000023742 21 0.925 - - 0.925 - - - - - - - Gallus gallus aryl hydrocarbon receptor 2 (AHR2), mRNA. [Source:RefSeq mRNA;Acc:NM_001319008]
9. ENSGALG00000005723 ENSGALG00000005723 36 0.925 - - 0.925 - - - - - - -
10. FAM3B ENSGALG00000016140 111 0.925 - - 0.925 - - - - - - - family with sequence similarity 3 member B [Source:HGNC Symbol;Acc:HGNC:1253]
11. EPHA1 ENSGALG00000014687 174 0.925 - - 0.925 - - - - - - - EPH receptor A1 [Source:NCBI gene;Acc:378782]
12. EML5 ENSGALG00000010639 25 0.924 - - 0.924 - - - - - - - echinoderm microtubule associated protein like 5, transcript variant X1
13. GALNT11 ENSGALG00000006233 210 0.924 - - 0.924 - - - - - - - polypeptide N-acetylgalactosaminyltransferase 11 [Source:HGNC Symbol;Acc:HGNC:19875]
14. ATXN3 ENSGALG00000010766 48 0.922 - - 0.922 - - - - - - - ataxin 3 [Source:NCBI gene;Acc:378424]
15. SEC22C ENSGALG00000005268 1151 0.921 - - 0.921 - - - - - - - SEC22 homolog C, vesicle trafficking protein [Source:HGNC Symbol;Acc:HGNC:16828]
16. TOX3 ENSGALG00000034649 54 0.92 - - 0.920 - - - - - - - TOX high mobility group box family member 3 [Source:NCBI gene;Acc:415724]
17. PHTF2 ENSGALG00000008335 722 0.919 - - 0.919 - - - - - - - putative homeodomain transcription factor 2 [Source:NCBI gene;Acc:417728]
18. ACSF3 ENSGALG00000035225 261 0.919 - - 0.919 - - - - - - - acyl-CoA synthetase family member 3 [Source:HGNC Symbol;Acc:HGNC:27288]
19. ZZEF1 ENSGALG00000001546 767 0.913 - - 0.913 - - - - - - - zinc finger ZZ-type and EF-hand domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29027]
20. OTOA ENSGALG00000007070 94 0.912 - - 0.912 - - - - - - - otoancorin [Source:HGNC Symbol;Acc:HGNC:16378]
21. SCNM1 ENSGALG00000046607 665 0.912 - - 0.912 - - - - - - - sodium channel modifier 1 [Source:HGNC Symbol;Acc:HGNC:23136]
22. gga-mir-6561 ENSGALG00000026650 135 0.911 - - 0.911 - - - - - - - gga-mir-6561 [Source:miRBase;Acc:MI0022379]
23. FSCN2 ENSGALG00000023354 13 0.91 - - 0.910 - - - - - - - fascin actin-bundling protein 2, retinal [Source:NCBI gene;Acc:429198]
24. CD300A CD300A 173 0.908 - - 0.908 - - - - - - -
25. RAB11FIP1 41 0.905 - - 0.905 - - - - - - - RAB11 family interacting protein 1, transcript variant X2
26. ALKBH8 ENSGALG00000017170 699 0.902 - - 0.902 - - - - - - - alkB homolog 8, tRNA methyltransferase [Source:HGNC Symbol;Acc:HGNC:25189]
27. ENSGALG00000028778 ENSGALG00000028778 47 0.901 - - 0.901 - - - - - - -
28. PDZK1IP1 ENSGALG00000010473 551 0.901 - - 0.901 - - - - - - - PDZK1 interacting protein 1 [Source:NCBI gene;Acc:424619]
29. DLX6 ENSGALG00000023195 29 0.9 - - 0.900 - - - - - - - distal-less homeobox 6 [Source:NCBI gene;Acc:772070]
30. FAM199X ENSGALG00000008872 44 0.896 - - 0.896 - - - - - - - family with sequence similarity 199, X-linked [Source:HGNC Symbol;Acc:HGNC:25195]
31. CREB3 ENSGALG00000002523 23 0.895 - - 0.895 - - - - - - - cAMP responsive element binding protein 3 [Source:HGNC Symbol;Acc:HGNC:2347]
32. BMP2K ENSGALG00000010885 37 0.894 - - 0.894 - - - - - - - BMP2 inducible kinase [Source:HGNC Symbol;Acc:HGNC:18041]
33. SCN5A ENSGALG00000006112 137 0.891 - - 0.891 - - - - - - - Gallus gallus sodium voltage-gated channel alpha subunit 5 (SCN5A), mRNA. [Source:RefSeq mRNA;Acc:NM_001318446]
34. PKD2 ENSGALG00000010921 55 0.889 - - 0.889 - - - - - - - polycystin 2, transient receptor potential cation channel [Source:NCBI gene;Acc:422585]
35. NUDT4 ENSGALG00000011285 2998 0.887 - - 0.887 - - - - - - - nudix hydrolase 4, transcript variant X5
36. CNKSR1 ENSGALG00000046299 195 0.886 - - 0.886 - - - - - - - connector enhancer of kinase suppressor of Ras 1 [Source:HGNC Symbol;Acc:HGNC:19700]
37. DFFB ENSGALG00000036295 88 0.883 - - 0.883 - - - - - - - DNA fragmentation factor subunit beta [Source:NCBI gene;Acc:374158]
38. FAM46A ENSGALG00000035903 891 0.882 - - 0.882 - - - - - - - family with sequence similarity 46 member A [Source:NCBI gene;Acc:421845]
39. WASF2 ENSGALG00000014012 30 0.877 - - - - - 0.877 - - - - WAS protein family member 2 [Source:HGNC Symbol;Acc:HGNC:12733]
40. PRKCE ENSGALG00000010000 99 0.877 - - 0.877 - - - - - - - protein kinase C epsilon, transcript variant X1
41. ENSGALG00000004127 ENSGALG00000004127 566 0.876 - - 0.876 - - - - - - -
42. FANCB ENSGALG00000016569 1193 0.873 - - 0.873 - - - - - - - FA complementation group B [Source:NCBI gene;Acc:418628]
43. PIP5K1C ENSGALG00000000784 492 0.871 - - 0.871 - - - - - - - Gallus gallus phosphatidylinositol-4-phosphate 5-kinase, type I, gamma (PIP5K1C), mRNA. [Source:RefSeq mRNA;Acc:NM_001319021]
44. KIDINS220 ENSGALG00000016409 854 0.871 - - 0.871 - - - - - - - kinase D interacting substrate 220 [Source:HGNC Symbol;Acc:HGNC:29508]
45. PLA2G10L ENSGALG00000019233 11 0.868 - - - - - 0.868 - - - - phospholipase A2 group X-like, transcript variant X2
46. TMEM132B ENSGALG00000002742 122 0.868 - - 0.868 - - - - - - - transmembrane protein 132B [Source:HGNC Symbol;Acc:HGNC:29397]
47. MIS12 ENSGALG00000001632 372 0.867 - - 0.867 - - - - - - - MIS12, kinetochore complex component [Source:NCBI gene;Acc:693254]
48. TBC1D8B ENSGALG00000009040 75 0.866 - - 0.866 - - - - - - - TBC1 domain family member 8B [Source:HGNC Symbol;Acc:HGNC:24715]
49. ENSGALG00000026925 ENSGALG00000026925 119 0.865 - - 0.865 - - - - - - -
50. FMN2 ENSGALG00000031427 77 0.864 - - 0.864 - - - - - - - formin 2 [Source:HGNC Symbol;Acc:HGNC:14074]
51. PLXNB2 ENSGALG00000039861 338 0.861 - - 0.861 - - - - - - - plexin B2 [Source:HGNC Symbol;Acc:HGNC:9104]
52. NHLRC2 ENSGALG00000008946 387 0.861 - - 0.861 - - - - - - - NHL repeat containing 2 [Source:NCBI gene;Acc:423903]
53. VAMP3 ENSGALG00000000579 720 0.86 - - 0.860 - - - - - - - vesicle-associated membrane protein 3 [Source:NCBI gene;Acc:419368]
54. DIXDC1 ENSGALG00000007929 67 0.859 - - 0.859 - - - - - - - DIX domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23695]
55. KLF6 ENSGALG00000033178 679 0.859 - - 0.859 - - - - - - - Kruppel like factor 6 [Source:NCBI gene;Acc:420463]
56. RIPK4 ENSGALG00000040189 102 0.858 - - 0.858 - - - - - - - receptor interacting serine/threonine kinase 4 [Source:HGNC Symbol;Acc:HGNC:496]
57. DVL3 ENSGALG00000008414 38 0.851 - - 0.851 - - - - - - - dishevelled segment polarity protein 3 [Source:HGNC Symbol;Acc:HGNC:3087]
58. ENSGALG00000011942 ENSGALG00000011942 175 0.851 - - 0.851 - - - - - - -
59. APH1A ENSGALG00000045163 146 0.847 - - 0.847 - - - - - - - aph-1 homolog A, gamma-secretase subunit [Source:HGNC Symbol;Acc:HGNC:29509]
60. CCDC135 CCDC135 220 0.847 - - 0.847 - - - - - - -
61. STXBP1 ENSGALG00000040003 157 0.846 - - 0.846 - - - - - - - syntaxin binding protein 1 [Source:NCBI gene;Acc:404293]
62. VWDE ENSGALG00000042443 160 0.844 - - 0.844 - - - - - - - von Willebrand factor D and EGF domains [Source:HGNC Symbol;Acc:HGNC:21897]
63. WDR5 ENSGALG00000002659 13008 0.842 - - 0.842 - - - - - - - WD repeat domain 5 [Source:NCBI gene;Acc:417144]
64. THNSL1 ENSGALG00000007677 287 0.841 - - 0.841 - - - - - - - threonine synthase like 1 [Source:HGNC Symbol;Acc:HGNC:26160]
65. DYNLRB2 ENSGALG00000005402 630 0.839 - - 0.839 - - - - - - - dynein light chain roadblock-type 2 [Source:NCBI gene;Acc:415802]
66. C1H11ORF70 ENSGALG00000017189 395 0.835 - - 0.835 - - - - - - - chromosome 1 open reading frame, human C11orf70 [Source:NCBI gene;Acc:418985]
67. SIRT5 ENSGALG00000012692 3196 0.833 - - - - - 0.833 - - - - sirtuin 5 [Source:NCBI gene;Acc:420834]
68. C26H6ORF89 C26H6ORF89 1826 0.831 - - 0.831 - - - - - - -
69. MST4 MST4 1931 0.83 - - 0.830 - - - - - - -
70. PRDM10 632 0.83 - - 0.830 - - - - - - - PR domain 10, transcript variant X10
71. NRXN1 ENSGALG00000009107 277 0.828 - - 0.828 - - - - - - - neurexin 1 [Source:NCBI gene;Acc:395398]
72. MTMR14 ENSGALG00000006601 1435 0.824 - - 0.824 - - - - - - - myotubularin related protein 14 [Source:NCBI gene;Acc:416048]
73. ABCC1 ENSGALG00000006646 2596 0.823 - - 0.823 - - - - - - - ATP binding cassette subfamily C member 1 [Source:NCBI gene;Acc:395416]
74. ANO5 ENSGALG00000003748 3959 0.819 - - 0.819 - - - - - - - anoctamin 5 [Source:NCBI gene;Acc:422973]
75. MKP3 MKP3 4418 0.818 - - 0.818 - - - - - - -
76. BRWD3 ENSGALG00000007151 3495 0.812 - - 0.812 - - - - - - - bromodomain and WD repeat domain containing 3 [Source:HGNC Symbol;Acc:HGNC:17342]
77. ZDHHC8 ENSGALG00000002124 35 0.812 - - - - - 0.812 - - - - zinc finger DHHC-type containing 8 [Source:NCBI gene;Acc:416788]
78. CCDC51 ENSGALG00000006465 1845 0.811 - - 0.811 - - - - - - - coiled-coil domain containing 51, transcript variant X1
79. CNP1 ENSGALG00000028638 56 0.811 - - 0.811 - - - - - - - C-type natriuretic peptide 1 [Source:NCBI gene;Acc:100499455]
80. NUBPL ENSGALG00000009983 3328 0.81 - - 0.810 - - - - - - - nucleotide binding protein like [Source:HGNC Symbol;Acc:HGNC:20278]
81. P2RY4 ENSGALG00000004346 11 0.809 - - - - - - - 0.809 - - pyrimidinergic receptor P2Y4 [Source:HGNC Symbol;Acc:HGNC:8542]
82. FGGY ENSGALG00000010879 1279 0.808 - - 0.808 - - - - - - - FGGY carbohydrate kinase domain containing [Source:HGNC Symbol;Acc:HGNC:25610]
83. SNED1 ENSGALG00000043596 693 0.808 - - 0.808 - - - - - - - sushi, nidogen and EGF like domains 1 [Source:HGNC Symbol;Acc:HGNC:24696]
84. TEX264 ENSGALG00000003832 3053 0.806 - - 0.806 - - - - - - - testis expressed 264 [Source:NCBI gene;Acc:415938]
85. BECN1 ENSGALG00000002973 1569 0.804 - - 0.804 - - - - - - - beclin 1 [Source:NCBI gene;Acc:420018]
86. ZC4H2 ENSGALG00000042725 361 0.798 - - 0.798 - - - - - - - zinc finger C4H2-type containing, transcript variant X4
87. HSPH1 ENSGALG00000017077 735 0.795 - - 0.795 - - - - - - - heat shock protein family H (Hsp110) member 1 [Source:NCBI gene;Acc:418917]
88. VTI1B ENSGALG00000009526 133 0.795 - - 0.795 - - - - - - - vesicle transport through interaction with t-SNAREs 1B [Source:HGNC Symbol;Acc:HGNC:17793]
89. ECHDC2 ENSGALG00000010647 4413 0.793 - - 0.793 - - - - - - - enoyl-CoA hydratase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23408]
90. HPS3 ENSGALG00000040089 44 0.791 - - 0.791 - - - - - - - HPS3, biogenesis of lysosomal organelles complex 2 subunit 1 [Source:HGNC Symbol;Acc:HGNC:15597]
91. SIL1 ENSGALG00000002457 147 0.79 - - 0.790 - - - - - - - SIL1 nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:24624]
92. VTN ENSGALG00000003589 2873 0.789 - - - - - - - - - 0.789 vitronectin [Source:NCBI gene;Acc:395935]
93. COLGALT2 ENSGALG00000038320 854 0.789 - - 0.789 - - - - - - - collagen beta(1-O)galactosyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:16790]
94. EMP2 ENSGALG00000027058 3925 0.788 - - 0.788 - - - - - - - epithelial membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:3334]
95. NMNAT1 ENSGALG00000043318 471 0.788 - - 0.788 - - - - - - - nicotinamide nucleotide adenylyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:17877]
96. DUSP1 ENSGALG00000040360 2129 0.784 - - 0.784 - - - - - - - dual specificity phosphatase 1 [Source:NCBI gene;Acc:374192]
97. RCAN1 ENSGALG00000016014 95 0.783 - - 0.783 - - - - - - - regulator of calcineurin 1 [Source:NCBI gene;Acc:418510]
98. PYGO1 ENSGALG00000004369 527 0.781 - - 0.781 - - - - - - - pygopus family PHD finger 1 [Source:NCBI gene;Acc:415408]
99. CPSF2 ENSGALG00000010783 5236 0.78 - - 0.780 - - - - - - - cleavage and polyadenylation specific factor 2 [Source:NCBI gene;Acc:423416]
100. TBC1D5 ENSGALG00000011251 287 0.78 - - 0.780 - - - - - - - TBC1 domain family member 5 [Source:HGNC Symbol;Acc:HGNC:19166]

There are 101 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA