Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for CDK9

Gene Name Gene ID Reads Annotation
CDK9 ENSGALG00000035576 3659 cyclin dependent kinase 9 [Source:NCBI gene;Acc:417226]











Genes with expression patterns similar to CDK9

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. CDK9 ENSGALG00000035576 3659 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 cyclin dependent kinase 9 [Source:NCBI gene;Acc:417226]
2. PSMC5 ENSGALG00000000349 21346 1.816 - - 0.832 - - - - 0.984 - - proteasome 26S subunit, ATPase 5 [Source:NCBI gene;Acc:428274]
3. TMEM200C ENSGALG00000030210 1434 1.63 - - 0.777 - - - - 0.853 - - transmembrane protein 200C [Source:HGNC Symbol;Acc:HGNC:37208]
4. C1orf50 ENSGALG00000004800 4894 1.619 - - 0.803 - - - - - 0.816 - chromosome 1 open reading frame 50 [Source:HGNC Symbol;Acc:HGNC:28795]
5. GNMT ENSGALG00000043290 3288 1.617 - - 0.875 - - - - - 0.742 - glycine N-methyltransferase [Source:HGNC Symbol;Acc:HGNC:4415]
6. IVD ENSGALG00000040267 5820 1.591 - - 0.752 - - - - 0.839 - - isovaleryl-CoA dehydrogenase [Source:NCBI gene;Acc:423011]
7. TMEM38B ENSGALG00000027472 2465 1.581 - - 0.846 - - - - - 0.735 - transmembrane protein 38B [Source:HGNC Symbol;Acc:HGNC:25535]
8. TAF15 ENSGALG00000002060 12320 1.546 - - - - - - 0.809 - 0.737 - TATA-box binding protein associated factor 15 [Source:HGNC Symbol;Acc:HGNC:11547]
9. KLHL15 ENSGALG00000016345 1638 1.546 - - 0.810 - - - - - 0.736 - kelch like family member 15 [Source:NCBI gene;Acc:418598]
10. BLCAP ENSGALG00000027126 12200 1.537 - - 0.702 - - - - 0.835 - - BLCAP, apoptosis inducing factor [Source:NCBI gene;Acc:100857695]
11. TSN ENSGALG00000011652 905 1.53 - - 0.819 - - - - - 0.711 - translin [Source:NCBI gene;Acc:395955]
12. MRPL37 ENSGALG00000010761 10596 1.516 - - - - - - 0.752 0.764 - - mitochondrial ribosomal protein L37 [Source:NCBI gene;Acc:772313]
13. RUFY2 1442 1.516 - - 0.785 - - - - - 0.731 - RUN and FYVE domain containing 2, transcript variant X1
14. KIAA0196 KIAA0196 4011 1.505 - - 0.752 - - - 0.753 - - -
15. SNX2 ENSGALG00000005337 590 1.501 - - 0.786 - - - - - 0.715 - sorting nexin 2 [Source:NCBI gene;Acc:426797]
16. WDR47 ENSGALG00000002129 2624 1.482 - - 0.724 - - - - - 0.758 - WD repeat domain 47 [Source:HGNC Symbol;Acc:HGNC:29141]
17. INPP5F ENSGALG00000009445 1911 1.478 - - 0.778 - - - - - 0.700 - inositol polyphosphate-5-phosphatase F [Source:HGNC Symbol;Acc:HGNC:17054]
18. FABP5 ENSGALG00000041344 3984 1.473 - - 0.737 - - - 0.736 - - - fatty acid binding protein 5 [Source:NCBI gene;Acc:420197]
19. SPEN ENSGALG00000036932 9688 1.431 - - - - - - 0.721 0.710 - - spen family transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:17575]
20. FBXW11 ENSGALG00000002229 5805 0.992 - - - - - - - 0.992 - - F-box and WD repeat domain containing 11 [Source:NCBI gene;Acc:416181]
21. ACBD3 ENSGALG00000009246 8405 0.98 - - - - - - - 0.980 - - acyl-CoA binding domain containing 3 [Source:NCBI gene;Acc:421317]
22. EDF1 ENSGALG00000038003 6757 0.974 - - - - - - - 0.974 - - endothelial differentiation related factor 1 [Source:NCBI gene;Acc:417286]
23. KLHL18 ENSGALG00000005582 3053 0.965 - - - - - - - 0.965 - - kelch like family member 18 [Source:NCBI gene;Acc:420406]
24. TMEM167A ENSGALG00000027332 13862 0.948 - - - - - - - 0.948 - - transmembrane protein 167A [Source:NCBI gene;Acc:770790]
25. COPG COPG 6949 0.926 - - - - - - - 0.926 - -
26. ENSGALG00000004931 ENSGALG00000004931 2737 0.922 - - - - - - - 0.922 - -
27. MRPS15 ENSGALG00000044433 15356 0.915 - - - - - - - 0.915 - - mitochondrial ribosomal protein S15 [Source:HGNC Symbol;Acc:HGNC:14504]
28. MRPL42 ENSGALG00000011293 15145 0.893 - - - - - - - 0.893 - - mitochondrial ribosomal protein L42 [Source:HGNC Symbol;Acc:HGNC:14493]
29. LSM4 ENSGALG00000003385 4050 0.891 - - 0.891 - - - - - - - LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:HGNC Symbol;Acc:HGNC:17259]
30. MRPL40 ENSGALG00000001587 20893 0.891 - - - - - - - 0.891 - - mitochondrial ribosomal protein L40 [Source:HGNC Symbol;Acc:HGNC:14491]
31. BUB1 ENSGALG00000008233 11536 0.889 - - - - - - - 0.889 - - BUB1 mitotic checkpoint serine/threonine kinase [Source:NCBI gene;Acc:421226]
32. PREP ENSGALG00000015405 17050 0.886 - - - - - - - 0.886 - - prolyl endopeptidase [Source:NCBI gene;Acc:421785]
33. FBF1 ENSGALG00000002179 1738 0.876 - - 0.876 - - - - - - - Fas binding factor 1 [Source:NCBI gene;Acc:770159]
34. DSCR3 3583 0.872 - - 0.872 - - - - - - - DSCR3 arrestin fold containing, transcript variant X1
35. MYO18A ENSGALG00000003741 1023 0.869 - - 0.869 - - - - - - - myosin XVIIIA [Source:HGNC Symbol;Acc:HGNC:31104]
36. ATG10 ENSGALG00000027714 1100 0.869 - - 0.869 - - - - - - - autophagy related 10 [Source:HGNC Symbol;Acc:HGNC:20315]
37. CCDC25 ENSGALG00000016586 351 0.867 - - 0.867 - - - - - - - coiled-coil domain containing 25 [Source:HGNC Symbol;Acc:HGNC:25591]
38. CDV3 ENSGALG00000032316 693 0.862 - - 0.862 - - - - - - - CDV3 homolog [Source:NCBI gene;Acc:420693]
39. ZNF276 ENSGALG00000000513 2410 0.861 - - 0.861 - - - - - - - zinc finger protein 276 [Source:HGNC Symbol;Acc:HGNC:23330]
40. LRP2 ENSGALG00000010858 363 0.86 - - 0.860 - - - - - - - LDL receptor related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
41. TXNDC12 ENSGALG00000010569 13822 0.858 - - 0.858 - - - - - - - thioredoxin domain containing 12 [Source:NCBI gene;Acc:772208]
42. ARHGEF18 ENSGALG00000003572 224 0.857 - - - - - - - 0.857 - - Rho/Rac guanine nucleotide exchange factor 18, transcript variant X1
43. CCDC15 1759 0.857 - - - - - - - 0.857 - - coiled-coil domain containing 15
44. IP6K1 ENSGALG00000002510 827 0.857 - - 0.857 - - - - - - - inositol hexakisphosphate kinase 1 [Source:HGNC Symbol;Acc:HGNC:18360]
45. ENSGALG00000006278 ENSGALG00000006278 202 0.857 - - - - - - - 0.857 - -
46. EFR3B ENSGALG00000016605 234 0.857 - - - - - - - 0.857 - - EFR3 homolog B [Source:HGNC Symbol;Acc:HGNC:29155]
47. KIF1A ENSGALG00000006221 1989 0.857 - - - - - - - 0.857 - - kinesin family member 1A [Source:HGNC Symbol;Acc:HGNC:888]
48. USP40 ENSGALG00000004228 1137 0.857 - - 0.857 - - - - - - - ubiquitin specific peptidase 40 [Source:NCBI gene;Acc:100859211]
49. FAXDC2 ENSGALG00000003972 172 0.857 - - - - - - - 0.857 - - fatty acid hydroxylase domain containing 2 [Source:NCBI gene;Acc:416256]
50. SYNM ENSGALG00000007048 705 0.856 - - - - - - - 0.856 - - synemin [Source:NCBI gene;Acc:395599]
51. ADAMTS2 ENSGALG00000032974 141 0.856 - - 0.856 - - - - - - - ADAM metallopeptidase with thrombospondin type 1 motif 2 [Source:HGNC Symbol;Acc:HGNC:218]
52. TNNI1 ENSGALG00000000313 4069 0.856 - - - - - - - 0.856 - - troponin I1, slow skeletal type [Source:HGNC Symbol;Acc:HGNC:11945]
53. SORCS1 ENSGALG00000008465 468 0.856 - - 0.856 - - - - - - - sortilin related VPS10 domain containing receptor 1 [Source:HGNC Symbol;Acc:HGNC:16697]
54. KCNK2 ENSGALG00000009687 1552 0.855 - - - - - - - 0.855 - - potassium two pore domain channel subfamily K member 2 [Source:HGNC Symbol;Acc:HGNC:6277]
55. ZEB2 ENSGALG00000040465 315 0.855 - - 0.855 - - - - - - - Gallus gallus zinc finger E-box binding homeobox 2 (ZEB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001318466]
56. ACOT9 ENSGALG00000016351 330 0.855 - - 0.855 - - - - - - - acyl-CoA thioesterase 9 [Source:NCBI gene;Acc:418600]
57. ADAMTS6 ENSGALG00000014751 1293 0.855 - - - - - - - 0.855 - - ADAM metallopeptidase with thrombospondin type 1 motif 6 [Source:HGNC Symbol;Acc:HGNC:222]
58. FSBP 3152 0.854 - - - - - - - 0.854 - - fibrinogen silencer binding protein
59. CNPY3 ENSGALG00000028471 1413 0.854 - - - - - - - 0.854 - - canopy FGF signaling regulator 3 [Source:HGNC Symbol;Acc:HGNC:11968]
60. MGMT ENSGALG00000042949 53 0.854 - - 0.854 - - - - - - - O-6-methylguanine-DNA methyltransferase [Source:HGNC Symbol;Acc:HGNC:7059]
61. RAC2 ENSGALG00000012456 987 0.854 - - - - - - - 0.854 - - Rac family small GTPase 2 [Source:NCBI gene;Acc:418044]
62. RAD52 ENSGALG00000039171 6989 0.853 - - - - - - - 0.853 - - RAD52 homolog, DNA repair protein [Source:NCBI gene;Acc:418152]
63. ENSGALG00000002852 ENSGALG00000002852 2687 0.853 - - - - - - - 0.853 - -
64. TMEM97 ENSGALG00000005702 2037 0.853 - - 0.853 - - - - - - - transmembrane protein 97 [Source:HGNC Symbol;Acc:HGNC:28106]
65. PRDM6 ENSGALG00000005351 2078 0.853 - - - - - - - 0.853 - - PR/SET domain 6 [Source:HGNC Symbol;Acc:HGNC:9350]
66. FRMD3 ENSGALG00000012577 999 0.853 - - 0.853 - - - - - - - FERM domain containing 3 [Source:HGNC Symbol;Acc:HGNC:24125]
67. FAM134A 1600 0.853 - - 0.853 - - - - - - - family with sequence similarity 134 member A
68. MIEN1 ENSGALG00000026328 3396 0.853 - - - - - - - 0.853 - - migration and invasion enhancer 1 [Source:HGNC Symbol;Acc:HGNC:28230]
69. NEO1 ENSGALG00000001774 10165 0.852 - - - - - - - 0.852 - - neogenin 1 [Source:HGNC Symbol;Acc:HGNC:7754]
70. MT1 MT1 218 0.852 - - 0.852 - - - - - - -
71. MPG ENSGALG00000028691 1874 0.852 - - 0.852 - - - - - - - N-methylpurine DNA glycosylase [Source:HGNC Symbol;Acc:HGNC:7211]
72. DIMT1 ENSGALG00000020569 5150 0.852 - - - - - - - 0.852 - - DIM1 dimethyladenosine transferase 1 homolog [Source:HGNC Symbol;Acc:HGNC:30217]
73. PIGB ENSGALG00000037734 2193 0.851 - - - - - - - 0.851 - - phosphatidylinositol glycan anchor biosynthesis class B [Source:HGNC Symbol;Acc:HGNC:8959]
74. RAB20 ENSGALG00000016844 3250 0.851 - - - - - - - 0.851 - - RAB20, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:18260]
75. ALG14 ENSGALG00000005583 2008 0.851 - - 0.851 - - - - - - - ALG14, UDP-N-acetylglucosaminyltransferase subunit [Source:NCBI gene;Acc:424484]
76. MAN1A1 ENSGALG00000014878 1061 0.85 - - 0.850 - - - - - - - mannosidase alpha class 1A member 1 [Source:HGNC Symbol;Acc:HGNC:6821]
77. AXIN1 ENSGALG00000029402 2802 0.85 - - 0.850 - - - - - - - axin 1 [Source:NCBI gene;Acc:395786]
78. ENSGALG00000023180 ENSGALG00000023180 83 0.85 - - 0.850 - - - - - - -
79. AP3M1 ENSGALG00000005070 712 0.849 - - 0.849 - - - - - - - adaptor related protein complex 3 subunit mu 1 [Source:NCBI gene;Acc:423736]
80. PHF2 ENSGALG00000039208 2003 0.849 - - 0.849 - - - - - - - PHD finger protein 2 [Source:HGNC Symbol;Acc:HGNC:8920]
81. SULF1 ENSGALG00000039553 5115 0.848 - - - - - - - 0.848 - - sulfatase 1 [Source:HGNC Symbol;Acc:HGNC:20391]
82. LGALS3 ENSGALG00000012173 3306 0.848 - - 0.848 - - - - - - - galectin 3 [Source:NCBI gene;Acc:373917]
83. KIAA0195 KIAA0195 48 0.848 - - 0.848 - - - - - - -
84. POMC ENSGALG00000016600 99 0.847 - - 0.847 - - - - - - - proopiomelanocortin [Source:NCBI gene;Acc:422011]
85. CASP1 ENSGALG00000001049 1067 0.846 - - 0.846 - - - - - - - caspase 1, transcript variant X2
86. RHOC ENSGALG00000001569 53 0.846 - - 0.846 - - - - - - - ras homolog family member C [Source:NCBI gene;Acc:395869]
87. SFXN1 ENSGALG00000033956 2713 0.846 - - - - - - - 0.846 - - sideroflexin 1 [Source:NCBI gene;Acc:416221]
88. NCAPD3 ENSGALG00000001491 221 0.846 - - 0.846 - - - - - - - non-SMC condensin II complex subunit D3, transcript variant X3
89. GRIK3 ENSGALG00000002098 111 0.846 - - 0.846 - - - - - - - glutamate ionotropic receptor kainate type subunit 3 [Source:HGNC Symbol;Acc:HGNC:4581]
90. PLEKHG5 ENSGALG00000027476 42 0.846 - - 0.846 - - - - - - - pleckstrin homology and RhoGEF domain containing G5 [Source:HGNC Symbol;Acc:HGNC:29105]
91. TMEM26 ENSGALG00000025862 2222 0.846 - - - - - - - 0.846 - - transmembrane protein 26 [Source:NCBI gene;Acc:423663]
92. SIRT6 ENSGALG00000001245 3716 0.845 - - - - - - - 0.845 - - sirtuin 6 [Source:NCBI gene;Acc:428332]
93. ATP2B2 ENSGALG00000030908 584 0.845 - - 0.845 - - - - - - - ATPase plasma membrane Ca2+ transporting 2 [Source:HGNC Symbol;Acc:HGNC:815]
94. ZCCHC10 ENSGALG00000036666 5148 0.844 - - - - - - - 0.844 - - zinc finger CCHC-type containing 10 [Source:HGNC Symbol;Acc:HGNC:25954]
95. TEX10 ENSGALG00000013438 3121 0.844 - - - - - - - 0.844 - - testis expressed 10 [Source:NCBI gene;Acc:420993]
96. DEPDC1B ENSGALG00000014729 5334 0.844 - - - - - - - 0.844 - - DEP domain containing 1B [Source:NCBI gene;Acc:427152]
97. ATP11B ENSGALG00000008839 3455 0.844 - - - - - - - 0.844 - - ATPase phospholipid transporting 11B (putative), transcript variant X3
98. ITPR1 ENSGALG00000008294 1226 0.843 - - 0.843 - - - - - - - inositol 1,4,5-trisphosphate receptor type 1 [Source:NCBI gene;Acc:395412]
99. PKP4 ENSGALG00000012561 3087 0.842 - - 0.842 - - - - - - - plakophilin 4 [Source:NCBI gene;Acc:424328]
100. WDR89 ENSGALG00000011827 1481 0.842 - - 0.842 - - - - - - - WD repeat domain 89 [Source:NCBI gene;Acc:423510]

There are 487 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA