Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for zfr

Gene Name Gene ID Reads Annotation
zfr ENSDARG00000027109, ENSDARG00000116459 4171 zinc finger RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-378]










Genes with expression patterns similar to zfr

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. zfr ENSDARG00000027109, ENSDARG00000116459 4171 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 zinc finger RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-378]
2. si:ch211-69g19.2 ENSDARG00000070656, ENSDARG00000110191, ENSDARG00000114528 2860 2.441 0.720 - - - - - - 0.733 0.988 si:ch211-69g19.2 [Source:ZFIN;Acc:ZDB-GENE-030804-13]
3. zmiz1a ENSDARG00000074502 3920 2.209 0.708 0.737 - - - - 0.764 - - zinc finger, MIZ-type containing 1a [Source:ZFIN;Acc:ZDB-GENE-080220-27]
4. tmem63ba ENSDARG00000104559 11859 1.911 - - - - - 0.927 - - 0.984 transmembrane protein 63Ba [Source:ZFIN;Acc:ZDB-GENE-030131-4320]
5. ube2i ube2i 13024 1.868 - - - - - 0.995 0.873 - -
6. tlk1b ENSDARG00000100715 1153 1.828 - 0.836 - - - - - - 0.992 tousled-like kinase 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4933]
7. murcb murcb 13655 1.823 - - - - - 0.936 - - 0.887
8. ncoa4 ENSDARG00000021439 4581 1.748 - - - - - 0.760 - - 0.988 nuclear receptor coactivator 4 [Source:ZFIN;Acc:ZDB-GENE-040426-689]
9. NAT16 ENSDARG00000086222 4682 1.745 0.750 - - - - - - - 0.995 N-acetyltransferase 16 [Source:ZFIN;Acc:ZDB-GENE-030219-43]
10. rcc2 ENSDARG00000011510, ENSDARG00000115981 7997 1.744 - - - - - 0.997 - 0.747 - regulator of chromosome condensation 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2213]
11. hcfc1b ENSDARG00000012519 3633 1.74 - - - - - - 0.752 - 0.988 host cell factor C1b [Source:ZFIN;Acc:ZDB-GENE-030131-2411]
12. ndufs4 ENSDARG00000052840, ENSDARG00000110036 3441 1.736 - - - - - 0.994 0.742 - - NADH:ubiquinone oxidoreductase subunit S4 [Source:ZFIN;Acc:ZDB-GENE-050522-421]
13. CR936437.1 CR936437.1 6465 1.731 - - - - - 0.995 0.736 - -
14. foxp4 ENSDARG00000076120 9458 1.722 - 0.760 - - - - - - 0.962 forkhead box P4 [Source:ZFIN;Acc:ZDB-GENE-101207-1]
15. gmps ENSDARG00000079848 8217 1.72 - - 0.729 - - - - - 0.991 guanine monophosphate synthase [Source:ZFIN;Acc:ZDB-GENE-040426-1503]
16. bri3 ENSDARG00000086332 8405 1.716 - - - - - 0.925 - 0.791 - brain protein I3 [Source:ZFIN;Acc:ZDB-GENE-030131-3038]
17. ZC3H4 ENSDARG00000078355 1888 1.716 - 0.721 - - - - - - 0.995 zinc finger CCCH-type containing 4 [Source:ZFIN;Acc:ZDB-GENE-100330-1]
18. fam46ba 4575 1.71 - 0.721 - - - 0.989 - - - family with sequence similarity 46, member Ba
19. USMG5 USMG5 10356 1.709 - - - - - 0.971 0.738 - -
20. pbx2 ENSDARG00000019717 6892 1.708 - - - - - - 0.782 0.926 - pre-B-cell leukemia homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-000405-5]
21. si:ch211-151o1.2 si:ch211-151o1.2 3580 1.708 - - - - - 0.996 0.712 - -
22. anks1b ENSDARG00000003512 847 1.706 - - - - - 0.997 - 0.709 - ankyrin repeat and sterile alpha motif domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-041210-349]
23. snx27b ENSDARG00000016977 2768 1.705 - - - - - - - 0.713 0.992 sorting nexin family member 27b [Source:ZFIN;Acc:ZDB-GENE-040426-1529]
24. MAST2 ENSDARG00000074311, ENSDARG00000109372 1527 1.705 - 0.712 - - - - - - 0.993 microtubule associated serine/threonine kinase 2 [Source:ZFIN;Acc:ZDB-GENE-050309-150]
25. WDR83OS ENSDARG00000025554 7117 1.698 - - - - - 0.995 0.703 - - WD repeat domain 83 opposite strand [Source:ZFIN;Acc:ZDB-GENE-040426-1674]
26. sdc4 ENSDARG00000059906 10105 1.695 - 0.732 - - - 0.963 - - - syndecan 4 [Source:ZFIN;Acc:ZDB-GENE-061111-1]
27. zeb2a ENSDARG00000062338, ENSDARG00000111349, ENSDARG00000115964 6087 1.69 - - - - - - 0.708 - 0.982 zinc finger E-box binding homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-070912-553]
28. lmnb1 ENSDARG00000044299 9817 1.681 - - - - - - 0.716 - 0.965 lamin B1 [Source:ZFIN;Acc:ZDB-GENE-020424-2]
29. meis2b ENSDARG00000077840 5166 1.677 - - - - - - 0.774 - 0.903 Meis homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-000210-23]
30. srsf6b ENSDARG00000016783 9926 1.668 - - - - - - 0.801 0.867 - serine/arginine-rich splicing factor 6b [Source:ZFIN;Acc:ZDB-GENE-041219-1]
31. boc ENSDARG00000074335 4832 1.637 - - - - - 0.902 0.735 - - BOC cell adhesion associated, oncogene regulated [Source:ZFIN;Acc:ZDB-GENE-030131-6560]
32. si:ch211-197h24.6 ENSDARG00000091631 1933 1.62 - 0.797 - - - - 0.823 - - si:ch211-197h24.6 [Source:ZFIN;Acc:ZDB-GENE-030131-1361]
33. Sep-06 Sep-06 5465 1.612 - 0.885 - - - - 0.727 - -
34. pygmb ENSDARG00000013317 5454 1.61 - - - - - 0.889 0.721 - - phosphorylase, glycogen, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-1206]
35. pes ENSDARG00000018902 3286 1.598 0.847 0.751 - - - - - - - pescadillo [Source:ZFIN;Acc:ZDB-GENE-990415-206]
36. nmrk2 ENSDARG00000067848 10293 1.597 - 0.727 - - - 0.870 - - - nicotinamide riboside kinase 2 [Source:ZFIN;Acc:ZDB-GENE-040912-44]
37. wu:fb17g07 wu:fb17g07 10567 1.591 - - - - - - 0.816 0.775 -
38. arid2 ENSDARG00000007413 4413 1.575 - 0.824 - - - - 0.751 - - AT rich interactive domain 2 (ARID, RFX-like) [Source:ZFIN;Acc:ZDB-GENE-030131-6311]
39. hmgb2b ENSDARG00000053990 11519 1.575 - 0.836 - - - - 0.739 - - high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]
40. puf60a ENSDARG00000032175 5618 1.568 - - - - - - 0.850 0.718 - poly-U binding splicing factor a [Source:ZFIN;Acc:ZDB-GENE-030131-2891]
41. si:ch211-218d20.13 si:ch211-218d20.13 5488 1.564 - 0.781 - - - 0.783 - - -
42. mdh2 ENSDARG00000043371 14485 1.561 - - - - - 0.834 0.727 - - malate dehydrogenase 2, NAD (mitochondrial) [Source:ZFIN;Acc:ZDB-GENE-040426-2143]
43. eif4h ENSDARG00000042252 6742 1.547 - 0.708 - - - - 0.839 - - eukaryotic translation initiation factor 4h [Source:ZFIN;Acc:ZDB-GENE-010328-19]
44. MRPL52 ENSDARG00000090568 4402 1.544 - 0.799 - - - - 0.745 - - mitochondrial ribosomal protein L52 [Source:ZFIN;Acc:ZDB-GENE-110325-1]
45. r3hcc1l ENSDARG00000089243 1254 1.544 - 0.826 - - - - 0.718 - - R3H domain and coiled-coil containing 1-like [Source:ZFIN;Acc:ZDB-GENE-030131-4156]
46. esd ENSDARG00000019496 3192 1.543 - 0.834 - - - - 0.709 - - esterase D/formylglutathione hydrolase [Source:ZFIN;Acc:ZDB-GENE-050417-328]
47. hdgfrp2 7462 1.538 0.763 0.775 - - - - - - - hepatoma-derived growth factor-related protein 2, transcript variant X1
48. tcf7l1b ENSDARG00000007369 2785 1.537 - 0.770 - - - - 0.767 - - transcription factor 7 like 1b [Source:ZFIN;Acc:ZDB-GENE-991110-10]
49. ipo9 ENSDARG00000016753, ENSDARG00000113327 936 1.537 - 0.731 - - - - 0.806 - - importin 9 [Source:ZFIN;Acc:ZDB-GENE-040426-2953]
50. PTP4A3 ENSDARG00000039997 3814 1.537 - 0.724 - - - - 0.813 - - protein tyrosine phosphatase type IVA, member 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2220]
51. yme1l1a ENSDARG00000075192 2634 1.537 - 0.726 - - - - 0.811 - - YME1-like 1a [Source:ZFIN;Acc:ZDB-GENE-091113-41]
52. eya1 ENSDARG00000014259, ENSDARG00000116267 5111 1.531 0.785 0.746 - - - - - - - EYA transcriptional coactivator and phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-990712-18]
53. ebf1a 733 1.525 0.812 - - - - - 0.713 - - early B-cell factor 1a, transcript variant X4
54. CABZ01072954.1 CABZ01072954.1 2330 1.524 - 0.819 - - - - 0.705 - -
55. nudt3a ENSDARG00000016256 2713 1.523 - 0.735 - - - - 0.788 - - nudix (nucleoside diphosphate linked moiety X)-type motif 3a [Source:ZFIN;Acc:ZDB-GENE-040426-792]
56. fam78a fam78a 238 1.518 0.747 0.771 - - - - - - -
57. ppp2r1a ppp2r1a 11291 1.518 - 0.743 - - - - 0.775 - -
58. abi2b ENSDARG00000014875 2259 1.517 0.798 - - - - - 0.719 - - abl-interactor 2b [Source:ZFIN;Acc:ZDB-GENE-060519-5]
59. grsf1 ENSDARG00000053021 2752 1.515 - 0.790 - - - - 0.725 - - G-rich RNA sequence binding factor 1 [Source:ZFIN;Acc:ZDB-GENE-060825-196]
60. celf1 ENSDARG00000005315 5598 1.511 - 0.766 - - - - 0.745 - - cugbp, Elav-like family member 1 [Source:ZFIN;Acc:ZDB-GENE-000501-1]
61. sdc3 3788 1.507 - 0.785 - - - - 0.722 - - syndecan 3
62. nop16 ENSDARG00000044402 3645 1.505 0.776 - - - - - 0.729 - - NOP16 nucleolar protein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040718-267]
63. ilk ENSDARG00000056964 6686 1.494 0.781 - - - - - 0.713 - - integrin-linked kinase [Source:ZFIN;Acc:ZDB-GENE-040426-1435]
64. scoca ENSDARG00000087333 1739 1.493 0.771 - - - - - 0.722 - - short coiled-coil protein a [Source:ZFIN;Acc:ZDB-GENE-061013-114]
65. timm8b ENSDARG00000055708 7291 1.49 - 0.788 - - - - 0.702 - - translocase of inner mitochondrial membrane 8 homolog B (yeast) [Source:ZFIN;Acc:ZDB-GENE-031019-1]
66. tmsb ENSDARG00000054911 6411 1.49 - 0.745 - - - - 0.745 - - thymosin, beta [Source:ZFIN;Acc:ZDB-GENE-050307-5]
67. eaf1 ENSDARG00000070795, ENSDARG00000113962 834 1.489 0.758 - - - - - 0.731 - - ELL associated factor 1 [Source:ZFIN;Acc:ZDB-GENE-040625-109]
68. phactr4b ENSDARG00000032221 1389 1.489 - 0.727 - - - - 0.762 - - phosphatase and actin regulator 4b [Source:ZFIN;Acc:ZDB-GENE-040426-1131]
69. pa2g4b ENSDARG00000070657 7999 1.487 - 0.723 - - - - 0.764 - - proliferation-associated 2G4, b [Source:ZFIN;Acc:ZDB-GENE-030131-2182]
70. snai1b ENSDARG00000046019 886 1.48 0.719 0.761 - - - - - - - snail family zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-980526-514]
71. jam3b ENSDARG00000061794 5655 1.479 0.775 - - - - - 0.704 - - junctional adhesion molecule 3b [Source:ZFIN;Acc:ZDB-GENE-030131-441]
72. snrpf ENSDARG00000105037 10241 1.476 0.775 - - - - - 0.701 - - small nuclear ribonucleoprotein polypeptide F [Source:ZFIN;Acc:ZDB-GENE-040930-9]
73. pebp1 ENSDARG00000042069 6651 1.475 - 0.729 - - - - 0.746 - - phosphatidylethanolamine binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2621]
74. eif1axa ENSDARG00000029003, ENSDARG00000114914 3973 1.474 - 0.710 - - - - 0.764 - - eukaryotic translation initiation factor 1A X-linked a [Source:ZFIN;Acc:ZDB-GENE-041010-185]
75. ubr5 ENSDARG00000018192 9267 1.474 - 0.762 0.712 - - - - - - ubiquitin protein ligase E3 component n-recognin 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6559]
76. hyal2 hyal2 2205 1.473 - 0.772 - - - - - 0.701 -
77. cox7c ENSDARG00000104537 12169 1.472 0.721 - - - - - 0.751 - - cytochrome c oxidase subunit 7C [Source:ZFIN;Acc:ZDB-GENE-030131-8062]
78. zranb1b ENSDARG00000063190, ENSDARG00000110714 1816 1.472 0.703 0.769 - - - - - - - zinc finger, RAN-binding domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-061110-94]
79. ipo4 ENSDARG00000041493 1578 1.471 - 0.721 - - - - 0.750 - - importin 4 [Source:ZFIN;Acc:ZDB-GENE-041014-307]
80. ipo7 ENSDARG00000035751 7095 1.469 - 0.737 - - - - 0.732 - - importin 7 [Source:ZFIN;Acc:ZDB-GENE-030131-458]
81. prkacaa ENSDARG00000100349 2711 1.467 - 0.766 - - - - 0.701 - - protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a [Source:ZFIN;Acc:ZDB-GENE-050114-6]
82. nop56 ENSDARG00000012820 15231 1.467 0.712 0.755 - - - - - - - NOP56 ribonucleoprotein homolog [Source:ZFIN;Acc:ZDB-GENE-040109-1]
83. gse1 ENSDARG00000062020 2337 1.46 - 0.741 - - - - 0.719 - - Gse1 coiled-coil protein [Source:ZFIN;Acc:ZDB-GENE-030131-9569]
84. REXO4 ENSDARG00000088619 655 1.458 0.746 0.712 - - - - - - - REX4 homolog, 3'-5' exonuclease [Source:ZFIN;Acc:ZDB-GENE-050411-124]
85. pnisr ENSDARG00000069855, ENSDARG00000116449 3465 1.458 - 0.714 - - - - 0.744 - - PNN-interacting serine/arginine-rich protein [Source:ZFIN;Acc:ZDB-GENE-030131-362]
86. ash1l ENSDARG00000070981 2520 1.457 - 0.718 - - - - 0.739 - - ash1 (absent, small, or homeotic)-like (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-6101]
87. mrps18b ENSDARG00000007065 2121 1.457 - - - - - - 0.744 0.713 - mitochondrial ribosomal protein S18B [Source:ZFIN;Acc:ZDB-GENE-050417-278]
88. rpf2 ENSDARG00000043960 2719 1.456 - 0.739 - - - - 0.717 - - ribosome production factor 2 homolog [Source:ZFIN;Acc:ZDB-GENE-040426-2501]
89. thoc7 ENSDARG00000015394 3824 1.455 - 0.702 - - - - 0.753 - - THO complex 7 [Source:ZFIN;Acc:ZDB-GENE-040801-17]
90. kif22 ENSDARG00000102624 3694 1.454 - - 0.714 - - - 0.740 - - kinesin family member 22 [Source:ZFIN;Acc:ZDB-GENE-080204-34]
91. CABZ01086220.1 CABZ01086220.1 723 1.453 0.708 - - - - - 0.745 - -
92. mrpl48 ENSDARG00000035167 1008 1.452 - 0.736 - - - - 0.716 - - mitochondrial ribosomal protein L48 [Source:ZFIN;Acc:ZDB-GENE-041008-125]
93. ctr9 ENSDARG00000009170 1265 1.449 - 0.743 - - - - 0.706 - - CTR9 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-030131-3782]
94. mrps15 ENSDARG00000109289 3258 1.449 - 0.719 - - - - 0.730 - - mitochondrial ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-040718-188]
95. ddx49 ENSDARG00000012899 1604 1.448 - 0.705 - - - - 0.743 - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Source:ZFIN;Acc:ZDB-GENE-031030-3]
96. rac1 rac1 7341 1.448 - - - - - - 0.727 0.721 -
97. atp5j 4272 1.448 - 0.741 - - - - 0.707 - - ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6, transcript variant X2
98. hs2st1a ENSDARG00000099478 864 1.447 - - - - - - 0.745 0.702 - heparan sulfate 2-O-sulfotransferase 1a [Source:ZFIN;Acc:ZDB-GENE-070112-2312]
99. prpf38b ENSDARG00000053101 1785 1.446 - 0.702 - - - - 0.744 - - pre-mRNA processing factor 38B [Source:ZFIN;Acc:ZDB-GENE-040426-2878]
100. pbxip1a ENSDARG00000071015 4960 1.445 - 0.739 - - - - 0.706 - - pre-B-cell leukemia homeobox interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-060503-871]

There are 1266 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA