Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for zc3h13

Gene Name Gene ID Reads Annotation
zc3h13 ENSDARG00000037177, ENSDARG00000113331 2662 zinc finger CCCH-type containing 13 [Source:ZFIN;Acc:ZDB-GENE-040426-1619]










Genes with expression patterns similar to zc3h13

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. zc3h13 ENSDARG00000037177, ENSDARG00000113331 2662 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 zinc finger CCCH-type containing 13 [Source:ZFIN;Acc:ZDB-GENE-040426-1619]
2. u2af2b ENSDARG00000011740 6946 2.977 - - - - - 0.726 0.725 0.717 0.809 U2 small nuclear RNA auxiliary factor 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1881]
3. si:dkey-19e4.5 ENSDARG00000089886 2562 2.568 - - 0.963 - - - 0.778 - 0.827 si:dkey-19e4.5 [Source:ZFIN;Acc:ZDB-GENE-030131-1852]
4. ncalda ENSDARG00000070688 5069 2.524 - - 0.935 - - - 0.757 - 0.832 neurocalcin delta a [Source:ZFIN;Acc:ZDB-GENE-080220-28]
5. prr12a ENSDARG00000074229 1668 2.492 - - 0.952 - 0.711 - - - 0.829 proline rich 12a [Source:ZFIN;Acc:ZDB-GENE-041111-223]
6. pes ENSDARG00000018902 3286 2.361 0.706 - 0.867 - - - - - 0.788 pescadillo [Source:ZFIN;Acc:ZDB-GENE-990415-206]
7. supt16h ENSDARG00000079949 4755 2.335 - 0.723 - - - - - 0.760 0.852 SPT16 homolog, facilitates chromatin remodeling subunit [Source:ZFIN;Acc:ZDB-GENE-031118-96]
8. kifc1 ENSDARG00000001558 6658 2.293 - - - - - 0.717 0.743 - 0.833 kinesin family member C1 [Source:ZFIN;Acc:ZDB-GENE-000208-21]
9. CABZ01111990.1 CABZ01111990.1 4374 2.279 - - - - - - 0.702 0.773 0.804
10. brd3a ENSDARG00000006527 1636 2.265 - - - - - - 0.738 0.746 0.781 bromodomain containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-6141]
11. abi2b ENSDARG00000014875 2259 2.243 0.716 - - - - - 0.711 - 0.816 abl-interactor 2b [Source:ZFIN;Acc:ZDB-GENE-060519-5]
12. rerea ENSDARG00000077353 4162 2.24 - - - - - - 0.704 0.752 0.784 arginine-glutamic acid dipeptide (RE) repeats a [Source:ZFIN;Acc:ZDB-GENE-060718-1]
13. drg1 ENSDARG00000039345 7545 2.239 0.701 - - - - - 0.794 - 0.744 developmentally regulated GTP binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8767]
14. u2af1 ENSDARG00000015325 3217 2.148 0.711 - - - - 0.716 - 0.721 - U2 small nuclear RNA auxiliary factor 1 [Source:ZFIN;Acc:ZDB-GENE-020419-1]
15. emc3 ENSDARG00000020607 3406 1.822 - - 0.950 - - - - - 0.872 ER membrane protein complex subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2904]
16. CCDC88C ENSDARG00000053713 1026 1.8 - - 0.947 - - - - - 0.853 coiled-coil domain containing 88C [Source:ZFIN;Acc:ZDB-GENE-100419-3]
17. ints8 ENSDARG00000057986 1063 1.78 - - 0.948 - - - - - 0.832 integrator complex subunit 8 [Source:ZFIN;Acc:ZDB-GENE-050522-556]
18. polr2j ENSDARG00000035146 1493 1.769 - - 0.959 - - - 0.810 - - polymerase (RNA) II (DNA directed) polypeptide J [Source:ZFIN;Acc:ZDB-GENE-050522-120]
19. znf207a ENSDARG00000015538 2630 1.759 - - 0.956 - - - - - 0.803 zinc finger protein 207, a [Source:ZFIN;Acc:ZDB-GENE-040426-2273]
20. cab39l1 ENSDARG00000021374, ENSDARG00000112995 2033 1.759 - - 0.945 - - 0.814 - - - calcium binding protein 39, like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2897]
21. myo1b ENSDARG00000024694 1761 1.747 - - 0.951 - - - - - 0.796 myosin IB [Source:ZFIN;Acc:ZDB-GENE-030131-695]
22. eif2b2 ENSDARG00000041397, ENSDARG00000114220 2348 1.739 - - 0.937 - - - - - 0.802 eukaryotic translation initiation factor 2B, subunit 2 beta [Source:ZFIN;Acc:ZDB-GENE-040426-2605]
23. ier5l ENSDARG00000054906, ENSDARG00000110793, ENSDARG00000114072 4216 1.734 - - 0.953 - - 0.781 - - - immediate early response 5-like [Source:ZFIN;Acc:ZDB-GENE-030131-5134]
24. carm1 ENSDARG00000018698 5599 1.73 - - 0.953 - - - - - 0.777 coactivator-associated arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040724-77]
25. bag6 ENSDARG00000075892 3782 1.721 - - 0.934 - - - - - 0.787 BCL2 associated athanogene 6 [Source:ZFIN;Acc:ZDB-GENE-010501-5]
26. ppm1da ENSDARG00000009273 7713 1.719 - - 0.917 - - - - - 0.802 protein phosphatase, Mg2+/Mn2+ dependent, 1Da [Source:ZFIN;Acc:ZDB-GENE-040426-815]
27. aqr ENSDARG00000016775 1581 1.719 - - 0.957 - - - - - 0.762 aquarius intron-binding spliceosomal factor [Source:ZFIN;Acc:ZDB-GENE-040426-1189]
28. taf6l ENSDARG00000079684 1408 1.717 - 0.760 0.957 - - - - - - TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor [Source:ZFIN;Acc:ZDB-GENE-030131-6789]
29. nsun2 ENSDARG00000056665 740 1.713 - - 0.950 - - - - - 0.763 NOP2/Sun RNA methyltransferase family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4017]
30. gpatch2 1221 1.713 - 0.757 0.956 - - - - - - G patch domain containing 2, transcript variant X1
31. gna13a ENSDARG00000073765 925 1.706 - - 0.954 - - 0.752 - - - guanine nucleotide binding protein (G protein), alpha 13a [Source:ZFIN;Acc:ZDB-GENE-030131-5024]
32. taf13 ENSDARG00000070834, ENSDARG00000109314 1982 1.704 - - 0.952 - - - 0.752 - - TATA-box binding protein associated factor 13 [Source:ZFIN;Acc:ZDB-GENE-030131-2873]
33. prpf38b ENSDARG00000053101 1785 1.703 - - 0.884 - - - 0.819 - - pre-mRNA processing factor 38B [Source:ZFIN;Acc:ZDB-GENE-040426-2878]
34. syncripl ENSDARG00000026723 3889 1.703 - - 0.842 - - - - - 0.861 synaptotagmin binding, cytoplasmic RNA interacting protein, like [Source:ZFIN;Acc:ZDB-GENE-030131-3104]
35. xpo1a ENSDARG00000078041 3544 1.7 - 0.740 0.960 - - - - - - exportin 1 (CRM1 homolog, yeast) a [Source:ZFIN;Acc:ZDB-GENE-050309-201]
36. fbxw11b ENSDARG00000017230, ENSDARG00000112841 2593 1.696 - - 0.945 - - 0.751 - - - F-box and WD repeat domain containing 11b [Source:ZFIN;Acc:ZDB-GENE-040426-2903]
37. skp2 ENSDARG00000004937, ENSDARG00000114929 1584 1.684 0.721 - 0.963 - - - - - - S-phase kinase-associated protein 2, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-030219-158]
38. ppp4cb ENSDARG00000076439 1693 1.677 - 0.724 0.953 - - - - - - protein phosphatase 4, catalytic subunit b [Source:ZFIN;Acc:ZDB-GENE-080219-32]
39. npepps ENSDARG00000044943, ENSDARG00000110180, ENSDARG00000116096 3572 1.676 - - 0.941 - - - 0.735 - - aminopeptidase puromycin sensitive [Source:ZFIN;Acc:ZDB-GENE-060524-3]
40. ctdsp1 ENSDARG00000040674 2828 1.672 - 0.722 0.950 - - - - - - CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-050522-523]
41. coe2 coe2 1633 1.671 - - 0.946 - - - - 0.725 -
42. top1l ENSDARG00000070545 40529 1.655 - - 0.844 - - - 0.811 - - DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
43. necap2 ENSDARG00000046002 4372 1.655 - 0.726 0.929 - - - - - - NECAP endocytosis associated 2 [Source:ZFIN;Acc:ZDB-GENE-050522-67]
44. ftr78 ftr78 273 1.653 0.705 - 0.948 - - - - - -
45. rimkla ENSDARG00000016830, ENSDARG00000112193 4111 1.645 - - - - - - 0.757 - 0.888 ribosomal modification protein rimK-like family member A [Source:ZFIN;Acc:ZDB-GENE-040912-20]
46. FBXL3 FBXL3 1769 1.639 - - - - - 0.780 - - 0.859
47. CCDC106 CCDC106 1908 1.632 - - - - - - 0.811 - 0.821
48. GATAD2B ENSDARG00000005834 3855 1.623 - - 0.913 - - - 0.710 - - GATA zinc finger domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-060503-655]
49. bri3bp ENSDARG00000010108 6295 1.617 - - 0.901 - - - - - 0.716 bri3 binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-5254]
50. ube2nb ENSDARG00000045877 4583 1.614 - 0.717 0.897 - - - - - - ubiquitin-conjugating enzyme E2Nb [Source:ZFIN;Acc:ZDB-GENE-040426-1291]
51. CHD1 ENSDARG00000103787 1645 1.602 - - - - - - - 0.750 0.852 chromodomain helicase DNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7120]
52. suv420h1 1810 1.598 - 0.799 - - - - - - 0.799 suppressor of variegation 4-20 homolog 1 (Drosophila)
53. snrpd3 ENSDARG00000013800, ENSDARG00000112203 3334 1.595 - - - - - - - 0.740 0.855 small nuclear ribonucleoprotein D3 polypeptide [Source:ZFIN;Acc:ZDB-GENE-040625-55]
54. ss18 ENSDARG00000002970 2618 1.591 - - - 0.767 - - 0.824 - - synovial sarcoma translocation, chromosome 18 (H. sapiens) [Source:ZFIN;Acc:ZDB-GENE-030131-4867]
55. vcp ENSDARG00000020008, ENSDARG00000116074 2284 1.589 - - - - - - 0.823 - 0.766 valosin containing protein [Source:ZFIN;Acc:ZDB-GENE-030131-5408]
56. tsc22d1 ENSDARG00000038306 2413 1.588 - - - - - - 0.750 - 0.838 TSC22 domain family, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7785]
57. slbp ENSDARG00000100558 3405 1.587 - - - - - - 0.823 - 0.764 stem-loop binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-9686]
58. MZT1 ENSDARG00000096668 2514 1.583 - - - - - - 0.779 - 0.804 mitotic spindle organizing protein 1 [Source:HGNC Symbol;Acc:HGNC:33830]
59. pomp ENSDARG00000032296 4439 1.581 - - 0.841 - - - - - 0.740 proteasome maturation protein [Source:ZFIN;Acc:ZDB-GENE-040801-10]
60. mex3b ENSDARG00000058369 1867 1.576 - - - - - - 0.710 - 0.866 mex-3 RNA binding family member B [Source:ZFIN;Acc:ZDB-GENE-030131-2628]
61. ptprsb 1085 1.576 - 0.717 - - - - - - 0.859 protein tyrosine phosphatase, receptor type, s, b
62. mllt10 ENSDARG00000045401 7557 1.574 - 0.831 - - - - 0.743 - - MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:ZFIN;Acc:ZDB-GENE-041114-176]
63. ptpro ENSDARG00000100422, ENSDARG00000110470 1850 1.573 - 0.722 - - - - - - 0.851 protein tyrosine phosphatase, receptor type, O [Source:ZFIN;Acc:ZDB-GENE-070424-54]
64. zdhhc17 ENSDARG00000070441 1073 1.569 - - - - - 0.763 - - 0.806 zinc finger, DHHC-type containing 17 [Source:ZFIN;Acc:ZDB-GENE-070424-194]
65. efnb2a ENSDARG00000020164 5262 1.568 - - 0.867 - - - - 0.701 - ephrin-B2a [Source:ZFIN;Acc:ZDB-GENE-990415-67]
66. mta2 ENSDARG00000013031 2932 1.567 - - - - - - - 0.768 0.799 metastasis associated 1 family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4803]
67. her4.1 ENSDARG00000056732 1264 1.566 - - - - - - - 0.745 0.821 hairy-related 4, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-980526-521]
68. tle2 5014 1.564 0.782 - - - - - 0.782 - - transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila), transcript variant X4
69. supt6h ENSDARG00000006524 3221 1.562 - - - - - - 0.731 - 0.831 SPT6 homolog, histone chaperone [Source:ZFIN;Acc:ZDB-GENE-030131-7949]
70. bahcc1 bahcc1 1934 1.561 - - - - - - 0.726 - 0.835
71. sin3b ENSDARG00000062472 2025 1.561 - - - - - - 0.738 0.823 - SIN3 transcription regulator family member B [Source:ZFIN;Acc:ZDB-GENE-030131-8264]
72. triap1 ENSDARG00000014963 646 1.561 - 0.820 - - - - - - 0.741 TP53 regulated inhibitor of apoptosis 1 [Source:ZFIN;Acc:ZDB-GENE-050417-161]
73. srsf3a ENSDARG00000025397, ENSDARG00000100815 11622 1.557 - - - - - - 0.791 0.766 - serine/arginine-rich splicing factor 3a [Source:ZFIN;Acc:ZDB-GENE-030616-631]
74. psmc3 ENSDARG00000007141 5592 1.552 - - - - - - - 0.707 0.845 proteasome 26S subunit, ATPase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-666]
75. mrps23 ENSDARG00000033973 2265 1.551 0.800 0.751 - - - - - - - mitochondrial ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-040801-134]
76. prpf4bb ENSDARG00000040310 2260 1.545 - - - - - - 0.703 - 0.842 pre-mRNA processing factor 4Bb [Source:ZFIN;Acc:ZDB-GENE-040426-2799]
77. eef2a.1 ENSDARG00000042094 1781 1.545 - 0.743 - - - - - - 0.802 eukaryotic translation elongation factor 2a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050522-500]
78. LEPROTL1 ENSDARG00000104871 3019 1.544 - - - - - - - 0.716 0.828 leptin receptor overlapping transcript like 1 [Source:HGNC Symbol;Acc:HGNC:6555]
79. h3f3a 66671 1.543 - - - - - - 0.785 0.758 - H3 histone, family 3A, transcript variant X1
80. ier5 ENSDARG00000009881, ENSDARG00000111680 11432 1.538 - - - 0.704 - - 0.834 - - immediate early response 5 [Source:ZFIN;Acc:ZDB-GENE-030616-127]
81. mntb ENSDARG00000073988 1023 1.533 - 0.712 - - - - - - 0.821 MAX network transcriptional repressor b [Source:ZFIN;Acc:ZDB-GENE-070820-8]
82. eif3ea ENSDARG00000090697 14670 1.532 - - 0.817 - - - 0.715 - - eukaryotic translation initiation factor 3, subunit E, a [Source:ZFIN;Acc:ZDB-GENE-030131-3827]
83. otub1b ENSDARG00000011462 4329 1.532 - - - - - - 0.729 - 0.803 OTU deubiquitinase, ubiquitin aldehyde binding 1b [Source:ZFIN;Acc:ZDB-GENE-040718-204]
84. ADAM22 ENSDARG00000060532 2259 1.526 - - - - - - - 0.733 0.793 ADAM metallopeptidase domain 22 [Source:ZFIN;Acc:ZDB-GENE-070810-1]
85. KIF1A KIF1A 1686 1.525 - - - - - - - 0.707 0.818
86. derl1 ENSDARG00000021905 4698 1.523 - - - - - - 0.737 - 0.786 derlin 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2793]
87. hoxa9a ENSDARG00000105013 1509 1.505 0.759 - - - - - 0.746 - - homeobox A9a [Source:ZFIN;Acc:ZDB-GENE-000823-1]
88. polr2d ENSDARG00000076509 3386 1.5 - - - - - - 0.735 0.765 - polymerase (RNA) II (DNA directed) polypeptide D [Source:ZFIN;Acc:ZDB-GENE-040714-2]
89. hcfc1b ENSDARG00000012519 3633 1.497 - 0.725 - - - - 0.772 - - host cell factor C1b [Source:ZFIN;Acc:ZDB-GENE-030131-2411]
90. mrps2 ENSDARG00000103198 2410 1.495 0.711 - - - - - - - 0.784 mitochondrial ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-070112-992]
91. ilf3b ENSDARG00000105177 9473 1.491 - - 0.722 - - - - 0.769 - interleukin enhancer binding factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-587]
92. ahsa1l ahsa1l 2366 1.489 - - - - - 0.726 0.763 - -
93. ppp2r2d ENSDARG00000102009 5710 1.488 - - - - - 0.751 0.737 - - protein phosphatase 2, regulatory subunit B, delta [Source:ZFIN;Acc:ZDB-GENE-040426-2086]
94. zc2hc1a ENSDARG00000027915, ENSDARG00000112745 974 1.487 - 0.702 - - - - - 0.785 - zinc finger, C2HC-type containing 1A [Source:ZFIN;Acc:ZDB-GENE-030131-3132]
95. cdca8 ENSDARG00000043137 7541 1.486 - - - - - - 0.762 0.724 - cell division cycle associated 8 [Source:ZFIN;Acc:ZDB-GENE-041114-171]
96. igf1ra ENSDARG00000027423, ENSDARG00000113936, ENSDARG00000116846 2228 1.486 - - - - - 0.771 0.715 - - insulin-like growth factor 1a receptor [Source:ZFIN;Acc:ZDB-GENE-020503-1]
97. CPEB2 ENSDARG00000052604 2646 1.482 - - - - - 0.732 0.750 - - cytoplasmic polyadenylation element binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-130530-639]
98. srek1ip1 ENSDARG00000043728 985 1.479 - - - - - - - 0.703 0.776 SREK1-interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-051030-24]
99. HNRNPA2B1 HNRNPA2B1 14997 1.473 - - - 0.710 - - 0.763 - -
100. cbx3a ENSDARG00000003860 4922 1.473 - - - - - - 0.725 - 0.748 chromobox homolog 3a (HP1 gamma homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-1158]

There are 1402 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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