Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for xrn1

Gene Name Gene ID Reads Annotation
xrn1 ENSDARG00000091652 2864 5'-3' exoribonuclease 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1203]










Genes with expression patterns similar to xrn1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. xrn1 ENSDARG00000091652 2864 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 5'-3' exoribonuclease 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1203]
2. rnf185 ENSDARG00000032997 1490 2.221 - - 0.759 - - - 0.728 0.734 - ring finger protein 185 [Source:ZFIN;Acc:ZDB-GENE-040426-1977]
3. MCUR1 MCUR1 786 1.804 - 0.844 - - - - - - 0.960
4. CU929394.1 CU929394.1 405 1.791 - - 0.819 - - - - - 0.972
5. ATF6B 960 1.768 - - 0.804 - - - - - 0.964 activating transcription factor 6 beta
6. dgcr2 ENSDARG00000042962, ENSDARG00000109230 2339 1.766 - 0.843 - - - - - - 0.923 DiGeorge syndrome critical region gene 2 [Source:ZFIN;Acc:ZDB-GENE-040718-404]
7. map3k7 ENSDARG00000020469 2845 1.761 - - 0.846 - - - - - 0.915 mitogen-activated protein kinase kinase kinase 7 [Source:ZFIN;Acc:ZDB-GENE-041001-135]
8. zgc:153952 739 1.755 - - 0.792 - - - - - 0.963 zgc:153952, transcript variant X1
9. otud5a ENSDARG00000059006 2073 1.742 - - - - - 0.803 - - 0.939 OTU deubiquitinase 5a [Source:ZFIN;Acc:ZDB-GENE-030616-61]
10. fam133b ENSDARG00000013863 5070 1.733 - - 0.827 - - - - - 0.906 family with sequence similarity 133, member B [Source:ZFIN;Acc:ZDB-GENE-060503-229]
11. taf10 ENSDARG00000068641 3333 1.728 - 0.852 - - - - - - 0.876 TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-060526-334]
12. cetn4 ENSDARG00000041215 898 1.726 - 0.740 - - - - - - 0.986 centrin 4 [Source:ZFIN;Acc:ZDB-GENE-030826-21]
13. edem1 ENSDARG00000025094 1343 1.72 - - - - - 0.831 - - 0.889 ER degradation enhancer, mannosidase alpha-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-808]
14. rab11al ENSDARG00000014340 2116 1.719 - - 0.737 - - - - - 0.982 RAB11a, member RAS oncogene family, like [Source:ZFIN;Acc:ZDB-GENE-031118-188]
15. sec62 ENSDARG00000019951 3724 1.717 - 0.781 - - - - - - 0.936 SEC62 homolog, preprotein translocation factor [Source:ZFIN;Acc:ZDB-GENE-050913-83]
16. hmgcrb ENSDARG00000105206 2080 1.711 - - - - - - 0.741 - 0.970 3-hydroxy-3-methylglutaryl-CoA reductase b [Source:ZFIN;Acc:ZDB-GENE-051108-1]
17. PHTF2 ENSDARG00000102123, ENSDARG00000114503 898 1.705 - - - - - - 0.735 - 0.970 putative homeodomain transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-040711-4]
18. ecsit ENSDARG00000062834 896 1.7 - - - - - - 0.739 - 0.961 ECSIT signalling integrator [Source:ZFIN;Acc:ZDB-GENE-030131-1332]
19. EMILIN2 EMILIN2 429 1.698 - 0.713 - - - - - - 0.985
20. waslb ENSDARG00000006283 2160 1.694 - 0.761 - - - - - - 0.933 Wiskott-Aldrich syndrome-like b [Source:ZFIN;Acc:ZDB-GENE-040426-718]
21. hcls1 ENSDARG00000012729 1547 1.69 - - - - - - 0.755 - 0.935 hematopoietic cell-specific Lyn substrate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7191]
22. CAMTA2 ENSDARG00000092799 1950 1.687 - - 0.769 - - - - - 0.918 calmodulin binding transcription activator 2 [Source:ZFIN;Acc:ZDB-GENE-090313-6]
23. CABZ01078889.1 CABZ01078889.1 911 1.684 - - - 0.710 - - - - 0.974
24. tead3a ENSDARG00000074321 2240 1.663 - - 0.730 - - - - - 0.933 TEA domain family member 3 a [Source:ZFIN;Acc:ZDB-GENE-031112-10]
25. ypel5 ENSDARG00000088929 1011 1.663 - 0.705 - - - - - - 0.958 yippee-like 5 [Source:ZFIN;Acc:ZDB-GENE-040426-1220]
26. mfsd2ab ENSDARG00000035909, ENSDARG00000114714 1520 1.653 - 0.841 0.812 - - - - - - major facilitator superfamily domain containing 2ab [Source:NCBI gene;Acc:445176]
27. taf13 ENSDARG00000070834, ENSDARG00000109314 1982 1.636 - 0.728 - - - - - - 0.908 TATA-box binding protein associated factor 13 [Source:ZFIN;Acc:ZDB-GENE-030131-2873]
28. rnf7 ENSDARG00000055524 3390 1.629 - - - - - - 0.729 - 0.900 ring finger protein 7 [Source:ZFIN;Acc:ZDB-GENE-050220-12]
29. pak2a ENSDARG00000068177 8931 1.623 - - 0.807 - - - - - 0.816 p21 protein (Cdc42/Rac)-activated kinase 2a [Source:ZFIN;Acc:ZDB-GENE-021011-2]
30. il17rd ENSDARG00000098359 1153 1.608 - - - - - - 0.728 0.880 - interleukin 17 receptor D [Source:ZFIN;Acc:ZDB-GENE-020320-5]
31. bnipl ENSDARG00000060435 1382 1.595 - 0.808 0.787 - - - - - - BCL2 interacting protein like [Source:ZFIN;Acc:ZDB-GENE-060503-81]
32. ctnnd1 ENSDARG00000078233 2520 1.583 - 0.823 0.760 - - - - - - catenin (cadherin-associated protein), delta 1 [Source:ZFIN;Acc:ZDB-GENE-110208-9]
33. p4ha2 ENSDARG00000010085 2008 1.58 - - 0.785 - - - - 0.795 - procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-030827-1]
34. lama5 ENSDARG00000058543 2782 1.574 - - 0.779 - - - - 0.795 - laminin, alpha 5 [Source:ZFIN;Acc:ZDB-GENE-030131-9823]
35. colgalt2 ENSDARG00000014670 1932 1.573 - - 0.789 - - - - - 0.784 collagen beta(1-O)galactosyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-070222-1]
36. klf6a ENSDARG00000029072 3758 1.573 - - 0.781 - - - - - 0.792 Kruppel-like factor 6a [Source:ZFIN;Acc:ZDB-GENE-021115-9]
37. trub2 ENSDARG00000028379 783 1.57 - - 0.824 - - 0.746 - - - TruB pseudouridine (psi) synthase family member 2 [Source:ZFIN;Acc:ZDB-GENE-040704-41]
38. mxra5b ENSDARG00000076309 190 1.565 - - 0.799 - - - - 0.766 - matrix-remodelling associated 5b [Source:ZFIN;Acc:ZDB-GENE-081104-119]
39. tmed3 ENSDARG00000028816, ENSDARG00000113132 1686 1.562 - - 0.718 - - - - - 0.844 transmembrane p24 trafficking protein 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8335]
40. brf1a ENSDARG00000017835 206 1.557 - - 0.787 - - - - 0.770 - BRF1, RNA polymerase III transcription initiation factor a [Source:ZFIN;Acc:ZDB-GENE-030131-6334]
41. med19a ENSDARG00000037392, ENSDARG00000114246 2231 1.557 - - - - - - 0.762 0.795 - mediator complex subunit 19a [Source:ZFIN;Acc:ZDB-GENE-060929-232]
42. otud5b ENSDARG00000056840, ENSDARG00000114052 2199 1.551 - - 0.829 - - 0.722 - - - OTU deubiquitinase 5b [Source:ZFIN;Acc:ZDB-GENE-040801-50]
43. sbf1 ENSDARG00000062968, ENSDARG00000111535 1287 1.546 - 0.703 - - - - 0.843 - - SET binding factor 1 [Source:ZFIN;Acc:ZDB-GENE-040718-139]
44. zfyve21 ENSDARG00000027887 1687 1.54 - - 0.782 - - - 0.758 - - zinc finger, FYVE domain containing 21 [Source:ZFIN;Acc:ZDB-GENE-030131-1296]
45. CU207276.4 CU207276.4 1427 1.539 - - - - - - - 0.719 0.820
46. cul5a ENSDARG00000069742, ENSDARG00000112542, ENSDARG00000116292 955 1.534 - - 0.780 - - - 0.754 - - cullin 5a [Source:ZFIN;Acc:ZDB-GENE-030131-5426]
47. uap1l1 ENSDARG00000013082, ENSDARG00000114093 694 1.529 - 0.757 - - - - - 0.772 - UDP-N-acetylglucosamine pyrophosphorylase 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1056]
48. APOD APOD 3404 1.528 - - 0.711 - - - - - 0.817
49. supt5h ENSDARG00000042724, ENSDARG00000111598 6419 1.523 0.720 - - - - 0.803 - - - SPT5 homolog, DSIF elongation factor subunit [Source:ZFIN;Acc:ZDB-GENE-001207-1]
50. tbl1xr1b ENSDARG00000008966 2203 1.521 - - 0.796 - - - 0.725 - - transducin (beta)-like 1 X-linked receptor 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1192]
51. gtf2a1 ENSDARG00000011000 2026 1.518 - - - - - - 0.726 - 0.792 general transcription factor IIA, 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2694]
52. ppp3ccb ENSDARG00000057456, ENSDARG00000116250 6265 1.516 - - - - - 0.718 0.798 - - protein phosphatase 3, catalytic subunit, gamma isozyme, b [Source:ZFIN;Acc:ZDB-GENE-070112-1102]
53. ACTR3 ENSDARG00000091138 1739 1.516 - - 0.776 - - 0.740 - - - ARP3 actin related protein 3 homolog [Source:ZFIN;Acc:ZDB-GENE-040428-2]
54. mmp14a ENSDARG00000002235 911 1.515 - - 0.791 - - - 0.724 - - matrix metallopeptidase 14a (membrane-inserted) [Source:ZFIN;Acc:ZDB-GENE-030901-1]
55. igf1rb ENSDARG00000034434, ENSDARG00000110935 813 1.513 - - 0.793 - - - - 0.720 - insulin-like growth factor 1b receptor [Source:ZFIN;Acc:ZDB-GENE-020503-2]
56. VPS37B_1 VPS37B_1 1816 1.513 - - 0.794 - - - - 0.719 -
57. rcbtb2 ENSDARG00000090687 1658 1.501 - - 0.791 - - 0.710 - - - regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 [Source:ZFIN;Acc:ZDB-GENE-071016-3]
58. homez homez 1875 1.499 - - 0.792 - - 0.707 - - -
59. frem2b ENSDARG00000102626 1416 1.498 - 0.730 - - - 0.768 - - - Fras1 related extracellular matrix protein 2b [Source:ZFIN;Acc:ZDB-GENE-081119-4]
60. nutf2l ENSDARG00000014499 3927 1.494 - - - - - 0.706 - - 0.788 nuclear transport factor 2, like [Source:ZFIN;Acc:ZDB-GENE-020416-1]
61. fdps ENSDARG00000040890 4000 1.492 - 0.769 0.723 - - - - - - farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase) [Source:ZFIN;Acc:ZDB-GENE-050506-78]
62. ppp6r3 ENSDARG00000013379 2912 1.49 - - - - - 0.757 0.733 - - protein phosphatase 6, regulatory subunit 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3251]
63. clptm1 ENSDARG00000018973, ENSDARG00000109534, ENSDARG00000114443 2439 1.487 - 0.751 0.736 - - - - - - cleft lip and palate associated transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-040801-265]
64. lrrc1 ENSDARG00000102684 1054 1.483 - 0.703 - - - - - 0.780 - leucine rich repeat containing 1 [Source:ZFIN;Acc:ZDB-GENE-050320-1]
65. u2af2b ENSDARG00000011740 6946 1.482 - - - - - 0.779 0.703 - - U2 small nuclear RNA auxiliary factor 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1881]
66. atp6v1c1a ENSDARG00000023967 4611 1.481 - 0.752 - - - - 0.729 - - ATPase H+ transporting V1 subunit C1a [Source:ZFIN;Acc:ZDB-GENE-030616-612]
67. tram2 ENSDARG00000030092 1906 1.477 - - - - - - - 0.712 0.765 translocation associated membrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2024]
68. parp16 ENSDARG00000018593 873 1.476 - - 0.756 - - - 0.720 - - poly (ADP-ribose) polymerase family, member 16 [Source:ZFIN;Acc:ZDB-GENE-040426-2289]
69. ctsf ENSDARG00000063095 4564 1.471 - 0.765 - - - - - - 0.706 cathepsin F [Source:ZFIN;Acc:ZDB-GENE-030131-9831]
70. tmod2 ENSDARG00000002571 5119 1.471 - - 0.702 - - 0.769 - - - tropomodulin 2 [Source:ZFIN;Acc:ZDB-GENE-040912-185]
71. prickle1b ENSDARG00000045694 7536 1.47 - - 0.721 - - 0.749 - - - prickle homolog 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2152]
72. Mar-02 Mar-02 1812 1.467 - - 0.765 - - 0.702 - - -
73. rrp36 ENSDARG00000032516, ENSDARG00000109916 916 1.466 0.705 - - - - - 0.761 - - ribosomal RNA processing 36 [Source:ZFIN;Acc:ZDB-GENE-030131-9751]
74. mid1ip1a ENSDARG00000041051 5425 1.441 - 0.740 - - - - - 0.701 - MID1 interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-990415-81]
75. stom ENSDARG00000003835, ENSDARG00000109478, ENSDARG00000109779 5514 1.439 - - - - - 0.737 - - 0.702 stomatin [Source:ZFIN;Acc:ZDB-GENE-980526-486]
76. pgrmc1 ENSDARG00000054172 5423 1.429 - 0.707 - - - 0.722 - - - progesterone receptor membrane component 1 [Source:ZFIN;Acc:ZDB-GENE-041114-91]
77. pygo2 ENSDARG00000036772 2510 1.423 0.707 - - - - - 0.716 - - pygopus homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-050809-108]
78. rps6ka3a ENSDARG00000035556, ENSDARG00000116641 3608 1.42 - 0.714 - - - 0.706 - - - ribosomal protein S6 kinase a, polypeptide 3a [Source:ZFIN;Acc:ZDB-GENE-030219-119]
79. CT030204.3 CT030204.3 486 0.99 - - - - - - - - 0.990
80. zgc:153311 ENSDARG00000015964 85 0.986 - - - - - - - - 0.986 zgc:153311 [Source:ZFIN;Acc:ZDB-GENE-060825-194]
81. BCL2L12 BCL2L12 327 0.986 - - - - - - - - 0.986
82. alg9 ENSDARG00000012840 631 0.984 - - - - - - - - 0.984 ALG9, alpha-1,2-mannosyltransferase [Source:ZFIN;Acc:ZDB-GENE-040426-1270]
83. TRABD2A ENSDARG00000089701 401 0.983 - - - - - - - - 0.983 TraB domain containing 2A [Source:ZFIN;Acc:ZDB-GENE-030131-4053]
84. zgc:195633_1 142 0.983 - - - - - - - - 0.983 zgc:195633
85. mtfr1 ENSDARG00000045304 277 0.983 - - - - - - - - 0.983 mitochondrial fission regulator 1 [Source:ZFIN;Acc:ZDB-GENE-041212-86]
86. dlg1 ENSDARG00000009677 706 0.982 - - - - - - - - 0.982 discs, large homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010724-8]
87. rsph4a ENSDARG00000067606 132 0.982 - - - - - - - - 0.982 radial spoke head component 4A [Source:ZFIN;Acc:ZDB-GENE-030131-7437]
88. C16H8orf76 C16H8orf76 329 0.982 - - - - - - - - 0.982
89. fas ENSDARG00000043586 194 0.982 - - - - - - - - 0.982 Fas cell surface death receptor [Source:ZFIN;Acc:ZDB-GENE-061019-2]
90. gins1 ENSDARG00000007624 1421 0.982 - - - - - - - - 0.982 GINS complex subunit 1 (Psf1 homolog) [Source:ZFIN;Acc:ZDB-GENE-041010-184]
91. igsf5 igsf5 85 0.982 - - - - - - - - 0.982
92. CTTNBP2NL CTTNBP2NL 260 0.982 - - - - - - - - 0.982
93. rel ENSDARG00000055276 571 0.982 - - - - - - - - 0.982 v-rel avian reticuloendotheliosis viral oncogene homolog [Source:ZFIN;Acc:ZDB-GENE-040718-255]
94. trim33 ENSDARG00000016181 1718 0.981 - - - - - - - - 0.981 tripartite motif containing 33 [Source:ZFIN;Acc:ZDB-GENE-030131-2773]
95. olfml2a ENSDARG00000005648 1157 0.981 - - - - - - - - 0.981 olfactomedin-like 2A [Source:ZFIN;Acc:ZDB-GENE-081105-107]
96. junbb ENSDARG00000104773 2536 0.981 - - - - - - - - 0.981 JunB proto-oncogene, AP-1 transcription factor subunit b [Source:ZFIN;Acc:ZDB-GENE-040426-2666]
97. vps53 ENSDARG00000069324, ENSDARG00000116674 1130 0.981 - - - - - - - - 0.981 vacuolar protein sorting 53 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-041114-199]
98. ptpmt1 ENSDARG00000013860 772 0.981 - - - - - - - - 0.981 protein tyrosine phosphatase, mitochondrial 1 [Source:ZFIN;Acc:ZDB-GENE-070112-272]
99. zgc:86811 ENSDARG00000035573 958 0.981 - - - - - - - - 0.981 zgc:86811 [Source:ZFIN;Acc:ZDB-GENE-040625-113]
100. pank2 ENSDARG00000003311 881 0.981 - - - - - - - - 0.981 pantothenate kinase 2 [Source:ZFIN;Acc:ZDB-GENE-070112-1952]

There are 1255 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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