Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for xrcc1

Gene Name Gene ID Reads Annotation
xrcc1 ENSDARG00000009494 1346 X-ray repair complementing defective repair in Chinese hamster cells 1 [Source:ZFIN;Acc:ZDB-GENE-040822-30]










Genes with expression patterns similar to xrcc1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. xrcc1 ENSDARG00000009494 1346 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 X-ray repair complementing defective repair in Chinese hamster cells 1 [Source:ZFIN;Acc:ZDB-GENE-040822-30]
2. matr3l1.1_1 ENSDARG00000000394, ENSDARG00000001162 1860 2.538 0.856 - - 0.756 - 0.926 - - - matrin 3-like 1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-40]
3. sept5a ENSDARG00000013843 1206 2.34 0.727 0.799 - - - - - 0.814 - septin 5a [Source:ZFIN;Acc:ZDB-GENE-030131-7868]
4. knop1 ENSDARG00000077721 2198 2.289 - 0.742 - - - 0.785 0.762 - - lysine-rich nucleolar protein 1 [Source:ZFIN;Acc:ZDB-GENE-090313-76]
5. mxd3 ENSDARG00000098350 3040 2.281 - - - - 0.725 0.835 - - 0.721 MAX dimerization protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1588]
6. isoc1 ENSDARG00000060069 1621 2.21 0.789 - - - - - 0.717 - 0.704 isochorismatase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-061020-1]
7. parp1 ENSDARG00000019529 6787 2.171 0.704 - - - 0.719 - - - 0.748 poly (ADP-ribose) polymerase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3955]
8. vps36 ENSDARG00000057021 636 1.769 - 0.854 - - - 0.915 - - - vacuolar protein sorting 36 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-7753]
9. nup88 ENSDARG00000003235, ENSDARG00000111135 1114 1.769 - - - 0.828 - 0.941 - - - nucleoporin 88 [Source:ZFIN;Acc:ZDB-GENE-050522-297]
10. prdm4 ENSDARG00000017366 454 1.765 0.806 - - - - 0.959 - - - PR domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041210-131]
11. tmem101 ENSDARG00000114508 494 1.76 - - - - - 0.943 0.817 - - transmembrane protein 101 [Source:ZFIN;Acc:ZDB-GENE-121214-289]
12. TOB2 TOB2 254 1.751 - 0.845 - - - 0.906 - - -
13. acn9 acn9 520 1.746 - - - 0.835 - 0.911 - - -
14. slc12a9 ENSDARG00000060366 293 1.705 - - - - - 0.960 0.745 - - solute carrier family 12, member 9 [Source:ZFIN;Acc:ZDB-GENE-050208-222]
15. c1qtnf3 c1qtnf3 387 1.698 - 0.782 - - - 0.916 - - -
16. uspl1 ENSDARG00000034825, ENSDARG00000109866 457 1.684 - 0.777 - - - 0.907 - - - ubiquitin specific peptidase like 1 [Source:ZFIN;Acc:ZDB-GENE-040930-7]
17. zgc:163030 ENSDARG00000069192 2963 1.672 - - - 0.728 - 0.944 - - - zgc:163030 [Source:ZFIN;Acc:ZDB-GENE-060810-77]
18. PDXK PDXK 224 1.663 - 0.776 - - - 0.887 - - -
19. cdc34b ENSDARG00000012627 3879 1.656 - - 0.743 - - 0.913 - - - cell division cycle 34 homolog (S. cerevisiae) b [Source:ZFIN;Acc:ZDB-GENE-040718-439]
20. MRPL42 ENSDARG00000079391 1403 1.644 - - - - - 0.935 0.709 - - mitochondrial ribosomal protein L42 [Source:ZFIN;Acc:ZDB-GENE-101014-1]
21. hdac3 ENSDARG00000037514, ENSDARG00000110316 1985 1.636 - - - - - 0.886 - - 0.750 histone deacetylase 3 [Source:ZFIN;Acc:ZDB-GENE-040426-847]
22. plaa ENSDARG00000042728 1284 1.632 0.704 - - - - 0.928 - - - phospholipase A2-activating protein [Source:ZFIN;Acc:ZDB-GENE-030826-13]
23. brd1b ENSDARG00000051798 1712 1.623 - - - - - 0.900 - - 0.723 bromodomain containing 1b [Source:ZFIN;Acc:ZDB-GENE-070209-98]
24. casc5 1487 1.614 - - 0.705 - - 0.909 - - - cancer susceptibility candidate 5, transcript variant X3
25. smek1 ENSDARG00000042187 3509 1.614 - - - - - 0.898 - - 0.716 SMEK homolog 1, suppressor of mek1 (Dictyostelium) [Source:ZFIN;Acc:ZDB-GENE-030131-3958]
26. safb ENSDARG00000020467 5608 1.608 - - - - - 0.869 - - 0.739 scaffold attachment factor B [Source:ZFIN;Acc:ZDB-GENE-030131-698]
27. nrg1 ENSDARG00000104314 1081 1.604 - - - - - 0.894 0.710 - - neuregulin 1 [Source:ZFIN;Acc:ZDB-GENE-050302-113]
28. cbx2 ENSDARG00000044938 1576 1.599 - - - - 0.718 - - 0.881 - chromobox homolog 2 (Drosophila Pc class) [Source:ZFIN;Acc:ZDB-GENE-030131-5502]
29. gnai2b ENSDARG00000017294 686 1.598 - 0.858 - - - 0.740 - - - guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5861]
30. si:dkey-169i5.4 ENSDARG00000077862 511 1.591 - 0.722 - - - 0.869 - - - si:dkey-169i5.4 [Source:ZFIN;Acc:ZDB-GENE-030131-8695]
31. actl6a ENSDARG00000070828, ENSDARG00000115348 1961 1.584 - - 0.761 - - - 0.823 - - actin-like 6A [Source:ZFIN;Acc:ZDB-GENE-020419-36]
32. hnrnpub ENSDARG00000004735 16496 1.582 0.773 - - - - - - - 0.809 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
33. epha4a ENSDARG00000054454 1501 1.58 - - 0.756 - - - 0.824 - - eph receptor A4a [Source:ZFIN;Acc:ZDB-GENE-001207-7]
34. SPAG5 SPAG5 1117 1.569 - - - 0.805 - - - 0.764 -
35. nrarpa ENSDARG00000091419, ENSDARG00000111485 7867 1.569 0.777 - - - - - 0.792 - - NOTCH regulated ankyrin repeat protein a [Source:ZFIN;Acc:ZDB-GENE-030515-6]
36. manf ENSDARG00000063177, ENSDARG00000114083 570 1.565 - 0.767 - - - - 0.798 - - mesencephalic astrocyte-derived neurotrophic factor [Source:ZFIN;Acc:ZDB-GENE-060929-640]
37. adam17a ENSDARG00000043213 1305 1.564 - 0.835 - - - 0.729 - - - ADAM metallopeptidase domain 17a [Source:ZFIN;Acc:ZDB-GENE-030131-2862]
38. brd4 ENSDARG00000078904 5367 1.553 - - - 0.720 - 0.833 - - - bromodomain containing 4 [Source:ZFIN;Acc:ZDB-GENE-030131-267]
39. pcdh19 ENSDARG00000034344 2378 1.552 - - - - 0.807 - - - 0.745 protocadherin 19 [Source:ZFIN;Acc:ZDB-GENE-030131-4218]
40. dlb ENSDARG00000004232 5120 1.551 - - - - 0.751 - - - 0.800 deltaB [Source:ZFIN;Acc:ZDB-GENE-980526-114]
41. ZNF281 ZNF281 1946 1.547 - - - - 0.773 0.774 - - -
42. eif2s1a ENSDARG00000005827 5992 1.546 - - - - - 0.803 0.743 - - eukaryotic translation initiation factor 2, subunit 1 alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-526]
43. TAF15 ENSDARG00000070019 5102 1.545 - - - - 0.796 - - - 0.749 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-061215-102]
44. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 1.545 - - 0.793 - - - - - 0.752 POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
45. ptp4a3 ENSDARG00000039997 1964 1.539 - 0.739 - - - 0.800 - - - protein tyrosine phosphatase type IVA, member 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2220]
46. crk ENSDARG00000055635, ENSDARG00000109497, ENSDARG00000115801 5105 1.534 - - - - - 0.769 - 0.765 - v-crk avian sarcoma virus CT10 oncogene homolog [Source:ZFIN;Acc:ZDB-GENE-040801-148]
47. mex3b ENSDARG00000058369 1867 1.534 - - 0.795 - 0.739 - - - - mex-3 RNA binding family member B [Source:ZFIN;Acc:ZDB-GENE-030131-2628]
48. rfx2 ENSDARG00000013575 1275 1.532 0.707 - - - - 0.825 - - - regulatory factor X, 2 (influences HLA class II expression) [Source:ZFIN;Acc:ZDB-GENE-050227-4]
49. suz12a ENSDARG00000070256 2229 1.529 - 0.796 - - - - - - 0.733 SUZ12, polycomb repressive complex 2 subunit a [Source:ZFIN;Acc:ZDB-GENE-040801-36]
50. yy1b ENSDARG00000027978 2669 1.528 0.807 - - 0.721 - - - - - YY1 transcription factor b [Source:ZFIN;Acc:ZDB-GENE-040426-2127]
51. AL844567.1 AL844567.1 1605 1.526 0.720 - - - - - - 0.806 -
52. krcp ENSDARG00000040224 5961 1.518 - 0.785 - - - - - 0.733 - kelch repeat-containing protein [Source:ZFIN;Acc:ZDB-GENE-030131-2126]
53. pygo2 ENSDARG00000036772 2510 1.516 - 0.737 - - - - - 0.779 - pygopus homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-050809-108]
54. ENDOD1_5 ENDOD1_5 8723 1.515 0.730 - 0.785 - - - - - -
55. snap25b ENSDARG00000058117 469 1.511 0.702 0.809 - - - - - - - synaptosomal-associated protein, 25b [Source:ZFIN;Acc:ZDB-GENE-980526-392]
56. kmt2a ENSDARG00000004537 2169 1.507 0.709 - - - - - - 0.798 - lysine (K)-specific methyltransferase 2A [Source:ZFIN;Acc:ZDB-GENE-080521-3]
57. marcksa ENSDARG00000004049 2518 1.507 - - - - - - 0.736 - 0.771 myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
58. med12 ENSDARG00000103953, ENSDARG00000109815, ENSDARG00000116469 1894 1.506 - - - - - 0.761 - 0.745 - mediator complex subunit 12 [Source:ZFIN;Acc:ZDB-GENE-060125-1]
59. tbp ENSDARG00000014994 1591 1.505 - - - - - - 0.710 0.795 - TATA box binding protein [Source:ZFIN;Acc:ZDB-GENE-030616-563]
60. ccni2 ENSDARG00000033046 418 1.504 - 0.777 - - - - - - 0.727 cyclin I family, member 2 [Source:ZFIN;Acc:ZDB-GENE-081106-2]
61. dr1 ENSDARG00000105098, ENSDARG00000113528 5263 1.503 - - 0.721 - - - - - 0.782 down-regulator of transcription 1 [Source:ZFIN;Acc:ZDB-GENE-061013-797]
62. gltscr1 gltscr1 1487 1.502 - 0.720 - - - - - 0.782 -
63. ENSDARG00000023499 ENSDARG00000023499 395 1.501 - - - - - - 0.777 0.724 -
64. setdb1b ENSDARG00000099021 2937 1.493 0.750 0.743 - - - - - - - SET domain, bifurcated 1b [Source:ZFIN;Acc:ZDB-GENE-061013-224]
65. cpsf5 cpsf5 1841 1.488 - 0.732 - - - - - - 0.756
66. C8H1orf106 C8H1orf106 2690 1.485 - - 0.780 - - - - - 0.705
67. whsc1 1701 1.485 - 0.725 0.760 - - - - - - Wolf-Hirschhorn syndrome candidate 1
68. DACT3_1 DACT3_1 1235 1.482 0.733 - - - - - - - 0.749
69. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 1.476 - 0.771 - - - - - - 0.705 cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
70. cherp ENSDARG00000021812 286 1.473 - 0.705 - - - - 0.768 - - calcium homeostasis endoplasmic reticulum protein [Source:ZFIN;Acc:ZDB-GENE-040407-1]
71. tgif1 ENSDARG00000059337 4020 1.47 - - 0.716 - - - - - 0.754 TGFB-induced factor homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-030131-475]
72. si:ch211-229b6.1 ENSDARG00000093422 151 1.468 - 0.746 - - - - 0.722 - - si:ch211-229b6.1 [Source:ZFIN;Acc:ZDB-GENE-060503-311]
73. magoh ENSDARG00000038635, ENSDARG00000109837 2880 1.468 - - - - 0.721 - - - 0.747 mago homolog, exon junction complex subunit [Source:ZFIN;Acc:ZDB-GENE-041216-1]
74. esco2 ENSDARG00000014685 1971 1.468 - - 0.738 - 0.730 - - - - establishment of sister chromatid cohesion N-acetyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-050913-156]
75. nono ENSDARG00000020482, ENSDARG00000115783 12482 1.467 0.745 - - - - - - - 0.722 non-POU domain containing, octamer-binding [Source:ZFIN;Acc:ZDB-GENE-030131-713]
76. si:ch73-21k16.6 si:ch73-21k16.6 4896 1.465 0.762 - - - - - 0.703 - -
77. CR478286.1_1 CR478286.1_1 306 1.465 - - 0.722 - 0.743 - - - -
78. carm1 ENSDARG00000018698 5599 1.462 - 0.715 - - 0.747 - - - - coactivator-associated arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040724-77]
79. hmg20a ENSDARG00000031198 1763 1.462 - 0.735 - - - - - - 0.727 high mobility group 20A [Source:ZFIN;Acc:ZDB-GENE-030131-5107]
80. zgc:113208 ENSDARG00000035610, ENSDARG00000109302 1095 1.461 0.734 - - - - - 0.727 - - zgc:113208 [Source:ZFIN;Acc:ZDB-GENE-050417-450]
81. fam60al 2846 1.459 - - 0.729 - 0.730 - - - - family with sequence similarity 60, member A, like
82. whsc1l1 8544 1.459 - - - - 0.703 - - - 0.756 Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant X2
83. tuba1c ENSDARG00000055216 8384 1.457 - - - - 0.735 - - - 0.722 tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
84. golga7ba ENSDARG00000036295 1460 1.455 - - - - - 0.714 - - 0.741 golgin A7 family, member Ba [Source:ZFIN;Acc:ZDB-GENE-050417-14]
85. tmpob ENSDARG00000022978 8121 1.454 - - 0.723 - - - - - 0.731 thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
86. rtf1 ENSDARG00000008947 6596 1.454 0.747 - - - - - - - 0.707 RTF1 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-030131-6778]
87. wdhd1 ENSDARG00000015998 775 1.453 - - - - 0.724 - 0.729 - - WD repeat and HMG-box DNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1665]
88. TNKS TNKS 2775 1.45 - 0.719 - - - - - - 0.731
89. rbm17 ENSDARG00000031346 2079 1.441 - - - - - 0.711 0.730 - - RNA binding motif protein 17 [Source:ZFIN;Acc:ZDB-GENE-040426-817]
90. hnrnpm ENSDARG00000061735 19428 1.44 - 0.720 - - - - - - 0.720 heterogeneous nuclear ribonucleoprotein M [Source:ZFIN;Acc:ZDB-GENE-030131-6898]
91. ELOVL4 ELOVL4 3026 1.439 0.721 - - - - - - - 0.718
92. adnpa ENSDARG00000062002, ENSDARG00000115617 2009 1.438 - - 0.733 - - - - - 0.705 activity-dependent neuroprotector homeobox a [Source:ZFIN;Acc:ZDB-GENE-061215-112]
93. metrn ENSDARG00000030367, ENSDARG00000112407, ENSDARG00000115842 7032 1.435 0.731 0.704 - - - - - - - meteorin, glial cell differentiation regulator [Source:ZFIN;Acc:ZDB-GENE-050102-1]
94. snrpc ENSDARG00000009871 9567 1.431 - - - - - - 0.703 - 0.728 small nuclear ribonucleoprotein polypeptide C [Source:ZFIN;Acc:ZDB-GENE-020419-26]
95. nfe2l3 ENSDARG00000019810 3682 1.431 - - - - - 0.729 0.702 - - nuclear factor, erythroid 2-like 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2334]
96. stk35 ENSDARG00000086856 289 1.421 0.708 0.713 - - - - - - - serine/threonine kinase 35 [Source:ZFIN;Acc:ZDB-GENE-061103-553]
97. fbxo11a_1 ENSDARG00000061631, ENSDARG00000102294, ENSDARG00000112746 10566 1.421 0.707 - - - - - 0.714 - - F-box protein 11a [Source:ZFIN;Acc:ZDB-GENE-061103-70]
98. cyp26c1 ENSDARG00000056029 1426 1.414 - - 0.703 - 0.711 - - - - cytochrome P450, family 26, subfamily C, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-050714-2]
99. wdr5 ENSDARG00000016903 4834 1.411 - - - - 0.708 - - 0.703 - WD repeat domain 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2082]
100. setd8a 2549 1.409 - - - 0.707 - - - - 0.702 SET domain containing (lysine methyltransferase) 8a

There are 1579 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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