Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for vta1

Gene Name Gene ID Reads Annotation
vta1 ENSDARG00000013732 6072 vesicle (multivesicular body) trafficking 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2154]










Genes with expression patterns similar to vta1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. vta1 ENSDARG00000013732 6072 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 vesicle (multivesicular body) trafficking 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2154]
2. tmed7 ENSDARG00000046022 2435 3.353 0.826 - - - - - 0.746 0.790 0.991 transmembrane p24 trafficking protein 7 [Source:ZFIN;Acc:ZDB-GENE-040426-2570]
3. brd4 ENSDARG00000078904 5367 3.334 - 0.753 0.958 - - 0.876 0.747 - - bromodomain containing 4 [Source:ZFIN;Acc:ZDB-GENE-030131-267]
4. rab5c ENSDARG00000026712 4733 3.239 - - 0.978 - - 0.719 0.760 0.782 - RAB5C, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-031118-30]
5. NRD1 NRD1 3486 2.694 - - 0.759 - 0.943 - - - 0.992
6. srp19 ENSDARG00000035699 2624 2.624 0.883 - 0.981 - - 0.760 - - - signal recognition particle 19 [Source:ZFIN;Acc:ZDB-GENE-040426-2657]
7. ubr4 ENSDARG00000009549 5565 2.592 - - 0.871 - 0.972 - 0.749 - - ubiquitin protein ligase E3 component n-recognin 4 [Source:ZFIN;Acc:ZDB-GENE-090313-341]
8. ccne2 ENSDARG00000098529 4695 2.584 0.901 - - - 0.963 - - - 0.720 cyclin E2 [Source:ZFIN;Acc:ZDB-GENE-030131-9689]
9. ubl3a ENSDARG00000099532, ENSDARG00000113955 3475 2.546 - 0.808 - - - 0.746 - - 0.992 ubiquitin-like 3a [Source:ZFIN;Acc:ZDB-GENE-030131-3431]
10. magt1 ENSDARG00000058062 3903 2.531 0.767 - - - 0.966 0.798 - - - magnesium transporter 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3667]
11. ppapdc1b ppapdc1b 2866 2.486 - - 0.945 - - 0.789 - 0.752 -
12. ap2m1a ENSDARG00000002790 9781 2.479 - - 0.802 - 0.937 - - 0.740 - adaptor related protein complex 2 subunit mu 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9784]
13. tm9sf3 ENSDARG00000028748, ENSDARG00000111288 4546 2.44 0.860 - - - - 0.764 0.816 - - transmembrane 9 superfamily member 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2714]
14. mtmr9 ENSDARG00000015860 1339 2.404 - 0.712 - - - - 0.702 - 0.990 myotubularin related protein 9 [Source:ZFIN;Acc:ZDB-GENE-040724-223]
15. si:ch211-264e16.1 ENSDARG00000068947 1358 2.353 0.853 - - - - 0.775 0.725 - - si:ch211-264e16.1 [Source:ZFIN;Acc:ZDB-GENE-060503-226]
16. shc1 ENSDARG00000075437 3278 2.312 - 0.716 - - - 0.723 - 0.873 - SHC (Src homology 2 domain containing) transforming protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2538]
17. gmfb ENSDARG00000028327 6522 2.273 0.820 0.728 - - - - 0.725 - - glia maturation factor, beta [Source:ZFIN;Acc:ZDB-GENE-040426-2114]
18. psenen ENSDARG00000068698 2777 2.267 - 0.782 - - - - 0.700 0.785 - presenilin enhancer, gamma-secretase subunit [Source:ZFIN;Acc:ZDB-GENE-040218-1]
19. ISCU ISCU 3648 2.256 0.783 - - - - 0.752 0.721 - -
20. ARHGAP23 ARHGAP23 3946 1.946 - - 0.979 - 0.967 - - - -
21. ube3c ENSDARG00000035978, ENSDARG00000112229 787 1.867 0.886 - 0.981 - - - - - - ubiquitin protein ligase E3C [Source:ZFIN;Acc:ZDB-GENE-040426-1211]
22. myh10 ENSDARG00000000103 7522 1.842 - - - - 0.852 - - - 0.990 myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
23. si:ch211-198a12.6 ENSDARG00000074624, ENSDARG00000114808 8911 1.835 - - - - - 0.852 - - 0.983 si:ch211-198a12.6 [Source:ZFIN;Acc:ZDB-GENE-030131-1683]
24. azin1b ENSDARG00000035869, ENSDARG00000115647 9761 1.835 - 0.852 - - - - - - 0.983 antizyme inhibitor 1b [Source:ZFIN;Acc:ZDB-GENE-030121-1]
25. znf703 ENSDARG00000035563, ENSDARG00000112912 2226 1.82 0.847 - 0.973 - - - - - - zinc finger protein 703 [Source:ZFIN;Acc:ZDB-GENE-010717-1]
26. nup155 ENSDARG00000001777 3417 1.818 - - - - - - - 0.827 0.991 nucleoporin 155 [Source:ZFIN;Acc:ZDB-GENE-040426-711]
27. tax1bp3 ENSDARG00000059177 4324 1.817 0.845 - - - 0.972 - - - - Tax1 (human T-cell leukemia virus type I) binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2830]
28. arglu1b ENSDARG00000018319 1110 1.816 0.846 - 0.970 - - - - - - arginine and glutamate rich 1b [Source:ZFIN;Acc:ZDB-GENE-040426-736]
29. sec61g ENSDARG00000018637, ENSDARG00000117172 4899 1.815 - - - - - 0.834 - - 0.981 Sec61 translocon gamma subunit [Source:ZFIN;Acc:ZDB-GENE-040718-203]
30. mrpl11 ENSDARG00000013075 2927 1.809 - - 0.980 - - - - 0.829 - mitochondrial ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040718-294]
31. faf1 ENSDARG00000022418 2922 1.807 - - 0.975 - - 0.832 - - - Fas (TNFRSF6) associated factor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2863]
32. nme3 ENSDARG00000100990 3889 1.806 0.846 - 0.960 - - - - - - NME/NM23 nucleoside diphosphate kinase 3 [Source:ZFIN;Acc:ZDB-GENE-000210-34]
33. tubgcp2 ENSDARG00000013079 1520 1.804 - - 0.983 - - - - 0.821 - tubulin, gamma complex associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-031118-150]
34. psd3l ENSDARG00000104820 1201 1.8 - - 0.984 - - - - 0.816 - pleckstrin and Sec7 domain containing 3, like [Source:ZFIN;Acc:ZDB-GENE-030131-8195]
35. cab39l1 ENSDARG00000021374, ENSDARG00000112995 2033 1.797 0.825 - 0.972 - - - - - - calcium binding protein 39, like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2897]
36. ATL2 ENSDARG00000057719, ENSDARG00000113378, ENSDARG00000113487 1987 1.796 - - 0.979 - - - - 0.817 - atlastin GTPase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6505]
37. kidins220b ENSDARG00000017338 1937 1.79 - - - - 0.972 - - 0.818 - kinase D-interacting substrate 220b [Source:ZFIN;Acc:ZDB-GENE-030131-7824]
38. bcl9 ENSDARG00000036687 1124 1.789 - - 0.976 - - - - 0.813 - B cell CLL/lymphoma 9 [Source:ZFIN;Acc:ZDB-GENE-090313-135]
39. arf2 arf2 12369 1.789 0.836 - - - 0.953 - - - -
40. SERP1_1 ENSDARG00000076223 6668 1.788 - - - - 0.956 - 0.832 - - stress associated endoplasmic reticulum protein 1 [Source:HGNC Symbol;Acc:HGNC:10759]
41. tmem30ab ENSDARG00000043555 1344 1.787 - - 0.978 - - - - 0.809 - transmembrane protein 30Ab [Source:ZFIN;Acc:ZDB-GENE-030131-5884]
42. hddc3 ENSDARG00000020473 2814 1.785 - - - - - - - 0.794 0.991 HD domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-050417-377]
43. emc3 ENSDARG00000020607 3406 1.779 - - 0.968 - - 0.811 - - - ER membrane protein complex subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2904]
44. akr1a1b ENSDARG00000052030, ENSDARG00000112549 2505 1.778 - - - - - 0.787 - - 0.991 aldo-keto reductase family 1, member A1b (aldehyde reductase) [Source:ZFIN;Acc:ZDB-GENE-050417-118]
45. h2afy2_1 ENSDARG00000087897 9887 1.776 0.838 - - - 0.938 - - - - H2A histone family, member Y2 [Source:ZFIN;Acc:ZDB-GENE-050913-114]
46. bag6 ENSDARG00000075892 3782 1.772 0.816 - 0.956 - - - - - - BCL2 associated athanogene 6 [Source:ZFIN;Acc:ZDB-GENE-010501-5]
47. znf207a ENSDARG00000015538 2630 1.771 0.801 - 0.970 - - - - - - zinc finger protein 207, a [Source:ZFIN;Acc:ZDB-GENE-040426-2273]
48. BAZ2B BAZ2B 3285 1.771 0.782 - - - - - - - 0.989
49. rnf183 ENSDARG00000068851 2427 1.769 - - 0.978 - - - 0.791 - - ring finger protein 183 [Source:ZFIN;Acc:ZDB-GENE-060929-1090]
50. safb ENSDARG00000020467 5608 1.767 - - - - 0.967 0.800 - - - scaffold attachment factor B [Source:ZFIN;Acc:ZDB-GENE-030131-698]
51. kdm1a ENSDARG00000060679 6152 1.767 - 0.787 - - - - - - 0.980 lysine (K)-specific demethylase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7828]
52. tmem189 ENSDARG00000042732 4004 1.764 - - 0.973 - - 0.791 - - - transmembrane protein 189 [Source:ZFIN;Acc:ZDB-GENE-041010-150]
53. NFRKB ENSDARG00000091512 646 1.756 0.779 - 0.977 - - - - - - nuclear factor related to kappaB binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-6419]
54. tmeff1b ENSDARG00000056740 11253 1.756 - - - - 0.793 - - - 0.963 transmembrane protein with EGF-like and two follistatin-like domains 1b [Source:ZFIN;Acc:ZDB-GENE-050706-143]
55. zgc:162193 ENSDARG00000098171, ENSDARG00000116836 1773 1.755 - - 0.983 - - - 0.772 - - zgc:162193 [Source:ZFIN;Acc:ZDB-GENE-030131-2035]
56. GTSF1L GTSF1L 2089 1.755 - 0.791 0.964 - - - - - -
57. znf259 znf259 1819 1.754 0.778 - 0.976 - - - - - -
58. bysl ENSDARG00000001057 2621 1.751 0.775 - - - 0.976 - - - - bystin-like [Source:ZFIN;Acc:ZDB-GENE-040426-1287]
59. pik3r1 ENSDARG00000038524 3615 1.75 - - - - 0.977 - - - 0.773 phosphoinositide-3-kinase, regulatory subunit 1 (alpha) [Source:ZFIN;Acc:ZDB-GENE-030131-1280]
60. cicb ENSDARG00000055502 1356 1.749 - - - - 0.975 0.774 - - - capicua transcriptional repressor b [Source:ZFIN;Acc:ZDB-GENE-030131-1966]
61. psmb6 ENSDARG00000002240 8015 1.744 - - - - - 0.836 - 0.908 - proteasome subunit beta 6 [Source:ZFIN;Acc:ZDB-GENE-990415-216]
62. pcbp2 ENSDARG00000099039 4248 1.742 - 0.755 0.987 - - - - - - poly(rC) binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-563]
63. sh3rf1 ENSDARG00000070470 1463 1.742 - - 0.983 - - 0.759 - - - SH3 domain containing ring finger 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6288]
64. setd8b 2528 1.741 - - 0.957 - - 0.784 - - - SET domain containing (lysine methyltransferase) 8b
65. pip5k1ab ENSDARG00000024642 1988 1.74 - - 0.979 - - 0.761 - - - phosphatidylinositol-4-phosphate 5-kinase, type I, alpha, b [Source:ZFIN;Acc:ZDB-GENE-041111-123]
66. gpd1l ENSDARG00000040024 2182 1.74 - - 0.947 - - - - 0.793 - glycerol-3-phosphate dehydrogenase 1 like [Source:ZFIN;Acc:ZDB-GENE-041010-220]
67. thrap3b ENSDARG00000098228 4396 1.738 0.853 - 0.885 - - - - - - thyroid hormone receptor associated protein 3b [Source:ZFIN;Acc:ZDB-GENE-040516-9]
68. pdcd6ip ENSDARG00000025269 2522 1.737 - - - - 0.978 - 0.759 - - programmed cell death 6 interacting protein [Source:ZFIN;Acc:ZDB-GENE-040426-2678]
69. nt5c3a ENSDARG00000058597 14299 1.737 - - - - - - 0.769 - 0.968 5'-nucleotidase, cytosolic IIIA [Source:ZFIN;Acc:ZDB-GENE-030131-439]
70. sfxn3 ENSDARG00000057374, ENSDARG00000112320 1766 1.737 0.761 - 0.976 - - - - - - sideroflexin 3 [Source:ZFIN;Acc:ZDB-GENE-070112-2092]
71. ythdf1 ENSDARG00000016447 3391 1.733 - 0.775 0.958 - - - - - - YTH N(6)-methyladenosine RNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2786]
72. elmod2 ENSDARG00000101669 3101 1.733 - - 0.954 - - - - 0.779 - ELMO/CED-12 domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-060824-2]
73. duox ENSDARG00000062632 1406 1.728 - - 0.974 - - - 0.754 - - dual oxidase [Source:ZFIN;Acc:ZDB-GENE-091117-14]
74. mmgt1 ENSDARG00000010553, ENSDARG00000109407 2992 1.728 - - - - - - 0.737 - 0.991 membrane magnesium transporter 1 [Source:ZFIN;Acc:ZDB-GENE-040801-65]
75. ZNF576 ZNF576 1447 1.725 - - 0.974 - - 0.751 - - -
76. bcap31 ENSDARG00000044972 8708 1.725 - - - - 0.904 - 0.821 - - B cell receptor associated protein 31 [Source:ZFIN;Acc:ZDB-GENE-030616-63]
77. serpinb1 ENSDARG00000055416 1320 1.724 - - - - - - 0.734 - 0.990 serpin peptidase inhibitor, clade B (ovalbumin), member 1 [Source:ZFIN;Acc:ZDB-GENE-040718-400]
78. fzd7a ENSDARG00000060004, ENSDARG00000115544 4171 1.717 - - 0.901 - - - - 0.816 - frizzled class receptor 7a [Source:ZFIN;Acc:ZDB-GENE-990415-223]
79. polr3k ENSDARG00000037835 1552 1.717 - 0.727 - - - - - - 0.990 polymerase (RNA) III (DNA directed) polypeptide K [Source:ZFIN;Acc:ZDB-GENE-040718-291]
80. kctd5 kctd5 13455 1.716 - - - - - - - 0.760 0.956
81. g6pca.1 ENSDARG00000031616 401 1.712 - - 0.979 - - - 0.733 - - glucose-6-phosphatase a, catalytic subunit, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-031001-4]
82. rcc2 ENSDARG00000011510, ENSDARG00000115981 7997 1.707 - 0.729 - - - - - - 0.978 regulator of chromosome condensation 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2213]
83. tcf3b ENSDARG00000099999, ENSDARG00000112646 3589 1.703 - 0.730 0.973 - - - - - - transcription factor 3b [Source:ZFIN;Acc:ZDB-GENE-051113-64]
84. sec22a ENSDARG00000078328 1207 1.703 0.724 - 0.979 - - - - - - SEC22 homolog A, vesicle trafficking protein [Source:ZFIN;Acc:ZDB-GENE-030131-3553]
85. ATXN7 ENSDARG00000074804 1137 1.703 0.840 - - - 0.863 - - - - ataxin 7 [Source:ZFIN;Acc:ZDB-GENE-110621-1]
86. tnikb ENSDARG00000009031 1836 1.701 - - 0.983 - - 0.718 - - - TRAF2 and NCK interacting kinase b [Source:ZFIN;Acc:ZDB-GENE-051113-320]
87. aclya ENSDARG00000099079 2324 1.695 - - - - 0.972 0.723 - - - ATP citrate lyase a [Source:ZFIN;Acc:ZDB-GENE-031113-1]
88. si:ch73-375g18.1 ENSDARG00000075024 2431 1.694 0.727 - 0.967 - - - - - - si:ch73-375g18.1 [Source:ZFIN;Acc:ZDB-GENE-110408-56]
89. RNF5 ENSDARG00000075606 1730 1.692 0.872 - - - - - - 0.820 - ring finger protein 5 [Source:HGNC Symbol;Acc:HGNC:10068]
90. srp9 ENSDARG00000042851 3254 1.69 - - 0.893 - - - 0.797 - - signal recognition particle 9 [Source:ZFIN;Acc:ZDB-GENE-040426-1106]
91. ier5l ENSDARG00000054906, ENSDARG00000110793, ENSDARG00000114072 4216 1.685 - - 0.944 - - - - 0.741 - immediate early response 5-like [Source:ZFIN;Acc:ZDB-GENE-030131-5134]
92. pmm2 ENSDARG00000037654 1783 1.683 - - - 0.715 0.968 - - - - phosphomannomutase 2 [Source:ZFIN;Acc:ZDB-GENE-030722-6]
93. tmem88b ENSDARG00000069388 501 1.682 - 0.874 - - - - - 0.808 - transmembrane protein 88 b [Source:ZFIN;Acc:ZDB-GENE-060929-644]
94. mybbp1a ENSDARG00000078214 2458 1.681 - - 0.868 - - - - 0.813 - MYB binding protein (P160) 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9864]
95. slc35d2 ENSDARG00000089837 1606 1.679 - 0.701 - - 0.978 - - - - solute carrier family 35 (UDP-GlcNAc/UDP-glucose transporter), member D2 [Source:ZFIN;Acc:ZDB-GENE-080125-1]
96. kmt2ca ENSDARG00000079312 2109 1.678 - 0.703 0.975 - - - - - - lysine (K)-specific methyltransferase 2Ca [Source:ZFIN;Acc:ZDB-GENE-080520-3]
97. dynlt1 ENSDARG00000045909 2451 1.673 - 0.756 0.917 - - - - - - dynein, light chain, Tctex-type 1 [Source:ZFIN;Acc:ZDB-GENE-041210-9]
98. syncripl ENSDARG00000026723 3889 1.673 0.873 - 0.800 - - - - - - synaptotagmin binding, cytoplasmic RNA interacting protein, like [Source:ZFIN;Acc:ZDB-GENE-030131-3104]
99. cbx5 ENSDARG00000061187 24026 1.672 - - - - - - 0.769 - 0.903 chromobox homolog 5 (HP1 alpha homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-5553]
100. chd1l ENSDARG00000015471 1142 1.666 0.770 - 0.896 - - - - - - chromodomain helicase DNA binding protein 1-like [Source:ZFIN;Acc:ZDB-GENE-040426-892]

There are 2175 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA