Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for vsx1

Gene Name Gene ID Reads Annotation
vsx1 ENSDARG00000056292, ENSDARG00000109766 442 visual system homeobox 1 homolog, chx10-like [Source:ZFIN;Acc:ZDB-GENE-990415-205]










Genes with expression patterns similar to vsx1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. vsx1 ENSDARG00000056292, ENSDARG00000109766 442 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 visual system homeobox 1 homolog, chx10-like [Source:ZFIN;Acc:ZDB-GENE-990415-205]
2. hes2.2 ENSDARG00000068168 197 2.656 0.861 - - - - - - 0.915 0.880 hes family bHLH transcription factor 2, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060825-55]
3. im:7162084 im:7162084 665 2.612 0.937 - - - - 0.776 0.899 - -
4. ndrg1b ENSDARG00000010420 116 2.583 - - - - - - 0.715 0.951 0.917 N-myc downstream regulated 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1648]
5. crb1 ENSDARG00000100506, ENSDARG00000110621 373 2.488 0.875 0.797 - - - - 0.816 - - crumbs family member 1, photoreceptor morphogenesis associated [Source:ZFIN;Acc:ZDB-GENE-050208-382]
6. urp2 ENSDARG00000067781 85 2.47 0.854 0.870 - - - 0.746 - - - urotensin II-related peptide [Source:ZFIN;Acc:ZDB-GENE-110718-3]
7. foxn4 ENSDARG00000010591 2332 2.453 - - - - 0.905 - 0.764 - 0.784 forkhead box N4 [Source:ZFIN;Acc:ZDB-GENE-990415-277]
8. neurod4 ENSDARG00000003469, ENSDARG00000117149 1732 2.444 - 0.796 - - - - 0.858 - 0.790 neuronal differentiation 4 [Source:ZFIN;Acc:ZDB-GENE-030730-1]
9. CCDC88A_1 CCDC88A_1 12 2.404 - - - - - 0.844 - 0.804 0.756
10. dnm1a ENSDARG00000010042 43 2.346 0.861 0.770 - - - - 0.715 - - dynamin 1a [Source:ZFIN;Acc:ZDB-GENE-081104-27]
11. sox1a ENSDARG00000069866, ENSDARG00000110682, ENSDARG00000114571 576 2.301 - 0.723 - - - 0.750 - - 0.828 SRY (sex determining region Y)-box 1a [Source:ZFIN;Acc:ZDB-GENE-040718-186]
12. si:ch211-247j9.1 ENSDARG00000079283 217 2.279 0.701 - - - - 0.797 0.781 - - si:ch211-247j9.1 [Source:ZFIN;Acc:ZDB-GENE-091204-212]
13. pkd1b ENSDARG00000033029 461 2.266 - 0.787 - - - 0.778 0.701 - - polycystic kidney disease 1b [Source:ZFIN;Acc:ZDB-GENE-100707-2]
14. sst1.1 ENSDARG00000040799 677 2.242 - 0.730 - - - 0.705 0.807 - - somatostatin 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4743]
15. NPPC_1 NPPC_1 11 2.241 - 0.759 - - - 0.767 0.715 - -
16. CABZ01029738.1 CABZ01029738.1 327 2.234 - - - - - - 0.784 0.732 0.718
17. pou4f1 ENSDARG00000005559 821 1.963 - - - - 0.998 - 0.965 - - POU class 4 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-000523-2]
18. neflb ENSDARG00000012426 298 1.889 0.916 - - - - - 0.973 - - neurofilament, light polypeptide b [Source:ZFIN;Acc:ZDB-GENE-060312-44]
19. efcab2 ENSDARG00000074323 88 1.872 0.932 - - - - 0.940 - - - EF-hand calcium binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-070521-5]
20. ANKRD13D ENSDARG00000098140 88 1.863 - - - - - 0.940 0.923 - - ankyrin repeat domain 13 family, member D [Source:ZFIN;Acc:ZDB-GENE-101007-3]
21. si:dkey-21o19.2 ENSDARG00000088900 52 1.86 - - - - - - - 0.945 0.915 si:dkey-21o19.2 [Source:ZFIN;Acc:ZDB-GENE-090313-241]
22. gpr22 gpr22 115 1.853 - - - - - 0.874 0.979 - -
23. cnrip1a ENSDARG00000091683 1491 1.849 - 0.952 - - - - 0.897 - - cannabinoid receptor interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-126]
24. rorb ENSDARG00000033498 544 1.846 - - - - - - - 0.942 0.904 RAR-related orphan receptor B [Source:ZFIN;Acc:ZDB-GENE-061204-2]
25. CABZ01021538.1 CABZ01021538.1 67 1.841 0.874 - - - - - 0.967 - -
26. upf3a ENSDARG00000069297, ENSDARG00000111067 196 1.831 - 0.866 - - - - 0.965 - - UPF3A, regulator of nonsense mediated mRNA decay [Source:ZFIN;Acc:ZDB-GENE-060721-2]
27. pcsk1nl ENSDARG00000076170 1232 1.828 - 0.854 - - - - 0.974 - - proprotein convertase subtilisin/kexin type 1 inhibitor, like [Source:ZFIN;Acc:ZDB-GENE-090427-2]
28. SNAP91 ENSDARG00000098809 556 1.826 - 0.865 - - - - 0.961 - - synaptosomal-associated protein 91 [Source:ZFIN;Acc:ZDB-GENE-100422-6]
29. C25H15orf27 C25H15orf27 69 1.826 - - - - - 1.000 0.826 - -
30. cers6 ENSDARG00000053583 247 1.822 - 0.866 - - - - 0.956 - - ceramide synthase 6 [Source:ZFIN;Acc:ZDB-GENE-070522-1]
31. LRRN3 LRRN3 261 1.815 - 0.870 - - - - 0.945 - -
32. TRIM46 TRIM46 73 1.812 - - - - - 0.843 0.969 - -
33. GABRG1 ENSDARG00000101995 201 1.805 - 0.816 - - - - 0.989 - - gamma-aminobutyric acid type A receptor gamma1 subunit [Source:ZFIN;Acc:ZDB-GENE-141215-66]
34. cntn4 ENSDARG00000098161, ENSDARG00000109387 437 1.803 - 0.867 - - - - 0.936 - - contactin 4 [Source:ZFIN;Acc:ZDB-GENE-060929-776]
35. FUT9 FUT9 91 1.803 - - - - - 0.836 0.967 - -
36. rx1 ENSDARG00000071684 247 1.8 - - - - - - - 0.930 0.870 retinal homeobox gene 1 [Source:ZFIN;Acc:ZDB-GENE-990415-236]
37. nadl1.1 1200 1.797 - 0.831 - - - - 0.966 - - neural adhesion molecule L1.1, transcript variant X1
38. celf4 ENSDARG00000070045 1537 1.796 - 0.855 - - - - 0.941 - - CUGBP, Elav-like family member 4 [Source:ZFIN;Acc:ZDB-GENE-040718-300]
39. adam23a ENSDARG00000062323 580 1.794 - 0.891 - - - - 0.903 - - ADAM metallopeptidase domain 23a [Source:ZFIN;Acc:ZDB-GENE-070810-2]
40. ADAMTS3 ENSDARG00000060127 2839 1.793 0.924 - - - - - 0.869 - - ADAM metallopeptidase with thrombospondin type 1 motif, 3 [Source:ZFIN;Acc:ZDB-GENE-110223-1]
41. cdh7 582 1.791 - - - - - 0.851 0.940 - - cadherin 7, type 2, transcript variant X1
42. RBBP6_3 RBBP6_3 34 1.789 0.789 1.000 - - - - - - -
43. sprn ENSDARG00000056004 128 1.788 0.878 - - - - - 0.910 - - shadow of prion protein [Source:ZFIN;Acc:ZDB-GENE-031110-1]
44. bhlhe22 ENSDARG00000058039 1673 1.784 - - - - - - 0.942 0.842 - basic helix-loop-helix family, member e22 [Source:ZFIN;Acc:ZDB-GENE-040426-1411]
45. cacng2b ENSDARG00000102376 213 1.781 - 1.000 - - - - 0.781 - - calcium channel, voltage-dependent, gamma subunit 2b [Source:ZFIN;Acc:ZDB-GENE-090624-3]
46. pmelb ENSDARG00000033760 206 1.78 - - - - - - - 0.921 0.859 premelanosome protein b [Source:ZFIN;Acc:ZDB-GENE-050912-2]
47. zgc:171531 zgc:171531 77 1.779 - - - - - - - 0.945 0.834
48. jph3 ENSDARG00000102204 175 1.779 - - - - - 0.827 0.952 - - junctophilin 3 [Source:ZFIN;Acc:ZDB-GENE-060503-415]
49. ptpreb ENSDARG00000021151 739 1.776 - - - - - 0.873 0.903 - - protein tyrosine phosphatase, receptor type, E, b [Source:ZFIN;Acc:ZDB-GENE-060503-263]
50. appb ENSDARG00000055543, ENSDARG00000109552 4461 1.775 - - - - 0.997 - 0.778 - - amyloid beta (A4) precursor protein b [Source:ZFIN;Acc:ZDB-GENE-020220-1]
51. si:ch73-389b16.2 ENSDARG00000103802 340 1.775 0.916 - - - - - 0.859 - - si:ch73-389b16.2 [Source:ZFIN;Acc:ZDB-GENE-050411-113]
52. stx1b ENSDARG00000000503 2724 1.772 - 0.844 - - - - 0.928 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
53. nkx2.2a ENSDARG00000053298 747 1.769 0.934 0.835 - - - - - - - NK2 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-403]
54. CABZ01087549.1 CABZ01087549.1 108 1.768 - - - - - 0.908 0.860 - -
55. atoh7 ENSDARG00000069552 254 1.765 - - - - - - - 0.924 0.841 atonal bHLH transcription factor 7 [Source:ZFIN;Acc:ZDB-GENE-000926-1]
56. mdkb ENSDARG00000020708 5393 1.763 - - - - 0.907 - 0.856 - - midkine b [Source:ZFIN;Acc:ZDB-GENE-010131-6]
57. prdm8 ENSDARG00000025017 370 1.76 - 0.857 - - - - 0.903 - - PR domain containing 8 [Source:ZFIN;Acc:ZDB-GENE-040426-2747]
58. SPOCK1 ENSDARG00000074644 794 1.755 - 0.833 - - - - 0.922 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:ZFIN;Acc:ZDB-GENE-110428-1]
59. cbln1 ENSDARG00000057296 165 1.754 - 0.806 - - - - 0.948 - - cerebellin 1 precursor [Source:ZFIN;Acc:ZDB-GENE-040718-226]
60. SLC5A7 SLC5A7 453 1.754 - 0.791 - - - - 0.963 - -
61. trpm1a ENSDARG00000011259, ENSDARG00000111200, ENSDARG00000112747 48 1.75 - - - - - 1.000 - - 0.750 transient receptor potential cation channel, subfamily M, member 1a [Source:ZFIN;Acc:ZDB-GENE-070112-1372]
62. sall3b ENSDARG00000057586 982 1.747 - 0.771 - - - - 0.976 - - spalt-like transcription factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9140]
63. cspg5b ENSDARG00000099793 67 1.747 - - - - - - - 0.840 0.907 chondroitin sulfate proteoglycan 5b [Source:ZFIN;Acc:ZDB-GENE-060503-368]
64. nrxn3b ENSDARG00000062693 192 1.745 - 0.806 - - - - 0.939 - - neurexin 3b [Source:ZFIN;Acc:ZDB-GENE-070206-10]
65. EML5 ENSDARG00000053517 74 1.743 - 0.808 - - - - 0.935 - - echinoderm microtubule associated protein like 5 [Source:HGNC Symbol;Acc:HGNC:18197]
66. pax6l pax6l 54 1.743 - - - - - - - 0.870 0.873
67. prdm13 ENSDARG00000078701 205 1.74 - - - - - - 0.969 0.771 - PR domain containing 13 [Source:ZFIN;Acc:ZDB-GENE-080616-1]
68. espn ENSDARG00000076414 343 1.738 0.942 - - - - 0.796 - - - espin [Source:ZFIN;Acc:ZDB-GENE-081105-173]
69. vsnl1a ENSDARG00000023228 1584 1.737 - 0.865 - - - - 0.872 - - visinin-like 1a [Source:ZFIN;Acc:ZDB-GENE-041001-211]
70. rtn4r ENSDARG00000090035 46 1.736 - - - - - 0.767 0.969 - - reticulon 4 receptor [Source:ZFIN;Acc:ZDB-GENE-040310-1]
71. MSMP ENSDARG00000105581 254 1.736 0.903 0.833 - - - - - - - microseminoprotein, prostate associated [Source:HGNC Symbol;Acc:HGNC:29663]
72. CR388132.1 ENSDARG00000097728 61 1.733 0.889 - - - - 0.844 - - -
73. Metazoa_SRP_30 Metazoa_SRP_30 10 1.732 0.916 0.816 - - - - - - -
74. DOCK4 DOCK4 78 1.73 - - - - - - 0.996 - 0.734
75. slc32a1 ENSDARG00000059775 1092 1.727 - 0.837 - - - - 0.890 - - solute carrier family 32 (GABA vesicular transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-061201-1]
76. prox1a ENSDARG00000055158 1411 1.724 - - - - 0.995 - - - 0.729 prospero homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-397]
77. slc18a3a ENSDARG00000006356 1285 1.721 - 0.796 - - - - 0.925 - - solute carrier family 18 (vesicular acetylcholine transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-060929-990]
78. rhbdl3 ENSDARG00000105190, ENSDARG00000112687, ENSDARG00000116222 977 1.719 - - - - - 0.793 0.926 - - rhomboid, veinlet-like 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-050417-2]
79. chrna2b ENSDARG00000057025 217 1.719 - - - - - 0.868 0.851 - - cholinergic receptor, nicotinic, alpha 2b (neuronal) [Source:ZFIN;Acc:ZDB-GENE-041001-99]
80. lrrc4.1 ENSDARG00000069402 323 1.71 - 0.785 - - - - 0.925 - - leucine rich repeat containing 4.1 [Source:ZFIN;Acc:ZDB-GENE-041210-129]
81. kif5c ENSDARG00000076027 424 1.708 - 0.755 - - - - 0.953 - - kinesin family member 5C [Source:ZFIN;Acc:ZDB-GENE-081105-14]
82. lhx4 ENSDARG00000039458 328 1.707 - - - - - 0.789 0.918 - - LIM homeobox 4 [Source:ZFIN;Acc:ZDB-GENE-060728-1]
83. cadm3 ENSDARG00000057013 1545 1.704 - - - - - - 0.896 - 0.808 cell adhesion molecule 3 [Source:ZFIN;Acc:ZDB-GENE-060512-196]
84. six3b ENSDARG00000054879 2416 1.704 - - - - - - - 0.887 0.817 SIX homeobox 3b [Source:ZFIN;Acc:ZDB-GENE-990415-128]
85. pkd2l1 ENSDARG00000022503 372 1.703 0.872 0.831 - - - - - - - polycystic kidney disease 2-like 1 [Source:ZFIN;Acc:ZDB-GENE-030616-558]
86. DHX32 DHX32 181 1.7 - - - - - 0.857 - 0.843 -
87. mir124-2 196 1.7 - - - - - - 0.957 - 0.743 microRNA 124-2
88. kcnj1b ENSDARG00000002666 87 1.693 - - - - - 0.875 0.818 - - potassium inwardly-rectifying channel, subfamily J, member 1b [Source:ZFIN;Acc:ZDB-GENE-070620-9]
89. dnm1b ENSDARG00000009281 219 1.69 - 0.936 - - - - 0.754 - - dynamin 1b [Source:ZFIN;Acc:ZDB-GENE-100920-3]
90. rims2a ENSDARG00000101606 1088 1.689 - 0.861 - - - - 0.828 - - regulating synaptic membrane exocytosis 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1656]
91. CU658147.1 CU658147.1 69 1.684 0.772 0.912 - - - - - - -
92. ptf1a ENSDARG00000014479 349 1.683 - - - - - - - 0.860 0.823 pancreas associated transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030616-579]
93. gng3 ENSDARG00000009553 2530 1.683 - 0.733 - - - - 0.950 - - guanine nucleotide binding protein (G protein), gamma 3 [Source:ZFIN;Acc:ZDB-GENE-010705-1]
94. calca ENSDARG00000056590 150 1.677 - 0.725 - - - - 0.952 - - calcitonin/calcitonin-related polypeptide, alpha [Source:ZFIN;Acc:ZDB-GENE-040718-173]
95. AP3B2 1874 1.676 - 0.774 - - 0.902 - - - - adaptor related protein complex 3 beta 2 subunit, transcript variant X2
96. tac3a ENSDARG00000093089, ENSDARG00000110723 75 1.676 - - - - - 0.860 0.816 - - tachykinin 3a [Source:ZFIN;Acc:ZDB-GENE-090313-253]
97. bicc2 ENSDARG00000076557 77 1.674 0.889 0.785 - - - - - - - bicaudal C homolog 2 [Source:ZFIN;Acc:ZDB-GENE-110110-3]
98. dlg4 88 1.673 - - - - - 0.891 0.782 - - discs large MAGUK scaffold protein 4, transcript variant X5
99. RNF208 ENSDARG00000078056 60 1.672 0.764 - - - - - 0.908 - - ring finger protein 208 [Source:HGNC Symbol;Acc:HGNC:25420]
100. gfra1b ENSDARG00000102564 821 1.67 0.767 - - - - - 0.903 - - gdnf family receptor alpha 1b [Source:ZFIN;Acc:ZDB-GENE-010226-3]

There are 1954 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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