Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for vrtn

Gene Name Gene ID Reads Annotation
vrtn ENSDARG00000061963, ENSDARG00000115943 42 vertebrae development associated [Source:ZFIN;Acc:ZDB-GENE-060929-700]










Genes with expression patterns similar to vrtn

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. vrtn ENSDARG00000061963, ENSDARG00000115943 42 8 1.000 1.000 1.000 1.000 1.000 - 1.000 1.000 1.000 vertebrae development associated [Source:ZFIN;Acc:ZDB-GENE-060929-700]
2. gucy1b3 92 2.802 1.000 1.000 - - - - 0.802 - - guanylate cyclase 1, soluble, beta 3
3. cdk20 ENSDARG00000003867 27 2.705 0.705 1.000 - - - - 1.000 - - cyclin-dependent kinase 20 [Source:ZFIN;Acc:ZDB-GENE-041212-84]
4. SCAMP5 SCAMP5 19 2 - 1.000 - - - - 1.000 - -
5. CLDN20 26 2 - 1.000 - - - - 1.000 - - claudin 20, transcript variant X2
6. zeb2b ENSDARG00000078416 23 2 - 1.000 - - - - 1.000 - - zinc finger E-box binding homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-080717-1]
7. zgc:110434 21 2 - 1.000 - - - - 1.000 - - zgc:110434
8. kif17 ENSDARG00000055238 12 2 - 1.000 - - - - 1.000 - - kinesin family member 17 [Source:ZFIN;Acc:ZDB-GENE-080724-12]
9. pax4 ENSDARG00000021336 29 1.957 - - 0.957 - - - 1.000 - - paired box 4 [Source:ZFIN;Acc:ZDB-GENE-041210-244]
10. si:dkey-220a11.9 si:dkey-220a11.9 10 1.933 - 1.000 - - - - - 0.933 -
11. zgc:114041 ENSDARG00000052109 76 1.922 - - 0.922 - - - 1.000 - - zgc:114041 [Source:ZFIN;Acc:ZDB-GENE-050706-122]
12. trhr2 ENSDARG00000093901, ENSDARG00000114177 67 1.904 - - 0.904 - - - 1.000 - - thyrotropin releasing hormone receptor 2 [Source:ZFIN;Acc:ZDB-GENE-050419-193]
13. wbscr27 wbscr27 70 1.859 - - 0.859 - - - 1.000 - -
14. NPPC ENSDARG00000068126 45 1.839 - 1.000 - - - - 0.839 - - natriuretic peptide C [Source:ZFIN;Acc:ZDB-GENE-070705-24]
15. KCNAB2 KCNAB2 129 1.822 - 1.000 - - - - 0.822 - -
16. NARS2 ENSDARG00000098441 57 1.812 0.918 - - - - - - 0.894 - asparaginyl-tRNA synthetase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-060929-596]
17. cacna1ab ENSDARG00000006923 12 1.766 - 1.000 - - - - 0.766 - - calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, b [Source:ZFIN;Acc:ZDB-GENE-090514-3]
18. gpsm1a ENSDARG00000092517 784 1.742 - - 0.742 - - - 1.000 - - G protein signaling modulator 1a [Source:ZFIN;Acc:ZDB-GENE-060526-302]
19. tagln3a ENSDARG00000079805 123 1.738 - 1.000 - - - - 0.738 - - transgelin 3a [Source:ZFIN;Acc:ZDB-GENE-060531-53]
20. CABZ01083834.1 CABZ01083834.1 38 1.737 - - - 0.760 - - - 0.977 -
21. zgc:110353 ENSDARG00000039443 80 1.716 - - - - - - 1.000 0.716 - zgc:110353 [Source:ZFIN;Acc:ZDB-GENE-050417-310]
22. hcst ENSDARG00000092074 172 1.708 - 1.000 - - - - - - 0.708 hematopoietic cell signal transducer [Source:ZFIN;Acc:ZDB-GENE-061130-1]
23. zgc:113691 ENSDARG00000038898 36 1.705 0.705 1.000 - - - - - - - zgc:113691 [Source:ZFIN;Acc:ZDB-GENE-050220-7]
24. uckl1a ENSDARG00000001686 21 1.705 0.705 1.000 - - - - - - - uridine-cytidine kinase 1-like 1a [Source:ZFIN;Acc:ZDB-GENE-040724-238]
25. CABZ01066439.2 CABZ01066439.2 5 1.705 0.705 1.000 - - - - - - -
26. lars2 ENSDARG00000075337 31 1.705 0.705 - - - - - 1.000 - - leucyl-tRNA synthetase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-070928-3]
27. hcrt ENSDARG00000070932 4 1.705 0.705 - - - - - 1.000 - - hypocretin (orexin) neuropeptide precursor [Source:ZFIN;Acc:ZDB-GENE-040324-1]
28. mink1 ENSDARG00000035360, ENSDARG00000112785 13 1.705 0.705 - - - - - 1.000 - - misshapen-like kinase 1 [Source:ZFIN;Acc:ZDB-GENE-060526-45]
29. BX469915.2 BX469915.2 48 1.705 0.705 1.000 - - - - - - -
30. rgs7 rgs7 208 1.691 - 0.946 - - - - - 0.745 -
31. ENSDARG00000086878 ENSDARG00000086878 332 1.679 0.781 0.898 - - - - - - -
32. SLC36A4 ENSDARG00000039661 175 1.672 - 0.877 0.795 - - - - - - solute carrier family 36 (proton/amino acid symporter), member 4 [Source:ZFIN;Acc:ZDB-GENE-050309-239]
33. spon2b ENSDARG00000002732 115 1.652 - 0.806 - - - - - 0.846 - spondin 2b, extracellular matrix protein [Source:ZFIN;Acc:ZDB-GENE-990415-161]
34. MDH1B ENSDARG00000018008 29 1.637 0.705 - - - - - - 0.932 - malate dehydrogenase 1B, NAD (soluble) [Source:ZFIN;Acc:ZDB-GENE-060929-384]
35. srxn1 ENSDARG00000079160 265 1.604 - - 0.896 - - - - 0.708 - sulfiredoxin 1 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-091230-2]
36. bco2b ENSDARG00000041715 13 1.594 0.705 0.889 - - - - - - - beta-carotene oxygenase 2b [Source:ZFIN;Acc:ZDB-GENE-060421-7448]
37. GMIP ENSDARG00000077249 43 1.587 0.705 - - - - - - 0.882 - GEM interacting protein [Source:ZFIN;Acc:ZDB-GENE-130530-823]
38. fank1 ENSDARG00000039657 9 1.569 0.705 - - - - - - - 0.864 fibronectin type III and ankyrin repeat domains 1 [Source:ZFIN;Acc:ZDB-GENE-130613-3]
39. neurod neurod 1189 1.564 - 0.816 - - - - 0.748 - -
40. shdb ENSDARG00000062109, ENSDARG00000111006 323 1.507 - 0.767 0.740 - - - - - - Src homology 2 domain containing transforming protein D, b [Source:ZFIN;Acc:ZDB-GENE-030131-6059]
41. dtnbb ENSDARG00000013020 280 1.504 - 0.756 - - - - - 0.748 - dystrobrevin, beta b [Source:ZFIN;Acc:ZDB-GENE-070117-3]
42. si:ch211-57m13.15 si:ch211-57m13.15 206 1.467 - - 0.744 - - - - 0.723 -
43. ccdc113 ENSDARG00000006981 67 1.43 - 0.707 - - 0.723 - - - - coiled-coil domain containing 113 [Source:ZFIN;Acc:ZDB-GENE-041010-163]
44. pcdh2ac ENSDARG00000099783 325 1.429 - 0.710 - - - - 0.719 - - protocadherin 2 alpha c [Source:ZFIN;Acc:ZDB-GENE-041118-12]
45. CABZ01061549.1 CABZ01061549.1 17 1.409 0.705 0.704 - - - - - - -
46. rims3 ENSDARG00000062305 202 1 - 1.000 - - - - - - - regulating synaptic membrane exocytosis 3 [Source:ZFIN;Acc:ZDB-GENE-060503-788]
47. CT583679.2 CT583679.2 10 1 - 1.000 - - - - - - -
48. brinp3b ENSDARG00000075352 14 1 - - - - - - 1.000 - - bone morphogenetic protein/retinoic acid inducible neural-specific 3b [Source:ZFIN;Acc:ZDB-GENE-121022-1]
49. si:dkey-19f21.8 si:dkey-19f21.8 12 1 - 1.000 - - - - - - -
50. si:ch211-209f23.3 ENSDARG00000095607 15 1 - - - - - - 1.000 - - si:ch211-209f23.3 [Source:ZFIN;Acc:ZDB-GENE-100921-45]
51. foxq1a ENSDARG00000030896 121 1 - 1.000 - - - - - - - forkhead box Q1a [Source:ZFIN;Acc:ZDB-GENE-070424-74]
52. CU570987.1 CU570987.1 7 1 - 1.000 - - - - - - -
53. rbfox3l rbfox3l 34 1 - 1.000 - - - - - - -
54. CABZ01084273.1 CABZ01084273.1 16 1 - 1.000 - - - - - - -
55. st8sia3 ENSDARG00000045301 3 1 - - - - - - 1.000 - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 [Source:ZFIN;Acc:ZDB-GENE-060228-4]
56. CU179703.1 CU179703.1 5 1 - 1.000 - - - - - - -
57. URB1 ENSDARG00000060308 78 1 - - - - - - 1.000 - - URB1 ribosome biogenesis 1 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-5181]
58. FAM150A 14 1 - - - - - - 1.000 - - family with sequence similarity 150 member A, transcript variant X2
59. BX548000.1 ENSDARG00000099044 45 1 - 1.000 - - - - - - -
60. CR450793.1 ENSDARG00000088927 6 1 - - - - - - 1.000 - - zinc finger protein 436-like [Source:NCBI gene;Acc:103911751]
61. lingo1b ENSDARG00000035899 86 1 - 1.000 - - - - - - - leucine rich repeat and Ig domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-040912-136]
62. si:ch211-286b5.9 ENSDARG00000086166 27 1 - 1.000 - - - - - - - si:ch211-286b5.9 [Source:ZFIN;Acc:ZDB-GENE-121214-63]
63. SRCIN1 SRCIN1 5 1 - 1.000 - - - - - - -
64. si:dkey-42i9.8 ENSDARG00000071541 17 1 - 1.000 - - - - - - - si:dkey-42i9.8 [Source:ZFIN;Acc:ZDB-GENE-050208-412]
65. si:dkey-97l20.5 si:dkey-97l20.5 33 1 - 1.000 - - - - - - -
66. zgc:165604 ENSDARG00000021241, ENSDARG00000116203 15 1 - 1.000 - - - - - - - zgc:165604 [Source:ZFIN;Acc:ZDB-GENE-070615-34]
67. CDH8 172 1 - 1.000 - - - - - - - cadherin 8
68. slc13a1 ENSDARG00000045638, ENSDARG00000114835 13 1 - - - - - - 1.000 - - solute carrier family 13 member 1 [Source:ZFIN;Acc:ZDB-GENE-031222-3]
69. si:ch211-113a14.15_1 2 1 - 1.000 - - - - - - - si:ch211-113a14.15
70. si:ch211-218c6.9 si:ch211-218c6.9 40 1 - 1.000 - - - - - - -
71. si:dkey-150k17.2 si:dkey-150k17.2 40 1 - - - - - - 1.000 - -
72. ptf1a ENSDARG00000014479 349 1 - 1.000 - - - - - - - pancreas associated transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030616-579]
73. mir29b-1 0 1 - 1.000 - - - - - - - microRNA 29b-1
74. cdh10 cdh10 38 1 - 1.000 - - - - - - -
75. ccdc14 ENSDARG00000098734 3 1 - 1.000 - - - - - - - coiled-coil domain containing 14 [Source:ZFIN;Acc:ZDB-GENE-120215-134]
76. cplx4a ENSDARG00000059978 6 1 - - - - - - 1.000 - - complexin 4a [Source:ZFIN;Acc:ZDB-GENE-060526-116]
77. si:dkey-122c11.4 si:dkey-122c11.4 13 1 - 1.000 - - - - - - -
78. PRICKLE2 PRICKLE2 69 1 - - - - - - 1.000 - -
79. BX004785.2 ENSDARG00000093487 10 1 - - - - - - 1.000 - -
80. ACTR3_1 ACTR3_1 2 1 - 1.000 - - - - - - -
81. RIMS1 RIMS1 9 1 - 1.000 - - - - - - -
82. fam219ab ENSDARG00000013813 591 1 - 1.000 - - - - - - - family with sequence similarity 219, member Ab [Source:ZFIN;Acc:ZDB-GENE-050522-213]
83. cyp2j20 ENSDARG00000094057 44 1 - 1.000 - - - - - - - cytochrome P450, family 2, subfamily J, polypeptide 20 [Source:ZFIN;Acc:ZDB-GENE-041210-324]
84. FP016199.1 FP016199.1 43 1 - - - - - - 1.000 - -
85. si:ch73-103b2.1 ENSDARG00000095944, ENSDARG00000099867 40 1 - 1.000 - - - - - - - si:ch73-103b2.1 [Source:ZFIN;Acc:ZDB-GENE-110408-42]
86. si:dkey-93h22.6 si:dkey-93h22.6 7 1 - 1.000 - - - - - - -
87. mcph1 ENSDARG00000058372 51 1 - - - - - - 1.000 - - microcephalin 1 [Source:ZFIN;Acc:ZDB-GENE-060421-6122]
88. PEG3_35 PEG3_35 52 1 - - - - - - 1.000 - -
89. FRMPD1 34 1 - 1.000 - - - - - - - FERM and PDZ domain containing 1, transcript variant X3
90. tmem91 ENSDARG00000068456 81 1 - 1.000 - - - - - - - transmembrane protein 91 [Source:ZFIN;Acc:ZDB-GENE-060503-581]
91. camk1db ENSDARG00000017446 47 1 - 1.000 - - - - - - - calcium/calmodulin-dependent protein kinase 1Db [Source:ZFIN;Acc:ZDB-GENE-070112-1872]
92. EXD1 ENSDARG00000098669 27 1 - - - - - - 1.000 - - exonuclease 3'-5' domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060825-267]
93. si:ch73-166n24.2 si:ch73-166n24.2 1 1 - 1.000 - - - - - - -
94. ppp1r37_1 ENSDARG00000078458 36 1 - - - - - - 1.000 - - protein phosphatase 1, regulatory subunit 37 [Source:ZFIN;Acc:ZDB-GENE-050208-7]
95. zgc:153654 ENSDARG00000060322 9 1 - 1.000 - - - - - - - zgc:153654 [Source:ZFIN;Acc:ZDB-GENE-060929-1102]
96. tekt1 ENSDARG00000101331 27 1 - 1.000 - - - - - - - tektin 1 [Source:ZFIN;Acc:ZDB-GENE-041114-99]
97. fhit_1 ENSDARG00000078195 91 1 - - - - - - 1.000 - - fragile histidine triad gene [Source:ZFIN;Acc:ZDB-GENE-040426-1703]
98. her3 ENSDARG00000076857 131 1 - 1.000 - - - - - - - hairy-related 3 [Source:ZFIN;Acc:ZDB-GENE-980526-204]
99. si:ch211-113a14.26_4 31 1 - - - - - - 1.000 - - si:ch211-113a14.26
100. si:rp71-7l19.6 si:rp71-7l19.6 12 1 - - - - - - 1.000 - -

There are 1206 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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