Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for vrk3

Gene Name Gene ID Reads Annotation
vrk3 ENSDARG00000036056 424 vaccinia related kinase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-246]










Genes with expression patterns similar to vrk3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. vrk3 ENSDARG00000036056 424 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 vaccinia related kinase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-246]
2. plekha3 ENSDARG00000056601 213 1.738 - 0.866 - - - - 0.872 - - pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1252]
3. mettl3 ENSDARG00000012827 728 1.725 - 0.901 - - - 0.824 - - - methyltransferase like 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9498]
4. ank3a ENSDARG00000061736 361 1.678 - 0.906 - - - 0.772 - - - ankyrin 3a [Source:ZFIN;Acc:ZDB-GENE-060621-1]
5. TRPM6 ENSDARG00000103454 15 1.65 - - - 0.857 - - 0.793 - - transient receptor potential cation channel, subfamily M, member 6 [Source:ZFIN;Acc:ZDB-GENE-111212-1]
6. TRIM14_7 TRIM14_7 381 1.635 - 0.799 - - - - 0.836 - -
7. caprin2 ENSDARG00000020749 39 1.633 - 0.852 - - - - 0.781 - - caprin family member 2 [Source:ZFIN;Acc:ZDB-GENE-040812-2]
8. xrcc5_1 ENSDARG00000099298 1533 1.625 - 0.884 - - - - 0.741 - - X-ray repair complementing defective repair in Chinese hamster cells 5 [Source:ZFIN;Acc:ZDB-GENE-041008-108]
9. C18H15orf59 C18H15orf59 80 1.616 - - - - - 0.775 0.841 - -
10. vti1b ENSDARG00000039270 295 1.616 - 0.775 - 0.841 - - - - - vesicle transport through interaction with t-SNAREs 1B [Source:ZFIN;Acc:ZDB-GENE-040426-1148]
11. pole ENSDARG00000058533, ENSDARG00000115430 381 1.611 - 0.809 - - - - 0.802 - - polymerase (DNA directed), epsilon [Source:ZFIN;Acc:ZDB-GENE-070705-557]
12. SLC41A2 SLC41A2 202 1.595 - 0.736 - - - - 0.859 - -
13. dclk2 dclk2 719 1.594 - - - 0.878 - 0.716 - - -
14. PPP1R16B ENSDARG00000079860 390 1.591 0.757 - - - - - 0.834 - - protein phosphatase 1, regulatory subunit 16B [Source:ZFIN;Acc:ZDB-GENE-131127-294]
15. EOGT ENSDARG00000022853 366 1.571 - - - 0.769 - 0.802 - - - EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase [Source:ZFIN;Acc:ZDB-GENE-120813-8]
16. hs3st1 82 1.569 - - - - - 0.782 0.787 - - heparan sulfate (glucosamine) 3-O-sulfotransferase 1, transcript variant X1
17. tmprss13a ENSDARG00000100969 84 1.568 0.704 0.864 - - - - - - - transmembrane serine protease 13a [Source:ZFIN;Acc:ZDB-GENE-090309-3]
18. ccl25b ENSDARG00000070873 454 1.566 - 0.861 - - - - 0.705 - - chemokine (C-C motif) ligand 25b [Source:ZFIN;Acc:ZDB-GENE-110222-2]
19. gpr173 ENSDARG00000042922 238 1.565 - 0.843 - - - 0.722 - - - G protein-coupled receptor 173 [Source:ZFIN;Acc:ZDB-GENE-000710-1]
20. KBTBD13_1 KBTBD13_1 116 1.556 - - - 0.810 - 0.746 - - -
21. ube2l3a ENSDARG00000110975, ENSDARG00000112087 2899 1.545 - 0.756 - 0.789 - - - - - ubiquitin-conjugating enzyme E2L 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2977]
22. rcn2 ENSDARG00000039378, ENSDARG00000110051, ENSDARG00000113764 61 1.545 0.801 - - - - - 0.744 - - reticulocalbin 2 [Source:ZFIN;Acc:ZDB-GENE-050706-62]
23. rdh8a ENSDARG00000028048 334 1.541 - 0.838 - - - - 0.703 - - retinol dehydrogenase 8a [Source:ZFIN;Acc:ZDB-GENE-021115-3]
24. MTERFD2 MTERFD2 140 1.54 - - - 0.780 - - 0.760 - -
25. dgcr14 1608 1.538 - 0.760 - - - - 0.778 - - DiGeorge syndrome critical region gene 14
26. meis3 ENSDARG00000002795 2509 1.531 - - - - - 0.716 0.815 - - myeloid ecotropic viral integration site 3 [Source:ZFIN;Acc:ZDB-GENE-010406-2]
27. snapc4 ENSDARG00000067673 81 1.524 0.791 - - - - - 0.733 - - small nuclear RNA activating complex, polypeptide 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5794]
28. gpr63 ENSDARG00000074540 242 1.511 - - 0.740 - - - 0.771 - - G protein-coupled receptor 63 [Source:ZFIN;Acc:ZDB-GENE-110411-183]
29. CABZ01074081.1 CABZ01074081.1 109 1.509 - 0.758 - - - - 0.751 - -
30. med18 ENSDARG00000041237 247 1.502 - - - - - 0.711 - 0.791 - mediator of RNA polymerase II transcription, subunit 18 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-1276]
31. tlr4bb ENSDARG00000022048, ENSDARG00000110914 2 1.497 0.704 - - - - - 0.793 - - toll-like receptor 4b, duplicate b [Source:ZFIN;Acc:ZDB-GENE-040219-9]
32. aven ENSDARG00000002894 49 1.497 0.704 - - - - - 0.793 - - apoptosis, caspase activation inhibitor [Source:ZFIN;Acc:ZDB-GENE-041001-171]
33. CSGALNACT1 CSGALNACT1 116 1.493 0.739 - 0.754 - - - - - -
34. CU183952.1 CU183952.1 32 1.487 0.704 - - - - - 0.783 - -
35. rab4a ENSDARG00000019144 192 1.483 - - - 0.781 - 0.702 - - - RAB4a, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-040525-1]
36. xrcc5 ENSDARG00000099298 835 1.478 - 0.717 - - - - 0.761 - - X-ray repair complementing defective repair in Chinese hamster cells 5 [Source:ZFIN;Acc:ZDB-GENE-041008-108]
37. TMEM74 26 1.464 - - - - - 0.732 0.732 - - transmembrane protein 74, transcript variant X3
38. wdr54 ENSDARG00000010248 245 1.461 - - - - - 0.727 0.734 - - WD repeat domain 54 [Source:ZFIN;Acc:ZDB-GENE-040801-151]
39. GLIPR1 GLIPR1 37 1.432 0.704 - - - - - 0.728 - -
40. prkab1a ENSDARG00000044183 264 1.42 0.704 - - - - - 0.716 - - protein kinase, AMP-activated, beta 1 non-catalytic subunit, a [Source:ZFIN;Acc:ZDB-GENE-040718-377]
41. cyba ENSDARG00000018283 702 1.416 - 0.708 - - - - 0.708 - - cytochrome b-245, alpha polypeptide [Source:ZFIN;Acc:ZDB-GENE-040426-1526]
42. si:ch211-80h18.1 ENSDARG00000078522 1941 1.414 0.704 - - - - - 0.710 - - si:ch211-80h18.1 [Source:ZFIN;Acc:ZDB-GENE-070705-257]
43. crygs1 ENSDARG00000042992 45 0.954 0.954 - - - - - - - - crystallin, gamma S1 [Source:ZFIN;Acc:ZDB-GENE-050223-4]
44. si:ch211-110p13.9 ENSDARG00000093821 82 0.951 - - - 0.951 - - - - - si:ch211-110p13.9 [Source:ZFIN;Acc:ZDB-GENE-060526-9]
45. FP236168.1 FP236168.1 150 0.948 - 0.948 - - - - - - -
46. bbs5 ENSDARG00000039827 211 0.946 - - - - - - 0.946 - - Bardet-Biedl syndrome 5 [Source:ZFIN;Acc:ZDB-GENE-040426-1083]
47. BX927369.1 ENSDARG00000105047 21 0.946 - - - - - - 0.946 - -
48. mcat ENSDARG00000016613, ENSDARG00000096473 140 0.938 - - - - - - 0.938 - - malonyl CoA:ACP acyltransferase (mitochondrial) [Source:ZFIN;Acc:ZDB-GENE-041111-231]
49. casp6l1 ENSDARG00000025608, ENSDARG00000117004 107 0.937 - 0.937 - - - - - - - caspase 6, apoptosis-related cysteine peptidase, like 1 [Source:ZFIN;Acc:ZDB-GENE-041010-48]
50. aff3 ENSDARG00000079575 578 0.936 - 0.936 - - - - - - - AF4/FMR2 family, member 3 [Source:ZFIN;Acc:ZDB-GENE-030219-193]
51. nucb1 ENSDARG00000054833 2009 0.927 - - - 0.927 - - - - - nucleobindin 1 [Source:ZFIN;Acc:ZDB-GENE-060825-222]
52. rab33ba ENSDARG00000052290 914 0.924 - - - 0.924 - - - - - RAB33B, member RAS oncogene family a [Source:ZFIN;Acc:ZDB-GENE-050809-122]
53. si:dkey-23a23.2 ENSDARG00000023036 123 0.921 - - - 0.921 - - - - - si:dkey-23a23.2 [Source:ZFIN;Acc:ZDB-GENE-060503-158]
54. zgc:112982 ENSDARG00000001829, ENSDARG00000110590, ENSDARG00000111057 2330 0.92 - 0.920 - - - - - - - zgc:112982 [Source:ZFIN;Acc:ZDB-GENE-050306-55]
55. pcp4b 1080 0.916 - 0.916 - - - - - - - Purkinje cell protein 4b
56. si:ch211-13o20.3 si:ch211-13o20.3 113 0.91 - 0.910 - - - - - - -
57. raly ENSDARG00000059972 481 0.909 - - - - - 0.909 - - - RALY heterogeneous nuclear ribonucleoprotein [Source:ZFIN;Acc:ZDB-GENE-041010-127]
58. sass6 ENSDARG00000058346 225 0.909 - - - - - - 0.909 - - SAS-6 centriolar assembly protein [Source:ZFIN;Acc:ZDB-GENE-040426-2784]
59. arhgef1a ENSDARG00000040380 239 0.907 - 0.907 - - - - - - - Rho guanine nucleotide exchange factor (GEF) 1a [Source:ZFIN;Acc:ZDB-GENE-030722-5]
60. adam8a ENSDARG00000001452 316 0.907 - - - 0.907 - - - - - ADAM metallopeptidase domain 8a [Source:ZFIN;Acc:ZDB-GENE-030616-622]
61. CR318593.1 CR318593.1 290 0.906 - 0.906 - - - - - - -
62. mkrn2 ENSDARG00000007630 127 0.905 0.905 - - - - - - - - makorin, ring finger protein, 2 [Source:ZFIN;Acc:ZDB-GENE-020213-2]
63. kifc3 ENSDARG00000054978 1220 0.904 - 0.904 - - - - - - - kinesin family member C3 [Source:ZFIN;Acc:ZDB-GENE-030131-3724]
64. dnaaf2 ENSDARG00000103132 24 0.902 - - - - - - 0.902 - - dynein, axonemal, assembly factor 2 [Source:ZFIN;Acc:ZDB-GENE-050809-128]
65. sfrp5 ENSDARG00000039041 1777 0.901 - 0.901 - - - - - - - secreted frizzled-related protein 5 [Source:ZFIN;Acc:ZDB-GENE-011108-2]
66. btbd7 ENSDARG00000003069 609 0.901 - 0.901 - - - - - - - BTB (POZ) domain containing 7 [Source:ZFIN;Acc:ZDB-GENE-030131-4477]
67. gramd1a ENSDARG00000076689 1148 0.901 - 0.901 - - - - - - - GRAM domain containing 1A [Source:ZFIN;Acc:ZDB-GENE-060503-688]
68. sbno1 ENSDARG00000099080 10 0.9 0.900 - - - - - - - - strawberry notch homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-080522-2]
69. zgc:112242 11 0.9 0.900 - - - - - - - - zgc:112242
70. dclre1c ENSDARG00000045704, ENSDARG00000110444, ENSDARG00000113866 100 0.9 0.900 - - - - - - - - DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-041210-72]
71. zgc:113295_1 ENSDARG00000074768, ENSDARG00000103947 21 0.9 0.900 - - - - - - - - zgc:113295 [Source:ZFIN;Acc:ZDB-GENE-050320-122]
72. CR788316.4 ENSDARG00000105829 297 0.9 - - - - - - 0.900 - - neoverrucotoxin subunit beta-like [Source:NCBI gene;Acc:100004951]
73. adm2a ENSDARG00000045708, ENSDARG00000111740 246 0.9 0.900 - - - - - - - - adrenomedullin 2a [Source:ZFIN;Acc:ZDB-GENE-041210-100]
74. FBXL3 FBXL3 1769 0.899 - 0.899 - - - - - - -
75. FP236789.2 FP236789.2 335 0.899 - 0.899 - - - - - - -
76. ptpn3 ENSDARG00000055784 436 0.898 - 0.898 - - - - - - - protein tyrosine phosphatase, non-receptor type 3 [Source:ZFIN;Acc:ZDB-GENE-030131-2934]
77. yeats4 ENSDARG00000045874 1168 0.898 - 0.898 - - - - - - - YEATS domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-040718-252]
78. itsn1 ENSDARG00000000086 684 0.898 - 0.898 - - - - - - - intersectin 1 (SH3 domain protein) [Source:ZFIN;Acc:ZDB-GENE-030616-226]
79. cops4 ENSDARG00000043732 1508 0.897 - 0.897 - - - - - - - COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis) [Source:ZFIN;Acc:ZDB-GENE-030131-4317]
80. mettl25 ENSDARG00000045754 36 0.896 - - - - - - 0.896 - - methyltransferase like 25 [Source:ZFIN;Acc:ZDB-GENE-041210-90]
81. exoc4 ENSDARG00000004336 32 0.896 - - - - - - 0.896 - - exocyst complex component 4 [Source:ZFIN;Acc:ZDB-GENE-041210-112]
82. setmar ENSDARG00000074836 29 0.896 - - - - - - 0.896 - - SET domain and mariner transposase fusion gene [Source:ZFIN;Acc:ZDB-GENE-080204-61]
83. ttpal ENSDARG00000070644, ENSDARG00000112925 471 0.895 - 0.895 - - - - - - - tocopherol (alpha) transfer protein-like [Source:ZFIN;Acc:ZDB-GENE-030131-296]
84. mettl6 ENSDARG00000070085 366 0.895 - 0.895 - - - - - - - methyltransferase like 6 [Source:ZFIN;Acc:ZDB-GENE-040426-926]
85. qsox1 ENSDARG00000039459 320 0.895 - 0.895 - - - - - - - quiescin Q6 sulfhydryl oxidase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7019]
86. zgc:152938 ENSDARG00000102586 97 0.894 - 0.894 - - - - - - - zgc:152938 [Source:ZFIN;Acc:ZDB-GENE-061013-458]
87. THEM6_1 ENSDARG00000103914 469 0.894 - 0.894 - - - - - - - thioesterase superfamily member 6 [Source:HGNC Symbol;Acc:HGNC:29656]
88. sfmbt2 ENSDARG00000045519 251 0.893 - 0.893 - - - - - - - Scm like with four mbt domains 2 [Source:ZFIN;Acc:ZDB-GENE-041210-196]
89. si:dkeyp-7b3.1 si:dkeyp-7b3.1 615 0.891 - 0.891 - - - - - - -
90. INPP5K INPP5K 137 0.891 - 0.891 - - - - - - -
91. gb:ai877918 ENSDARG00000100179 173 0.891 - - - - - - 0.891 - - expressed sequence AI877918 [Source:ZFIN;Acc:ZDB-GENE-090506-8]
92. arl5a ENSDARG00000018627, ENSDARG00000117003 588 0.89 - 0.890 - - - - - - - ADP-ribosylation factor-like 5A [Source:ZFIN;Acc:ZDB-GENE-040718-28]
93. BX664622.1 ENSDARG00000101754 39 0.89 - - - - - - 0.890 - -
94. MIIP ENSDARG00000088346 382 0.889 - 0.889 - - - - - - - migration and invasion inhibitory protein [Source:ZFIN;Acc:ZDB-GENE-130620-1]
95. ints2 ENSDARG00000069085, ENSDARG00000101876 1249 0.889 - - - - - - 0.889 - - integrator complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-050522-148]
96. abcb8 ENSDARG00000056672 589 0.888 - 0.888 - - - - - - - ATP-binding cassette, sub-family B (MDR/TAP), member 8 [Source:ZFIN;Acc:ZDB-GENE-050410-6]
97. tctex1d2 ENSDARG00000054255 320 0.887 - 0.887 - - - - - - - Tctex1 domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-081104-219]
98. FP236789.1 ENSDARG00000105406 57 0.887 - - - - - - 0.887 - -
99. ddrgk1_1 ENSDARG00000037172 1563 0.885 - 0.885 - - - - - - - DDRGK domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1050]
100. si:dkey-10g2.5 si:dkey-10g2.5 72 0.885 - 0.885 - - - - - - -

There are 1402 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA