Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for vps13d

Gene Name Gene ID Reads Annotation
vps13d ENSDARG00000017986 183 vacuolar protein sorting 13 homolog D (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050912-1]










Genes with expression patterns similar to vps13d

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. vps13d ENSDARG00000017986 183 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 vacuolar protein sorting 13 homolog D (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050912-1]
2. odf3l2 36 2.534 - 0.796 - - - - 0.810 0.928 - outer dense fiber of sperm tails 3-like 2
3. LRTM1 ENSDARG00000098742 21 1.943 - 1.000 0.943 - - - - - - leucine rich repeats and transmembrane domains 1 [Source:ZFIN;Acc:ZDB-GENE-161221-2]
4. si:dkeyp-4f2.2 si:dkeyp-4f2.2 53 1.796 - 0.903 0.893 - - - - - -
5. zgc:171422 ENSDARG00000104715 255 1.789 - - - 0.901 - - 0.888 - - zgc:171422 [Source:ZFIN;Acc:ZDB-GENE-080204-95]
6. tmprss15 ENSDARG00000079393 25 1.78 - 0.903 - - - - 0.877 - - transmembrane serine protease 15 [Source:ZFIN;Acc:ZDB-GENE-091204-83]
7. acap3b ENSDARG00000099240 24 1.776 - 0.903 - - - - 0.873 - - ArfGAP with coiled-coil, ankyrin repeat and PH domains 3b [Source:ZFIN;Acc:ZDB-GENE-070209-274]
8. serpinb1l2 ENSDARG00000070396 37 1.77 - - 0.943 - - - 0.827 - - serpin peptidase inhibitor, clade B (ovalbumin), member 1, like 2 [Source:ZFIN;Acc:ZDB-GENE-041001-117]
9. hcfc1a ENSDARG00000015990, ENSDARG00000111404 59 1.768 - - 0.906 - - - 0.862 - - host cell factor C1a [Source:ZFIN;Acc:ZDB-GENE-030912-10]
10. polm ENSDARG00000103470 49 1.767 - - 0.940 - - - 0.827 - - polymerase (DNA directed), mu [Source:ZFIN;Acc:ZDB-GENE-040426-911]
11. CCHCR1 CCHCR1 238 1.767 - 0.827 - 0.940 - - - - -
12. furinb ENSDARG00000070971 213 1.752 - - - 0.871 - - - 0.881 - furin (paired basic amino acid cleaving enzyme) b [Source:ZFIN;Acc:ZDB-GENE-040901-2]
13. pphln1 ENSDARG00000045692 1023 1.747 - - - 0.845 - - - 0.902 - periphilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1873]
14. arhgap15 ENSDARG00000062349 28 1.726 - 0.903 - - - - - 0.823 - Rho GTPase activating protein 15 [Source:ZFIN;Acc:ZDB-GENE-070912-314]
15. edil3 edil3 24 1.722 - 0.903 0.819 - - - - - -
16. rpap3 ENSDARG00000087962 22 1.713 - 0.903 0.810 - - - - - - RNA polymerase II associated protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-928]
17. CABZ01073740.1 CABZ01073740.1 27 1.712 - - - - - - 0.834 0.878 -
18. si:ch211-26b3.4 ENSDARG00000075491 50 1.708 - 0.903 0.805 - - - - - - si:ch211-26b3.4 [Source:ZFIN;Acc:ZDB-GENE-081104-60]
19. btr22 ENSDARG00000100539 137 1.699 - - - - - - 0.827 0.872 - bloodthirsty-related gene family, member 22 [Source:ZFIN;Acc:ZDB-GENE-080402-4]
20. CLDND1_1 CLDND1_1 50 1.694 - - 0.867 - - - 0.827 - -
21. si:dkey-163m14.7 65 1.686 - 0.903 0.783 - - - - - - si:dkey-163m14.7
22. FP236168.1 FP236168.1 150 1.676 - - - - - - - 0.894 0.782
23. HMCES ENSDARG00000077471, ENSDARG00000110218, ENSDARG00000111784 242 1.667 - - - 0.799 - - 0.868 - - 5-hydroxymethylcytosine binding, ES cell specific [Source:ZFIN;Acc:ZDB-GENE-070620-10]
24. npas2 ENSDARG00000016536, ENSDARG00000116993 35 1.661 - 0.834 - - - - 0.827 - - neuronal PAS domain protein 2 [Source:ZFIN;Acc:ZDB-GENE-030408-3]
25. C14H5orf45 C14H5orf45 83 1.656 - - - - - - 0.770 0.886 -
26. camk4 ENSDARG00000005372 118 1.651 - - - - - - 0.780 0.871 - calcium/calmodulin-dependent protein kinase IV [Source:ZFIN;Acc:ZDB-GENE-050417-76]
27. si:ch211-135f11.1 166 1.651 - 0.765 - - - - - 0.886 - si:ch211-135f11.1, transcript variant X3
28. BX004890.2 BX004890.2 84 1.651 0.783 - 0.868 - - - - - -
29. FAM132B FAM132B 39 1.649 - 0.903 - - - - 0.746 - -
30. aptx ENSDARG00000027143 87 1.647 - 0.776 - - - - - 0.871 - aprataxin [Source:ZFIN;Acc:ZDB-GENE-040628-2]
31. BX324003.2 ENSDARG00000109802 178 1.646 - - - 0.834 - - 0.812 - -
32. ANGEL1 ENSDARG00000077567 38 1.643 - 0.807 0.836 - - - - - - angel homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-111020-12]
33. si:ch211-10m5.3 si:ch211-10m5.3 10 1.643 - 0.903 - - - - 0.740 - -
34. si:dkey-103i16.6 ENSDARG00000062893, ENSDARG00000116729 108 1.641 - 0.876 - - - - - 0.765 - si:dkey-103i16.6 [Source:ZFIN;Acc:ZDB-GENE-061207-46]
35. lrp2bp ENSDARG00000040478 21 1.623 - 0.796 - - - - 0.827 - - LRP2 binding protein [Source:ZFIN;Acc:ZDB-GENE-070615-41]
36. trip4 ENSDARG00000098074 79 1.622 - - - 0.898 - - 0.724 - - thyroid hormone receptor interactor 4 [Source:ZFIN;Acc:ZDB-GENE-040724-92]
37. GLIPR1 GLIPR1 37 1.619 - - 0.910 - - - 0.709 - -
38. CU929225.1 CU929225.1 104 1.618 - - - - - - 0.827 - 0.791
39. AL929022.2 AL929022.2 567 1.615 - - - 0.750 - - - 0.865 -
40. si:dkey-178e17.3 ENSDARG00000058658 271 1.61 - - 0.724 - - - - 0.886 - si:dkey-178e17.3 [Source:ZFIN;Acc:ZDB-GENE-081104-335]
41. kcnk18 ENSDARG00000057049, ENSDARG00000110571, ENSDARG00000112385 118 1.61 - - - 0.869 - 0.741 - - - potassium channel, subfamily K, member 18 [Source:ZFIN;Acc:ZDB-GENE-100405-2]
42. galnt13 ENSDARG00000099227 1059 1.603 0.809 - - - - - 0.794 - - UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 [Source:ZFIN;Acc:ZDB-GENE-091204-444]
43. aven ENSDARG00000002894 49 1.602 - - 0.775 - - - 0.827 - - apoptosis, caspase activation inhibitor [Source:ZFIN;Acc:ZDB-GENE-041001-171]
44. mak ENSDARG00000059287 144 1.599 - - - - - 0.740 - 0.859 - male germ cell-associated kinase [Source:ZFIN;Acc:ZDB-GENE-030131-7279]
45. nalcn ENSDARG00000001835 294 1.598 - - - 0.894 - - 0.704 - - sodium leak channel, non-selective [Source:ZFIN;Acc:ZDB-GENE-050410-12]
46. col4a4 ENSDARG00000002831 803 1.597 - - - 0.889 - - - - 0.708 collagen, type IV, alpha 4 [Source:ZFIN;Acc:ZDB-GENE-101001-1]
47. ficd ENSDARG00000035595 129 1.593 0.791 - - - - - - 0.802 - FIC domain containing [Source:ZFIN;Acc:ZDB-GENE-030131-6588]
48. tecpr2 ENSDARG00000060835 491 1.59 - - - 0.872 - - - - 0.718 tectonin beta-propeller repeat containing 2 [Source:ZFIN;Acc:ZDB-GENE-060503-358]
49. setd6 ENSDARG00000043986, ENSDARG00000113991 194 1.588 0.730 - - - - - - 0.858 - SET domain containing 6 [Source:ZFIN;Acc:ZDB-GENE-030131-1067]
50. rabggta ENSDARG00000061024 332 1.577 - - 0.753 0.824 - - - - - Rab geranylgeranyltransferase subunit alpha [Source:ZFIN;Acc:ZDB-GENE-060929-1042]
51. atpaf2 ENSDARG00000056270, ENSDARG00000115757 658 1.576 - - - 0.744 - - - 0.832 - ATP synthase mitochondrial F1 complex assembly factor 2 [Source:ZFIN;Acc:ZDB-GENE-050411-18]
52. isg20l2 ENSDARG00000102266 167 1.575 - 0.708 - - - - 0.867 - - interferon stimulated exonuclease gene 20-like 2 [Source:ZFIN;Acc:ZDB-GENE-070928-8]
53. gpr63 ENSDARG00000074540 242 1.572 0.825 - - - - - 0.747 - - G protein-coupled receptor 63 [Source:ZFIN;Acc:ZDB-GENE-110411-183]
54. TMEM184B TMEM184B 1280 1.57 - - - 0.719 - - - 0.851 -
55. BICD2 ENSDARG00000075571 401 1.569 - 0.772 - 0.797 - - - - - bicaudal D homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-120717-1]
56. asb3 ENSDARG00000005246 317 1.569 - - - - 0.770 - - 0.799 - ankyrin repeat and SOCS box containing 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6142]
57. efnb2b ENSDARG00000074050 77 1.558 - - 0.707 - - - 0.851 - - ephrin-B2b [Source:ZFIN;Acc:ZDB-GENE-010618-1]
58. snx18b ENSDARG00000044246, ENSDARG00000110012 51 1.556 - - 0.764 - - - 0.792 - - sorting nexin 18b [Source:ZFIN;Acc:ZDB-GENE-080213-6]
59. CU896555.1 CU896555.1 27 1.549 - 0.722 - - - - 0.827 - -
60. CR788316.4 ENSDARG00000105829 297 1.522 - - 0.732 - - - 0.790 - - neoverrucotoxin subunit beta-like [Source:NCBI gene;Acc:100004951]
61. TMEM216 ENSDARG00000091576 357 1.505 - 0.792 0.713 - - - - - - transmembrane protein 216 [Source:HGNC Symbol;Acc:HGNC:25018]
62. si:dkey-204f11.49p si:dkey-204f11.49p 97 1.499 - 0.722 - 0.777 - - - - -
63. FAM35A FAM35A 1091 1.498 - 0.754 - - - - - 0.744 -
64. anapc2 ENSDARG00000105035 239 1.495 - - 0.753 - - - - 0.742 - anaphase promoting complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-081104-256]
65. RABEPK ENSDARG00000112165 112 1.493 - 0.715 - - - - 0.778 - - Rab9 effector protein with kelch motifs [Source:ZFIN;Acc:ZDB-GENE-040704-52]
66. map7d1a_1 ENSDARG00000098802 208 1.468 - - - 0.735 - - 0.733 - - MAP7 domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-060503-22]
67. setmar ENSDARG00000074836 29 1.462 - 0.722 - - - - 0.740 - - SET domain and mariner transposase fusion gene [Source:ZFIN;Acc:ZDB-GENE-080204-61]
68. si:ch211-216l23.2 ENSDARG00000069122, ENSDARG00000115838 1365 1.459 - 0.750 - - - - 0.709 - - si:ch211-216l23.2 [Source:ZFIN;Acc:ZDB-GENE-030131-3806]
69. eva1ba ENSDARG00000102701 1480 1.439 - - - - - - - 0.713 0.726 eva-1 homolog Ba (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-030131-8941]
70. grna ENSDARG00000004954 189 1 - 1.000 - - - - - - - granulin a [Source:ZFIN;Acc:ZDB-GENE-030131-8434]
71. si:dkey-29n10.3 si:dkey-29n10.3 66 1 - 1.000 - - - - - - -
72. si:ch211-238e22.4 ENSDARG00000094500 78 1 - 1.000 - - - - - - - si:ch211-238e22.4 [Source:ZFIN;Acc:ZDB-GENE-030131-3632]
73. si:ch211-220i18.4 ENSDARG00000030262 10 1 - 1.000 - - - - - - - si:ch211-220i18.4 [Source:ZFIN;Acc:ZDB-GENE-090312-151]
74. POLQ ENSDARG00000044622, ENSDARG00000110374 94 1 - 1.000 - - - - - - - polymerase (DNA directed), theta [Source:ZFIN;Acc:ZDB-GENE-040724-232]
75. AAK1 AAK1 3 1 - 1.000 - - - - - - -
76. cfp ENSDARG00000094451 211 1 - 1.000 - - - - - - - complement factor properdin [Source:ZFIN;Acc:ZDB-GENE-030131-9247]
77. ttc25_1 ENSDARG00000058140 32 1 - 1.000 - - - - - - - tetratricopeptide repeat domain 25 [Source:ZFIN;Acc:ZDB-GENE-040426-995]
78. si:dkey-14o1.18 si:dkey-14o1.18 23 1 - 1.000 - - - - - - -
79. myb ENSDARG00000053666, ENSDARG00000114024 58 1 - 1.000 - - - - - - - v-myb avian myeloblastosis viral oncogene homolog [Source:ZFIN;Acc:ZDB-GENE-991110-14]
80. poln ENSDARG00000103961, ENSDARG00000113911 57 1 - 1.000 - - - - - - - polymerase (DNA directed) nu [Source:ZFIN;Acc:ZDB-GENE-100917-1]
81. ERC1 ENSDARG00000076014 10 1 - 1.000 - - - - - - - ELKS/RAB6-interacting/CAST family member 1 [Source:HGNC Symbol;Acc:HGNC:17072]
82. ttll3 ENSDARG00000053728 7 0.978 - 0.978 - - - - - - - tubulin tyrosine ligase-like family, member 3 [Source:ZFIN;Acc:ZDB-GENE-060616-182]
83. NAV1_1 NAV1_1 35 0.978 - 0.978 - - - - - - -
84. vcpip1 ENSDARG00000060177 56 0.978 - 0.978 - - - - - - - valosin containing protein (p97)/p47 complex interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-070912-613]
85. CU638737.1 CU638737.1 17 0.978 - 0.978 - - - - - - -
86. pik3cg ENSDARG00000017757 157 0.975 - 0.975 - - - - - - - phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma [Source:ZFIN;Acc:ZDB-GENE-040426-2532]
87. efemp2b ENSDARG00000020811 116 0.956 - - - 0.956 - - - - - EGF containing fibulin extracellular matrix protein 2b [Source:ZFIN;Acc:ZDB-GENE-030219-125]
88. CABZ01067868.1 CABZ01067868.1 235 0.956 - - - 0.956 - - - - -
89. BX649554.3_1 BX649554.3_1 1071 0.956 - - - 0.956 - - - - -
90. cetn3 ENSDARG00000011825 1087 0.953 - - - 0.953 - - - - - centrin 3 [Source:ZFIN;Acc:ZDB-GENE-050522-152]
91. si:dkey-29b11.3 ENSDARG00000087388 29 0.953 - - 0.953 - - - - - - si:dkey-29b11.3 [Source:ZFIN;Acc:ZDB-GENE-100922-178]
92. dpp6b ENSDARG00000024744 234 0.949 - - - 0.949 - - - - - dipeptidyl-peptidase 6b [Source:ZFIN;Acc:ZDB-GENE-070705-88]
93. BX324003.1 ENSDARG00000096499 50 0.948 - 0.948 - - - - - - -
94. zgc:162184 ENSDARG00000077217 47 0.947 - - 0.947 - - - - - - zgc:162184 [Source:ZFIN;Acc:ZDB-GENE-070424-83]
95. npas3b npas3b 1446 0.947 - 0.947 - - - - - - -
96. TRIM35_11 TRIM35_11 23 0.946 - 0.946 - - - - - - -
97. CLEC17A CLEC17A 42 0.945 - - 0.945 - - - - - -
98. ROCK2 ROCK2 8 0.945 - - 0.945 - - - - - -
99. si:ch211-105d18.8 si:ch211-105d18.8 38 0.945 - - 0.945 - - - - - -
100. cbln4 ENSDARG00000061240 67 0.943 - - - - - - - 0.943 - cerebellin 4 precursor [Source:ZFIN;Acc:ZDB-GENE-080204-58]

There are 1438 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA