Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for vldlr

Gene Name Gene ID Reads Annotation
vldlr ENSDARG00000006257 772 very low density lipoprotein receptor [Source:ZFIN;Acc:ZDB-GENE-040426-803]










Genes with expression patterns similar to vldlr

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. vldlr ENSDARG00000006257 772 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 very low density lipoprotein receptor [Source:ZFIN;Acc:ZDB-GENE-040426-803]
2. ssbp4 ENSDARG00000056483 10196 2.266 - - - - 0.787 0.713 - 0.766 - single stranded DNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-469]
3. magoh ENSDARG00000038635, ENSDARG00000109837 2880 2.117 - - - - - - 0.704 0.710 0.703 mago homolog, exon junction complex subunit [Source:ZFIN;Acc:ZDB-GENE-041216-1]
4. gabpb2a ENSDARG00000007943 1570 1.781 - - - - 0.997 - 0.784 - - GA binding protein transcription factor subunit beta 2a [Source:ZFIN;Acc:ZDB-GENE-030131-5733]
5. srcap ENSDARG00000005236 1740 1.763 - - - - 0.991 - 0.772 - - Snf2-related CREBBP activator protein [Source:ZFIN;Acc:ZDB-GENE-041008-127]
6. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 1.758 - - - - 0.975 - - 0.783 - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
7. hcfc1b ENSDARG00000012519 3633 1.748 - - - - 0.978 - 0.770 - - host cell factor C1b [Source:ZFIN;Acc:ZDB-GENE-030131-2411]
8. nudt3a ENSDARG00000016256 2713 1.734 - - - - 0.988 - 0.746 - - nudix (nucleoside diphosphate linked moiety X)-type motif 3a [Source:ZFIN;Acc:ZDB-GENE-040426-792]
9. grb2b ENSDARG00000038059 9050 1.731 - - - - 0.955 0.776 - - - growth factor receptor-bound protein 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1975]
10. snrpe ENSDARG00000033175 7462 1.724 - - - - 0.979 - - 0.745 - small nuclear ribonucleoprotein polypeptide E [Source:ZFIN;Acc:ZDB-GENE-040426-1112]
11. nfyba ENSDARG00000039185 1804 1.699 - - - - 0.972 - 0.727 - - nuclear transcription factor Y, beta a [Source:ZFIN;Acc:ZDB-GENE-050417-13]
12. maf1 ENSDARG00000013122 3365 1.69 - - - - 0.984 - 0.706 - - MAF1 homolog, negative regulator of RNA polymerase III [Source:ZFIN;Acc:ZDB-GENE-040426-2788]
13. timm10 ENSDARG00000069116 4459 1.685 - - - - 0.961 - 0.724 - - translocase of inner mitochondrial membrane 10 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040718-427]
14. ash2l ENSDARG00000060392 4916 1.676 - - - - 0.959 - 0.717 - - ash2 like, histone lysine methyltransferase complex subunit [Source:ZFIN;Acc:ZDB-GENE-030131-494]
15. cltcb ENSDARG00000090716 5544 1.67 - - - - 0.966 - 0.704 - - clathrin, heavy chain b (Hc) [Source:ZFIN;Acc:ZDB-GENE-050227-12]
16. srsf6a ENSDARG00000013729 8576 1.607 - - - - 0.877 - 0.730 - - serine/arginine-rich splicing factor 6a [Source:ZFIN;Acc:ZDB-GENE-040426-2824]
17. snrpc ENSDARG00000009871 9567 1.595 - - - - 0.868 - 0.727 - - small nuclear ribonucleoprotein polypeptide C [Source:ZFIN;Acc:ZDB-GENE-020419-26]
18. ipo7 ENSDARG00000035751 7095 1.594 - - - - 0.818 - 0.776 - - importin 7 [Source:ZFIN;Acc:ZDB-GENE-030131-458]
19. h2afx ENSDARG00000029406 2116 1.592 - - - - - 0.807 0.785 - - H2A histone family, member X [Source:ZFIN;Acc:ZDB-GENE-040426-987]
20. her4.3 ENSDARG00000070770 613 1.568 - - - - - - - 0.852 0.716 hairy-related 4, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-081030-7]
21. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 8110 1.558 - - - - - 0.796 0.762 - - ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
22. zgc:114119 ENSDARG00000098992 1090 1.545 - - - - - 0.795 0.750 - - zgc:114119 [Source:ZFIN;Acc:ZDB-GENE-050913-56]
23. ttk ENSDARG00000041361 3911 1.543 - - - - 0.842 - 0.701 - - ttk protein kinase [Source:ZFIN;Acc:ZDB-GENE-030123-1]
24. ELMO1 ENSDARG00000098753 114 1.542 - - - - - - 0.718 0.824 - engulfment and cell motility 1 (ced-12 homolog, C. elegans) [Source:ZFIN;Acc:ZDB-GENE-040426-2069]
25. mta2 ENSDARG00000013031 2932 1.519 - - - - - - 0.771 0.748 - metastasis associated 1 family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4803]
26. ccdc136b ENSDARG00000057921, ENSDARG00000075513 387 1.517 - - - - - - 0.775 0.742 - coiled-coil domain containing 136b [Source:ZFIN;Acc:ZDB-GENE-081104-244]
27. sin3b ENSDARG00000062472 2025 1.516 - - - - - 0.787 - - 0.729 SIN3 transcription regulator family member B [Source:ZFIN;Acc:ZDB-GENE-030131-8264]
28. xpo7 ENSDARG00000005540, ENSDARG00000110221 4566 1.509 - - - - - - 0.790 - 0.719 exportin 7 [Source:ZFIN;Acc:ZDB-GENE-060628-2]
29. ift52 ENSDARG00000045025 606 1.507 0.701 - - - - - 0.806 - - intraflagellar transport 52 homolog (Chlamydomonas) [Source:ZFIN;Acc:ZDB-GENE-040614-3]
30. pigs ENSDARG00000017813 718 1.503 0.801 0.702 - - - - - - - phosphatidylinositol glycan anchor biosynthesis, class S [Source:ZFIN;Acc:ZDB-GENE-060929-436]
31. mllt11 ENSDARG00000071026 2518 1.502 - - - - - - - 0.760 0.742 MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
32. Sep-06 Sep-06 5465 1.5 - - - - - - 0.745 - 0.755
33. si:dkey-253d23.5 ENSDARG00000058566 237 1.498 - - - - - - 0.745 0.753 - si:dkey-253d23.5 [Source:ZFIN;Acc:ZDB-GENE-050208-729]
34. RSPH1 289 1.495 0.789 - - - - - 0.706 - - radial spoke head 1 homolog (Chlamydomonas), transcript variant X2
35. zbtb5 1484 1.494 - - - - - 0.709 - 0.785 - zinc finger and BTB domain containing 5
36. rnf26 ENSDARG00000074074 762 1.49 0.746 0.744 - - - - - - - ring finger protein 26 [Source:ZFIN;Acc:ZDB-GENE-060727-1]
37. mob3c ENSDARG00000043705 306 1.484 0.761 0.723 - - - - - - - MOB kinase activator 3C [Source:ZFIN;Acc:ZDB-GENE-040704-32]
38. tia1 ENSDARG00000052536, ENSDARG00000114478 4392 1.483 - - - - - - 0.700 0.783 - TIA1 cytotoxic granule-associated RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-1506]
39. h3f3a 66671 1.482 - - - - - - 0.716 0.766 - H3 histone, family 3A, transcript variant X1
40. prdm16 prdm16 1346 1.479 0.779 - - - - - 0.700 - -
41. pfn2l ENSDARG00000012682 21690 1.479 - - - - 0.725 - 0.754 - - profilin 2 like [Source:ZFIN;Acc:ZDB-GENE-030131-34]
42. lpar6a ENSDARG00000062552 1348 1.475 - 0.721 - - - 0.754 - - - lysophosphatidic acid receptor 6a [Source:ZFIN;Acc:ZDB-GENE-061013-343]
43. GPN1 ENSDARG00000043928 566 1.473 - - - - - 0.709 0.764 - - GPN-loop GTPase 1 [Source:ZFIN;Acc:ZDB-GENE-040801-154]
44. med25 ENSDARG00000038005, ENSDARG00000115713 1305 1.472 - - - - - - 0.737 - 0.735 mediator complex subunit 25 [Source:ZFIN;Acc:ZDB-GENE-040426-2850]
45. rrp1 ENSDARG00000103337 2366 1.47 - - - - - - 0.758 - 0.712 ribosomal RNA processing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9837]
46. sfswap ENSDARG00000005980, ENSDARG00000112551 1022 1.469 0.762 - - - - 0.707 - - - splicing factor SWAP [Source:ZFIN;Acc:ZDB-GENE-040426-931]
47. acsl3a ENSDARG00000032079 897 1.468 - 0.741 - - - 0.727 - - - acyl-CoA synthetase long chain family member 3a [Source:ZFIN;Acc:ZDB-GENE-050420-181]
48. znf131 ENSDARG00000068400, ENSDARG00000110506 920 1.464 - - - - - 0.758 0.706 - - zinc finger protein 131 [Source:ZFIN;Acc:ZDB-GENE-040426-1563]
49. ldb1a ENSDARG00000010137 3035 1.454 - - - - - - - 0.745 0.709 LIM domain binding 1a [Source:ZFIN;Acc:ZDB-GENE-990415-138]
50. tcf7l1b ENSDARG00000007369 2785 1.452 - - - - - - 0.737 - 0.715 transcription factor 7 like 1b [Source:ZFIN;Acc:ZDB-GENE-991110-10]
51. tle2 5014 1.45 - 0.731 - - - - 0.719 - - transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila), transcript variant X4
52. zmynd8 ENSDARG00000007601 405 1.449 0.702 - - - - - 0.747 - - zinc finger, MYND-type containing 8 [Source:ZFIN;Acc:ZDB-GENE-041119-1]
53. coe2 coe2 1633 1.448 - - - - - - 0.711 0.737 -
54. kpnb3 ENSDARG00000040245 7967 1.447 - - - - 0.723 - 0.724 - - karyopherin (importin) beta 3 [Source:ZFIN;Acc:ZDB-GENE-030424-2]
55. ewsr1a ENSDARG00000020258, ENSDARG00000113252 11221 1.446 - - - - - - 0.721 - 0.725 EWS RNA-binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2317]
56. prpsap2 ENSDARG00000019326 1463 1.446 - - - - - - 0.743 0.703 - phosphoribosyl pyrophosphate synthetase-associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2077]
57. arl9 ENSDARG00000071881 403 1.446 0.715 0.731 - - - - - - - ADP-ribosylation factor-like 9 [Source:ZFIN;Acc:ZDB-GENE-060825-210]
58. pdzd11 ENSDARG00000053194, ENSDARG00000116591 1858 1.446 - 0.722 - - - - - 0.724 - PDZ domain containing 11 [Source:ZFIN;Acc:ZDB-GENE-040426-2544]
59. lsm14ab ENSDARG00000100553 3837 1.442 - - - - - 0.717 0.725 - - LSM14A mRNA processing body assembly factor b [Source:ZFIN;Acc:ZDB-GENE-040426-2462]
60. TAF15 ENSDARG00000070019 5102 1.442 - - - - - - - 0.715 0.727 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-061215-102]
61. fam57ba ENSDARG00000026875 504 1.441 - - - - - - - 0.734 0.707 family with sequence similarity 57, member Ba [Source:ZFIN;Acc:ZDB-GENE-030131-2046]
62. ptbp2b ENSDARG00000015901 2458 1.438 - - - - - - 0.712 - 0.726 polypyrimidine tract binding protein 2b [Source:ZFIN;Acc:ZDB-GENE-060810-49]
63. foxk2 ENSDARG00000030583 2982 1.437 - - - - - - 0.710 0.727 - forkhead box K2 [Source:ZFIN;Acc:ZDB-GENE-030131-2861]
64. si:dkey-66i24.7 ENSDARG00000096714 308 1.434 - - - - - - 0.719 0.715 - si:dkey-66i24.7 [Source:ZFIN;Acc:ZDB-GENE-130603-106]
65. tfap2b ENSDARG00000012667 746 1.43 0.729 - - - - - - 0.701 - transcription factor AP-2 beta [Source:ZFIN;Acc:ZDB-GENE-050417-394]
66. eif4h ENSDARG00000042252 6742 1.427 - - - - - - 0.727 - 0.700 eukaryotic translation initiation factor 4h [Source:ZFIN;Acc:ZDB-GENE-010328-19]
67. hnrnpub ENSDARG00000004735 16496 1.424 - - - - - - 0.719 - 0.705 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
68. g3bp1 ENSDARG00000017741 7622 1.422 - - - - - - 0.710 - 0.712 GTPase activating protein (SH3 domain) binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7452]
69. mospd1 ENSDARG00000028614, ENSDARG00000112883 697 1.421 - - - - - 0.702 - 0.719 - motile sperm domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2691]
70. fscn1a ENSDARG00000059680 3999 1.414 - - - - - - 0.701 0.713 - fascin actin-bundling protein 1a [Source:ZFIN;Acc:ZDB-GENE-031009-1]
71. git2b ENSDARG00000042791, ENSDARG00000111846 1332 0.998 - - - - 0.998 - - - - G protein-coupled receptor kinase interacting ArfGAP 2b [Source:ZFIN;Acc:ZDB-GENE-070112-2192]
72. ripk4 ENSDARG00000043211 775 0.998 - - - - 0.998 - - - - receptor-interacting serine-threonine kinase 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2042]
73. tmem234 ENSDARG00000078333 488 0.998 - - - - 0.998 - - - - transmembrane protein 234 [Source:ZFIN;Acc:ZDB-GENE-090313-326]
74. errfi1 errfi1 979 0.998 - - - - 0.998 - - - -
75. CABZ01073954.1 CABZ01073954.1 258 0.998 - - - - 0.998 - - - -
76. si:dkey-114e9.1 si:dkey-114e9.1 233 0.998 - - - - 0.998 - - - -
77. sema3fa ENSDARG00000011163 759 0.998 - - - - 0.998 - - - - sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa [Source:ZFIN;Acc:ZDB-GENE-050513-1]
78. si:dkey-30k6.5 ENSDARG00000057238 617 0.998 - - - - 0.998 - - - - si:dkey-30k6.5 [Source:ZFIN;Acc:ZDB-GENE-091204-299]
79. pbx1a ENSDARG00000100494 854 0.998 - - - - 0.998 - - - - pre-B-cell leukemia homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-000405-1]
80. si:dkey-70e17.2 si:dkey-70e17.2 371 0.998 - - - - 0.998 - - - -
81. kcnq5a ENSDARG00000069954 492 0.998 - - - - 0.998 - - - - potassium voltage-gated channel, KQT-like subfamily, member 5a [Source:ZFIN;Acc:ZDB-GENE-090312-185]
82. bin2b ENSDARG00000010255 2649 0.998 - - - - 0.998 - - - - bridging integrator 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5598]
83. synm ENSDARG00000062350, ENSDARG00000113948, ENSDARG00000114029 483 0.998 - - - - 0.998 - - - - synemin, intermediate filament protein [Source:ZFIN;Acc:ZDB-GENE-050419-81]
84. slc46a1 ENSDARG00000026149 297 0.998 - - - - 0.998 - - - - solute carrier family 46 (folate transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1012]
85. C3H16orf89 C3H16orf89 449 0.997 - - - - 0.997 - - - -
86. nrg2a ENSDARG00000077818 854 0.997 - - - - 0.997 - - - - neuregulin 2a [Source:ZFIN;Acc:ZDB-GENE-070615-10]
87. trim24 ENSDARG00000103350 431 0.997 - - - - 0.997 - - - - tripartite motif containing 24 [Source:ZFIN;Acc:ZDB-GENE-030131-5913]
88. epc1 epc1 1164 0.997 - - - - 0.997 - - - -
89. elk3 ENSDARG00000018688, ENSDARG00000110853 1108 0.996 - - - - 0.996 - - - - ELK3, ETS-domain protein [Source:ZFIN;Acc:ZDB-GENE-030716-2]
90. acvr2aa ENSDARG00000011188 1454 0.996 - - - - 0.996 - - - - activin A receptor type 2Aa [Source:ZFIN;Acc:ZDB-GENE-980526-227]
91. RNF111 ENSDARG00000078802 1357 0.996 - - - - 0.996 - - - - ring finger protein 111 [Source:ZFIN;Acc:ZDB-GENE-070808-2]
92. ERO1LB ERO1LB 1433 0.996 - - - - 0.996 - - - -
93. slc48a1b ENSDARG00000026109 1427 0.996 - - - - 0.996 - - - - solute carrier family 48 (heme transporter), member 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8226]
94. tpt1 ENSDARG00000092693 1110 0.996 - - - - 0.996 - - - - tumor protein, translationally-controlled 1 [Source:ZFIN;Acc:ZDB-GENE-990603-10]
95. slc4a2b ENSDARG00000052330 1900 0.996 - - - - 0.996 - - - - solute carrier family 4 (anion exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-030429-14]
96. inpp4aa ENSDARG00000063352 1297 0.995 - - - - 0.995 - - - - inositol polyphosphate-4-phosphatase type I Aa [Source:ZFIN;Acc:ZDB-GENE-060312-5]
97. slc9a3r1 slc9a3r1 743 0.995 - - - - 0.995 - - - -
98. wdr43 ENSDARG00000077264 1992 0.995 - - - - 0.995 - - - - WD repeat domain 43 [Source:ZFIN;Acc:ZDB-GENE-021231-3]
99. rfc5 ENSDARG00000035634 974 0.995 - - - - 0.995 - - - - replication factor C (activator 1) 5 [Source:ZFIN;Acc:ZDB-GENE-040907-1]
100. ttc27 ENSDARG00000007918 1228 0.995 - - - - 0.995 - - - - tetratricopeptide repeat domain 27 [Source:ZFIN;Acc:ZDB-GENE-030102-1]

There are 1017 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA