Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for vim

Gene Name Gene ID Reads Annotation
vim ENSDARG00000010008 3551 vimentin [Source:ZFIN;Acc:ZDB-GENE-011212-3]










Genes with expression patterns similar to vim

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. vim ENSDARG00000010008 3551 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 vimentin [Source:ZFIN;Acc:ZDB-GENE-011212-3]
2. stmn1b ENSDARG00000033655 9491 3.219 0.847 0.700 - - - 0.776 0.896 - - stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
3. snap25a ENSDARG00000020609 4537 3.162 0.787 - 0.704 - - 0.886 0.785 - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
4. ptbp2b ENSDARG00000015901 2458 3.113 0.718 0.818 - - - 0.785 0.792 - - polypyrimidine tract binding protein 2b [Source:ZFIN;Acc:ZDB-GENE-060810-49]
5. nova2 ENSDARG00000017673 7685 2.859 0.951 - - - - 0.967 0.941 - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
6. nes ENSDARG00000088805 2710 2.854 0.954 - - - - 0.965 0.935 - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
7. CU928222.1 ENSDARG00000097436 1662 2.834 0.950 - - - - 0.934 0.950 - -
8. nrarpb ENSDARG00000018958 6225 2.807 0.911 - - - - 0.974 0.922 - - NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
9. elavl3 ENSDARG00000014420 8644 2.787 - 0.958 - - - 0.905 0.924 - - ELAV like neuron-specific RNA binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-980526-76]
10. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 2.784 0.949 - - - - 0.972 0.863 - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
11. myt1b ENSDARG00000102879 5411 2.779 0.883 - - - - 0.963 0.933 - - myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
12. sox19a ENSDARG00000010770, ENSDARG00000110497 4683 2.774 0.938 - - - - 0.933 0.903 - - SRY (sex determining region Y)-box 19a [Source:ZFIN;Acc:ZDB-GENE-980526-102]
13. gfap ENSDARG00000025301 5584 2.765 0.954 - - - - 0.949 0.862 - - glial fibrillary acidic protein [Source:ZFIN;Acc:ZDB-GENE-990914-3]
14. neurog1 ENSDARG00000056130 3924 2.76 0.924 - - - - 0.929 0.907 - - neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]
15. CDK5R1 CDK5R1 562 2.759 0.848 - - - - 0.948 0.963 - -
16. slc18a3a ENSDARG00000006356 1285 2.754 0.872 - - - - 0.976 0.906 - - solute carrier family 18 (vesicular acetylcholine transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-060929-990]
17. pcdh1gc5 ENSDARG00000104826 10052 2.746 0.907 - - - - 0.925 0.914 - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
18. irx1b ENSDARG00000056594 2224 2.743 0.910 - - - - 0.890 0.943 - - iroquois homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-010716-1]
19. vgf ENSDARG00000105529 247 2.741 0.864 - - - - 0.959 0.918 - - VGF nerve growth factor inducible [Source:ZFIN;Acc:ZDB-GENE-121009-2]
20. ncana 1537 2.739 0.847 - - - - 0.904 0.988 - - neurocan a
21. AGO1 ENSDARG00000092644 4521 2.738 0.882 - - - - 0.947 0.909 - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
22. TUBA1A ENSDARG00000001889 25294 2.727 0.835 - - - - 0.957 0.935 - - tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
23. hmp19 2554 2.721 0.905 - - - - 0.910 0.906 - - HMP19 protein
24. fyna ENSDARG00000011370 1679 2.72 0.942 - - - - 0.939 0.839 - - FYN proto-oncogene, Src family tyrosine kinase a [Source:ZFIN;Acc:ZDB-GENE-030903-5]
25. slc1a3a ENSDARG00000104431 9888 2.717 0.804 - - - - 0.933 0.980 - - solute carrier family 1 (glial high affinity glutamate transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2159]
26. si:ch73-21g5.7 ENSDARG00000093156 9412 2.715 0.950 - - - - 0.848 0.917 - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
27. tmie ENSDARG00000069423 305 2.714 0.958 - - - - 0.858 0.898 - - transmembrane inner ear [Source:ZFIN;Acc:ZDB-GENE-061207-9]
28. pou3f2b ENSDARG00000076262, ENSDARG00000112713 2439 2.714 0.827 - - - - 0.908 0.979 - - POU class 3 homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-980526-370]
29. tuba1c ENSDARG00000055216 8384 2.71 0.916 - - - - 0.940 0.854 - - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
30. C8H1orf106 C8H1orf106 2690 2.705 0.850 - - - - 0.891 0.964 - -
31. rfx4 ENSDARG00000026395, ENSDARG00000116861 2047 2.702 0.779 - - - - 0.945 0.978 - - regulatory factor X, 4 [Source:ZFIN;Acc:ZDB-GENE-040909-2]
32. epha4b ENSDARG00000011600 3110 2.701 0.925 - - - - 0.944 0.832 - - eph receptor A4b [Source:ZFIN;Acc:ZDB-GENE-030826-6]
33. atp1b4 ENSDARG00000053262 1337 2.697 0.850 - - - - 0.872 0.975 - - ATPase Na+/K+ transporting subunit beta 4 [Source:ZFIN;Acc:ZDB-GENE-070412-1]
34. chat chat 463 2.695 0.877 - - - - 0.896 0.922 - -
35. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 2.693 0.950 - - - - 0.904 0.839 - - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
36. EFCC1 ENSDARG00000077826 1359 2.683 0.957 - - - - 0.899 0.827 - - EF-hand and coiled-coil domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-120813-3]
37. atp6v0cb ENSDARG00000036577 3472 2.682 0.828 - - - - 0.945 0.909 - - ATPase H+ transporting V0 subunit cb [Source:ZFIN;Acc:ZDB-GENE-030131-4127]
38. CHL1 CHL1 1553 2.68 0.900 - - - - 0.929 0.851 - -
39. her2 ENSDARG00000038205 3219 2.678 0.957 - - - - 0.815 0.906 - - hairy-related 2 [Source:ZFIN;Acc:ZDB-GENE-980526-274]
40. cplx2 ENSDARG00000061918, ENSDARG00000111920 3673 2.678 0.819 0.954 - - - - 0.905 - - complexin 2 [Source:ZFIN;Acc:ZDB-GENE-081113-1]
41. plp1a ENSDARG00000103732 3544 2.676 0.892 - - - - 0.869 0.915 - - proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
42. nadl1.1 1200 2.67 0.850 - - - - 0.955 0.865 - - neural adhesion molecule L1.1, transcript variant X1
43. atp1a1b ENSDARG00000019856, ENSDARG00000115121 1953 2.655 0.848 - - - - 0.928 0.879 - - ATPase Na+/K+ transporting subunit alpha 1b [Source:ZFIN;Acc:ZDB-GENE-001212-5]
44. tmem35 ENSDARG00000052567 5685 2.647 0.793 - - - - 0.925 0.929 - - transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
45. mllt11 ENSDARG00000071026 2518 2.645 0.844 - - - - 0.907 0.894 - - MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
46. syt11a ENSDARG00000057913 1145 2.644 0.851 - - - - 0.880 0.913 - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
47. cldn5a ENSDARG00000043716 3865 2.643 0.816 - - - - 0.890 0.937 - - claudin 5a [Source:ZFIN;Acc:ZDB-GENE-040426-2442]
48. SPOCK1 ENSDARG00000074644 794 2.643 0.837 - - - - 0.902 0.904 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:ZFIN;Acc:ZDB-GENE-110428-1]
49. clstn1 ENSDARG00000031720 5286 2.643 0.882 - - - - 0.872 0.889 - - calsyntenin 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1064]
50. sypa ENSDARG00000042974, ENSDARG00000110528 3217 2.642 0.884 - - - - 0.893 0.865 - - synaptophysin a [Source:ZFIN;Acc:ZDB-GENE-031104-2]
51. nbeaa ENSDARG00000070080 862 2.634 0.884 - - - - 0.892 0.858 - - neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
52. her4.1 ENSDARG00000056732 1264 2.633 0.821 - - - - 0.919 0.893 - - hairy-related 4, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-980526-521]
53. zgc:113531 ENSDARG00000038794 2063 2.622 0.777 - - - - 0.865 0.980 - - zgc:113531 [Source:ZFIN;Acc:ZDB-GENE-050320-52]
54. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 2.62 0.911 - - - - 0.911 0.798 - - methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
55. tox ENSDARG00000032317 9126 2.618 0.899 - - - - 0.859 0.860 - - thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]
56. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 2.613 0.909 - - - - 0.895 0.809 - - cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
57. celsr2 ENSDARG00000019726, ENSDARG00000094388 4002 2.611 0.751 - - - - 0.891 0.969 - - cadherin, EGF LAG seven-pass G-type receptor 2 [Source:ZFIN;Acc:ZDB-GENE-070122-2]
58. st8sia2 ENSDARG00000018788 2183 2.609 0.803 - - - - 0.925 0.881 - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-020919-4]
59. ZFHX3 ENSDARG00000103057 7759 2.604 0.773 - - - - 0.964 0.867 - - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
60. Sep-03 Sep-03 1124 2.6 0.847 - - - - 0.908 0.845 - -
61. msi1 ENSDARG00000010710 2634 2.599 0.749 - - - - 0.969 0.881 - - musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]
62. negr1 ENSDARG00000021607 1051 2.599 0.825 - - - - 0.848 0.926 - - neuronal growth regulator 1 [Source:ZFIN;Acc:ZDB-GENE-040822-27]
63. ctnnd2b ENSDARG00000003779 964 2.597 0.864 - - - - 0.793 0.940 - - catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
64. isl1 ENSDARG00000004023 981 2.596 0.750 - - - - 0.914 0.932 - - ISL LIM homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-112]
65. mir10d-1 mir10d-1 860 2.593 0.840 - - - - 0.946 0.807 - -
66. BX511121.1 ENSDARG00000029997 1774 2.592 0.802 - - - - 0.851 0.939 - -
67. lmo3 ENSDARG00000008720, ENSDARG00000114518 4773 2.589 0.754 - - - - 0.875 0.960 - - LIM domain only 3 [Source:ZFIN;Acc:ZDB-GENE-050522-201]
68. ckbb ENSDARG00000043257 3503 2.583 0.863 - - - - 0.912 0.808 - - creatine kinase, brain b [Source:ZFIN;Acc:ZDB-GENE-020103-2]
69. fzd3a ENSDARG00000021664 1958 2.577 0.902 - - - - 0.758 0.917 - - frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
70. pax6a ENSDARG00000103379 3061 2.576 0.890 - - - - 0.929 0.757 - - paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
71. hmgb1b ENSDARG00000030479 10398 2.576 0.791 - - - - 0.922 0.863 - - high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]
72. hmgb3a ENSDARG00000056725 15668 2.571 0.822 - - - - 0.945 0.804 - - high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
73. eno2 ENSDARG00000014287 2162 2.569 0.781 - - - - 0.841 0.947 - - enolase 2 [Source:ZFIN;Acc:ZDB-GENE-040704-27]
74. nhlh2 ENSDARG00000025495 1860 2.569 0.798 - - - - 0.848 0.923 - - nescient helix loop helix 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1809]
75. stx1b ENSDARG00000000503 2724 2.569 0.831 - - - - 0.922 0.816 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
76. CABZ01111990.1 CABZ01111990.1 4374 2.568 0.828 - - - - 0.881 0.859 - -
77. dnajc5aa ENSDARG00000042948 2885 2.566 0.769 - - - - 0.903 0.894 - - DnaJ (Hsp40) homolog, subfamily C, member 5aa [Source:ZFIN;Acc:ZDB-GENE-031113-20]
78. dpysl2b ENSDARG00000032083, ENSDARG00000109782 3487 2.566 0.752 - - - - 0.885 0.929 - - dihydropyrimidinase-like 2b [Source:ZFIN;Acc:ZDB-GENE-031105-1]
79. map7d2a ENSDARG00000068480 513 2.562 0.841 - - - - 0.891 0.830 - - MAP7 domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-060526-150]
80. BX957337.1 BX957337.1 1685 2.557 0.846 - - - - 0.884 0.827 - -
81. pcsk1nl ENSDARG00000076170 1232 2.555 0.848 - - - - 0.849 0.858 - - proprotein convertase subtilisin/kexin type 1 inhibitor, like [Source:ZFIN;Acc:ZDB-GENE-090427-2]
82. hnrnpa3 ENSDARG00000059351 453 2.555 0.905 - - - - 0.850 0.800 - - heterogeneous nuclear ribonucleoprotein A3 [Source:ZFIN;Acc:ZDB-GENE-060224-1]
83. npas3b npas3b 1446 2.554 0.809 - - - - 0.781 0.964 - -
84. UBE2QL1 ENSDARG00000079276 3474 2.553 0.860 - - - - 0.868 0.825 - - ubiquitin-conjugating enzyme E2Q family-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8137]
85. st18 663 2.551 0.776 - - - - 0.858 0.917 - - suppression of tumorigenicity 18, zinc finger
86. si:dkey-169l5.3 si:dkey-169l5.3 239 2.55 0.893 - - - - 0.747 0.910 - -
87. gap43 ENSDARG00000099744 4114 2.55 0.738 - - - - 0.931 0.881 - - growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
88. mapk12b ENSDARG00000006409 2246 2.547 0.834 - - - - 0.817 0.896 - - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
89. SEMA7A ENSDARG00000078707 465 2.544 0.837 - - - - 0.930 0.777 - - semaphorin 7A [Source:ZFIN;Acc:ZDB-GENE-030131-3633]
90. her12 ENSDARG00000032963 754 2.542 0.837 - - - - 0.808 0.897 - - hairy-related 12 [Source:ZFIN;Acc:ZDB-GENE-040824-5]
91. nell2b ENSDARG00000062797 854 2.542 0.767 - - - - 0.930 0.845 - - neural EGFL like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-8026]
92. islr2 ENSDARG00000051875, ENSDARG00000109523 2288 2.541 0.807 - - - - 0.817 0.917 - - immunoglobulin superfamily containing leucine-rich repeat 2 [Source:ZFIN;Acc:ZDB-GENE-050320-95]
93. stmn2b ENSDARG00000070537 1586 2.537 0.844 - - - - 0.930 0.763 - - stathmin 2b [Source:ZFIN;Acc:ZDB-GENE-050522-207]
94. slc8a2b ENSDARG00000100592 598 2.536 0.870 - - - - 0.801 0.865 - - solute carrier family 8 (sodium/calcium exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-050419-209]
95. gad2 ENSDARG00000015537 724 2.534 0.842 - - - - 0.882 0.810 - - glutamate decarboxylase 2 [Source:ZFIN;Acc:ZDB-GENE-030909-9]
96. kcnc3a ENSDARG00000055855 1821 2.533 0.831 - - - - 0.899 0.803 - - potassium voltage-gated channel, Shaw-related subfamily, member 3a [Source:ZFIN;Acc:ZDB-GENE-100901-1]
97. ptprnb ENSDARG00000077047 2743 2.532 0.836 - - - - 0.848 0.848 - - protein tyrosine phosphatase, receptor type, Nb [Source:ZFIN;Acc:ZDB-GENE-100505-1]
98. rheb ENSDARG00000090213 1432 2.531 0.751 - - - - 0.840 0.940 - - Ras homolog, mTORC1 binding [Source:ZFIN;Acc:ZDB-GENE-040426-1690]
99. dpysl3 ENSDARG00000002587 4381 2.53 0.756 - - - - 0.930 0.844 - - dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
100. gad1b ENSDARG00000027419 440 2.527 0.934 - - - - 0.714 0.879 - - glutamate decarboxylase 1b [Source:ZFIN;Acc:ZDB-GENE-030909-3]

There are 1489 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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