Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for vars

Gene Name Gene ID Reads Annotation
vars ENSDARG00000044575 1367 valyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-010601-1]










Genes with expression patterns similar to vars

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. vars ENSDARG00000044575 1367 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 valyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-010601-1]
2. jph1a ENSDARG00000058603 2852 2.494 0.988 0.726 - - - - 0.780 - - junctophilin 1a [Source:ZFIN;Acc:ZDB-GENE-040724-233]
3. rrp12 ENSDARG00000022410 2236 2.215 - 0.770 0.735 - - - 0.710 - - ribosomal RNA processing 12 homolog [Source:ZFIN;Acc:ZDB-GENE-050706-182]
4. anxa6 ENSDARG00000013335 3588 1.819 0.986 - - - - - 0.833 - - annexin A6 [Source:ZFIN;Acc:ZDB-GENE-030707-3]
5. ssrp1a ENSDARG00000037397, ENSDARG00000116441 3999 1.759 0.983 0.776 - - - - - - - structure specific recognition protein 1a [Source:ZFIN;Acc:ZDB-GENE-031118-9]
6. col11a1b ENSDARG00000009014 9998 1.753 0.983 - - - - - 0.770 - - collagen, type XI, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-070912-607]
7. polr3e ENSDARG00000037358 1864 1.739 - 0.889 - - - 0.850 - - - polymerase (RNA) III (DNA directed) polypeptide E [Source:ZFIN;Acc:ZDB-GENE-030131-8462]
8. wdr3 ENSDARG00000011079 1403 1.715 0.994 0.721 - - - - - - - WD repeat domain 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9830]
9. epas1b ENSDARG00000057671, ENSDARG00000113561, ENSDARG00000115742 1306 1.7 0.995 0.705 - - - - - - - endothelial PAS domain protein 1b [Source:ZFIN;Acc:ZDB-GENE-060607-11]
10. sgcb ENSDARG00000052341 4168 1.694 0.983 0.711 - - - - - - - sarcoglycan, beta (dystrophin-associated glycoprotein) [Source:ZFIN;Acc:ZDB-GENE-030131-6695]
11. tob1b ENSDARG00000021372 7048 1.681 0.951 0.730 - - - - - - - transducer of ERBB2, 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2151]
12. eif1axa ENSDARG00000029003, ENSDARG00000114914 3973 1.674 0.962 0.712 - - - - - - - eukaryotic translation initiation factor 1A X-linked a [Source:ZFIN;Acc:ZDB-GENE-041010-185]
13. MSS51 ENSDARG00000075463 428 1.634 - 0.778 - - - - 0.856 - - MSS51 mitochondrial translational activator [Source:ZFIN;Acc:ZDB-GENE-130530-775]
14. mrpl10 ENSDARG00000045091, ENSDARG00000112205 1187 1.623 - 0.862 - - - - 0.761 - - mitochondrial ribosomal protein L10 [Source:ZFIN;Acc:ZDB-GENE-050320-19]
15. znf106a ENSDARG00000016651 6049 1.617 - 0.872 - - - - 0.745 - - zinc finger protein 106a [Source:ZFIN;Acc:ZDB-GENE-040718-21]
16. eif2s1b ENSDARG00000052178 11961 1.616 0.857 - - - - - 0.759 - - eukaryotic translation initiation factor 2, subunit 1 alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-283]
17. myom1a ENSDARG00000061249 10230 1.612 0.869 - - - - - 0.743 - - myomesin 1a (skelemin) [Source:ZFIN;Acc:ZDB-GENE-030131-2856]
18. chrnd ENSDARG00000019342 2728 1.602 - 0.799 - - - - 0.803 - - cholinergic receptor, nicotinic, delta (muscle) [Source:ZFIN;Acc:ZDB-GENE-030131-6665]
19. kcnma1a ENSDARG00000079840 2584 1.598 - 0.882 - - - - 0.716 - - potassium large conductance calcium-activated channel, subfamily M, alpha member 1a [Source:ZFIN;Acc:ZDB-GENE-070202-9]
20. nmrk2 ENSDARG00000067848 10293 1.575 - 0.821 - - - - 0.754 - - nicotinamide riboside kinase 2 [Source:ZFIN;Acc:ZDB-GENE-040912-44]
21. ntmt1 ENSDARG00000022399 5779 1.563 - 0.790 - - - - 0.773 - - N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2055]
22. ITGB1BP2 ENSDARG00000030176 2472 1.554 - 0.745 - - - - 0.809 - - integrin subunit beta 1 binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6154]
23. zgc:66479 ENSDARG00000008732 3347 1.552 - 0.745 - - - - 0.807 - - zgc:66479 [Source:ZFIN;Acc:ZDB-GENE-031030-10]
24. xirp2a ENSDARG00000071113 7113 1.546 - 0.773 - - - - 0.773 - - xin actin binding repeat containing 2a [Source:ZFIN;Acc:ZDB-GENE-040108-7]
25. ryr3 ENSDARG00000071331 6795 1.544 - 0.767 - - - - 0.777 - - ryanodine receptor 3 [Source:ZFIN;Acc:ZDB-GENE-041001-165]
26. cmya5 ENSDARG00000061379 1423 1.543 - 0.807 - - - - 0.736 - - cardiomyopathy associated 5 [Source:ZFIN;Acc:ZDB-GENE-070630-1]
27. klhl40a ENSDARG00000039052 2537 1.54 - 0.786 - - - - 0.754 - - kelch-like family member 40a [Source:ZFIN;Acc:ZDB-GENE-050916-1]
28. alpk3a ENSDARG00000078989 1992 1.534 - 0.758 - - - - 0.776 - - alpha-kinase 3a [Source:ZFIN;Acc:ZDB-GENE-050419-48]
29. CU638714.1 ENSDARG00000100303 2132 1.528 - 0.731 - - - - 0.797 - -
30. zbtb17 ENSDARG00000074548 661 1.522 - 0.803 - - - 0.719 - - - zinc finger and BTB domain containing 17 [Source:ZFIN;Acc:ZDB-GENE-090313-240]
31. si:ch211-242b18.1 ENSDARG00000054723 2929 1.519 - 0.777 - - - - 0.742 - - si:ch211-242b18.1 [Source:ZFIN;Acc:ZDB-GENE-030131-1518]
32. nol12 ENSDARG00000038027 2288 1.519 - 0.750 - - - - - 0.769 - nucleolar protein 12 [Source:ZFIN;Acc:ZDB-GENE-040426-1035]
33. pbxip1a ENSDARG00000071015 4960 1.518 - 0.763 - - - - 0.755 - - pre-B-cell leukemia homeobox interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-060503-871]
34. chrna1 ENSDARG00000009021 2931 1.513 - 0.771 - - - - 0.742 - - cholinergic receptor, nicotinic, alpha 1 (muscle) [Source:ZFIN;Acc:ZDB-GENE-980526-137]
35. fitm1 ENSDARG00000056464 1759 1.512 - 0.746 - - - - 0.766 - - fat storage-inducing transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-050306-28]
36. timm8b ENSDARG00000055708 7291 1.512 - 0.798 - - - - 0.714 - - translocase of inner mitochondrial membrane 8 homolog B (yeast) [Source:ZFIN;Acc:ZDB-GENE-031019-1]
37. eef2k ENSDARG00000035835 2906 1.511 - 0.784 - - - - 0.727 - - eukaryotic elongation factor 2 kinase [Source:ZFIN;Acc:ZDB-GENE-020916-2]
38. TMPO TMPO 3264 1.504 - 0.760 - - - - 0.744 - -
39. cacng1 cacng1 3118 1.503 - 0.722 - - - - 0.781 - -
40. ehd1b ENSDARG00000014793, ENSDARG00000110243, ENSDARG00000110919 2496 1.502 - 0.790 - - - - 0.712 - - EH-domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2069]
41. tns1 tns1 5891 1.501 - 0.794 - - - - 0.707 - -
42. myf6 ENSDARG00000029830 1911 1.498 - 0.720 - - - - 0.778 - - myogenic factor 6 [Source:ZFIN;Acc:ZDB-GENE-040309-2]
43. ryr1b ENSDARG00000023797 5693 1.498 - 0.764 - - - - 0.734 - - ryanodine receptor 1b (skeletal) [Source:ZFIN;Acc:ZDB-GENE-070705-417]
44. txlnbb ENSDARG00000076241 6396 1.497 - 0.745 - - - - 0.752 - - taxilin beta b [Source:ZFIN;Acc:ZDB-GENE-070424-77]
45. arvcfb ENSDARG00000061688 2388 1.497 - 0.733 - - - - 0.764 - - ARVCF, delta catenin family member b [Source:ZFIN;Acc:ZDB-GENE-060526-60]
46. myoz2a ENSDARG00000012311 1373 1.492 - 0.743 - - - - 0.749 - - myozenin 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1880]
47. si:ch211-114n24.7 si:ch211-114n24.7 2544 1.49 - 0.735 - - - - 0.755 - -
48. mef2aa ENSDARG00000031756 2699 1.489 - 0.736 - - - - 0.753 - - myocyte enhancer factor 2aa [Source:ZFIN;Acc:ZDB-GENE-990415-163]
49. atp1a2a ENSDARG00000010472, ENSDARG00000111818, ENSDARG00000115733 6341 1.486 - 0.727 - - - - 0.759 - - ATPase Na+/K+ transporting subunit alpha 2 [Source:ZFIN;Acc:ZDB-GENE-001212-6]
50. BX294434.1 ENSDARG00000061272 6493 1.484 - 0.730 - - - - 0.754 - - solute carrier family 41 member 1 [Source:NCBI gene;Acc:564564]
51. tmem182 tmem182 12589 1.479 0.723 - - - - - 0.756 - -
52. hapln1a ENSDARG00000089769 12334 1.478 - 0.773 - - - - 0.705 - - hyaluronan and proteoglycan link protein 1a [Source:ZFIN;Acc:ZDB-GENE-050302-175]
53. usp5_1 ENSDARG00000014517, ENSDARG00000114598 5050 1.475 - 0.740 - - - - 0.735 - - ubiquitin specific peptidase 5 (isopeptidase T) [Source:ZFIN;Acc:ZDB-GENE-040426-2584]
54. COL22A1 COL22A1 4473 1.474 - 0.706 - - - - 0.768 - -
55. alpk2 ENSDARG00000079637 1483 1.473 - 0.752 - - - - 0.721 - - alpha-kinase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1868]
56. zcrb1 ENSDARG00000045691 1741 1.472 - - - - - 0.724 0.748 - - zinc finger CCHC-type and RNA binding motif 1 [Source:ZFIN;Acc:ZDB-GENE-041210-114]
57. EHBP1L1 EHBP1L1 2500 1.471 - 0.720 - - - - 0.751 - -
58. gbp ENSDARG00000040059 1939 1.47 - - - - - 0.766 - 0.704 - glycogen synthase kinase binding protein [Source:ZFIN;Acc:ZDB-GENE-990714-7]
59. tnnc1b ENSDARG00000037539 13945 1.467 - 0.731 - - - - 0.736 - - troponin C type 1b (slow) [Source:ZFIN;Acc:ZDB-GENE-040625-62]
60. nt5dc3 ENSDARG00000062949 816 1.467 - 0.738 - - - - 0.729 - - 5'-nucleotidase domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-080523-3]
61. ppp1r14c ENSDARG00000077341 1587 1.466 - 0.740 - - - - 0.726 - - protein phosphatase 1, regulatory (inhibitor) subunit 14C [Source:ZFIN;Acc:ZDB-GENE-050706-92]
62. spna2 28368 1.461 0.731 - - 0.730 - - - - - spectrin alpha 2, transcript variant X12
63. gypc ENSDARG00000041546 1487 1.46 - 0.758 - - - - 0.702 - - glycophorin C (Gerbich blood group) [Source:ZFIN;Acc:ZDB-GENE-030131-7930]
64. pmp22b ENSDARG00000060457 20406 1.46 0.720 - - - - - 0.740 - - peripheral myelin protein 22b [Source:ZFIN;Acc:ZDB-GENE-060421-4337]
65. rp42-pen rp42-pen 3395 1.458 - 0.755 - - - - 0.703 - -
66. srl ENSDARG00000104587 11126 1.455 - 0.736 - - - - 0.719 - - sarcalumenin [Source:ZFIN;Acc:ZDB-GENE-061110-91]
67. chrne ENSDARG00000034307, ENSDARG00000112263 1022 1.45 - 0.707 - - - - 0.743 - - cholinergic receptor, nicotinic, epsilon [Source:ZFIN;Acc:ZDB-GENE-040808-32]
68. PHB2 PHB2 3755 1.439 - 0.738 - - - - 0.701 - -
69. kcnj11 ENSDARG00000051880, ENSDARG00000114565 211 1.437 - 0.732 - - - - 0.705 - - potassium inwardly-rectifying channel, subfamily J, member 11 [Source:ZFIN;Acc:ZDB-GENE-060308-2]
70. suz12b ENSDARG00000098924, ENSDARG00000114239, ENSDARG00000114524 1947 1.434 - - - 0.721 - - - - 0.713 SUZ12, polycomb repressive complex 2 subunit b [Source:ZFIN;Acc:ZDB-GENE-030131-3255]
71. limch1a ENSDARG00000074275 2981 1.426 - 0.707 - - - - 0.719 - - LIM and calponin homology domains 1a [Source:ZFIN;Acc:ZDB-GENE-090312-153]
72. pygma ENSDARG00000055518 15972 1.421 - 0.709 - - - - 0.712 - - phosphorylase, glycogen, muscle A [Source:ZFIN;Acc:ZDB-GENE-050522-482]
73. gpc1b ENSDARG00000090585 1393 0.998 0.998 - - - - - - - - glypican 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1306]
74. crbn ENSDARG00000054250 673 0.997 0.997 - - - - - - - - cereblon [Source:ZFIN;Acc:ZDB-GENE-040822-43]
75. atg4b ENSDARG00000052104 758 0.997 0.997 - - - - - - - - autophagy related 4B, cysteine peptidase [Source:ZFIN;Acc:ZDB-GENE-040917-3]
76. RNF214 RNF214 816 0.997 0.997 - - - - - - - -
77. gapvd1 ENSDARG00000090183, ENSDARG00000113177 611 0.997 0.997 - - - - - - - - GTPase activating protein and VPS9 domains 1 [Source:ZFIN;Acc:ZDB-GENE-040718-117]
78. mocs2 ENSDARG00000077202, ENSDARG00000114592, ENSDARG00000114882 942 0.997 0.997 - - - - - - - - molybdenum cofactor synthesis 2 [Source:ZFIN;Acc:ZDB-GENE-110411-53]
79. slc22a2 ENSDARG00000030530 313 0.997 0.997 - - - - - - - - solute carrier family 22 (organic cation transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2167]
80. dnajc11 1939 0.997 0.997 - - - - - - - - DnaJ heat shock protein family (Hsp40) member C11
81. mnx1 ENSDARG00000035984, ENSDARG00000109419 1014 0.996 0.996 - - - - - - - - motor neuron and pancreas homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040409-1]
82. sh3gl3b ENSDARG00000007302 573 0.996 0.996 - - - - - - - - SH3-domain GRB2-like 3b [Source:ZFIN;Acc:ZDB-GENE-040121-4]
83. phf12a ENSDARG00000074303 1025 0.996 0.996 - - - - - - - - PHD finger protein 12a [Source:ZFIN;Acc:ZDB-GENE-030131-3876]
84. eef2a.1 ENSDARG00000042094 1781 0.996 0.996 - - - - - - - - eukaryotic translation elongation factor 2a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050522-500]
85. ep300b ENSDARG00000061108 5173 0.996 0.996 - - - - - - - - E1A binding protein p300 b [Source:ZFIN;Acc:ZDB-GENE-080403-15]
86. ryr1a ENSDARG00000011422 2377 0.996 0.996 - - - - - - - - ryanodine receptor 1a (skeletal) [Source:ZFIN;Acc:ZDB-GENE-020108-2]
87. fbxo45 ENSDARG00000071492, ENSDARG00000111553 732 0.996 0.996 - - - - - - - - F-box protein 45 [Source:ZFIN;Acc:ZDB-GENE-040426-1450]
88. nr2f1b ENSDARG00000017168 1487 0.996 0.996 - - - - - - - - nuclear receptor subfamily 2, group F, member 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1438]
89. mta3 ENSDARG00000054903, ENSDARG00000113436 353 0.996 0.996 - - - - - - - - metastasis associated 1 family, member 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6485]
90. bbs5 ENSDARG00000039827 211 0.996 0.996 - - - - - - - - Bardet-Biedl syndrome 5 [Source:ZFIN;Acc:ZDB-GENE-040426-1083]
91. SUSD4 ENSDARG00000026335 195 0.996 0.996 - - - - - - - - sushi domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-110511-1]
92. cep170a cep170a 652 0.996 0.996 - - - - - - - -
93. lyz ENSDARG00000057789, ENSDARG00000109290, ENSDARG00000114098 5991 0.996 0.996 - - - - - - - - lysozyme [Source:ZFIN;Acc:ZDB-GENE-020515-2]
94. daam2 ENSDARG00000028393 226 0.996 0.996 - - - - - - - - dishevelled associated activator of morphogenesis 2 [Source:ZFIN;Acc:ZDB-GENE-070709-1]
95. chst14 ENSDARG00000043011 345 0.996 0.996 - - - - - - - - carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14 [Source:ZFIN;Acc:ZDB-GENE-040401-3]
96. zyx ENSDARG00000075733 429 0.996 0.996 - - - - - - - - zyxin [Source:ZFIN;Acc:ZDB-GENE-070928-18]
97. ino80db ENSDARG00000062226 504 0.996 0.996 - - - - - - - - INO80 complex subunit Db [Source:ZFIN;Acc:ZDB-GENE-070112-2072]
98. rnf168 ENSDARG00000112483 594 0.996 0.996 - - - - - - - - ring finger protein 168 [Source:ZFIN;Acc:ZDB-GENE-030131-6013]
99. tmem194a tmem194a 745 0.996 0.996 - - - - - - - -
100. gbx1 ENSDARG00000071418 871 0.996 0.996 - - - - - - - - gastrulation brain homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-020117-2]

There are 951 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA