Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for vamp4

Gene Name Gene ID Reads Annotation
vamp4 ENSDARG00000043510 595 vesicle-associated membrane protein 4 [Source:ZFIN;Acc:ZDB-GENE-040625-92]










Genes with expression patterns similar to vamp4

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. vamp4 ENSDARG00000043510 595 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 vesicle-associated membrane protein 4 [Source:ZFIN;Acc:ZDB-GENE-040625-92]
2. plcd3a ENSDARG00000052957 467 1.593 - 0.736 - - - - - 0.857 - phospholipase C, delta 3a [Source:ZFIN;Acc:ZDB-GENE-070620-1]
3. rab3ip ENSDARG00000101908 556 1.58 - 0.850 - - - - - 0.730 - RAB3A interacting protein (rabin3) [Source:ZFIN;Acc:ZDB-GENE-050522-323]
4. SOWAHA SOWAHA 419 1.575 - 0.766 - - - - 0.809 - -
5. tnfaip8l3 ENSDARG00000088709 345 1.554 - 0.725 - - - - - 0.829 - tumor necrosis factor, alpha-induced protein 8-like 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1313]
6. dync2li1 ENSDARG00000039770, ENSDARG00000111924 133 1.535 - 0.725 - - - - - 0.810 - dynein, cytoplasmic 2, light intermediate chain 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1230]
7. muc13a ENSDARG00000069559 985 1.535 - 0.710 - - - - - 0.825 - mucin 13a, cell surface associated [Source:ZFIN;Acc:ZDB-GENE-061207-26]
8. pibf1 ENSDARG00000013006, ENSDARG00000015506 151 1.535 - 0.822 - - - - - 0.713 - progesterone immunomodulatory binding factor 1 [Source:ZFIN;Acc:ZDB-GENE-040801-94]
9. csde1 ENSDARG00000074758 172 1.532 - - - - - - 0.728 0.804 - cold shock domain containing E1, RNA-binding [Source:ZFIN;Acc:ZDB-GENE-030131-8623]
10. cyth3 cyth3 120 1.5 - 0.704 - - - - - 0.796 -
11. ccnl1a ENSDARG00000055124, ENSDARG00000116311 2174 1.498 - - - - - 0.761 - 0.737 - cyclin L1a [Source:ZFIN;Acc:ZDB-GENE-050419-206]
12. sb:cb252 sb:cb252 2480 1.493 - 0.700 - - - - - 0.793 -
13. paqr3b ENSDARG00000044253, ENSDARG00000110049 381 1.444 - - - - - - 0.731 0.713 - progestin and adipoQ receptor family member IIIb [Source:ZFIN;Acc:ZDB-GENE-050913-128]
14. brap ENSDARG00000008560 821 1.409 - 0.703 - - - - 0.706 - - BRCA1 associated protein [Source:ZFIN;Acc:ZDB-GENE-040718-168]
15. SUOX ENSDARG00000091574 122 0.924 - 0.924 - - - - - - - sulfite oxidase [Source:ZFIN;Acc:ZDB-GENE-070718-3]
16. TBC1D8B ENSDARG00000062192 1031 0.92 - 0.920 - - - - - - - TBC1 domain family member 8B [Source:HGNC Symbol;Acc:HGNC:24715]
17. MYO9B ENSDARG00000078313 97 0.912 - 0.912 - - - - - - - myosin IXB [Source:HGNC Symbol;Acc:HGNC:7609]
18. si:dkeyp-7b3.1 si:dkeyp-7b3.1 615 0.91 - - - - - - - 0.910 -
19. MYO5C ENSDARG00000104235 1285 0.906 - 0.906 - - - - - - - myosin VC [Source:ZFIN;Acc:ZDB-GENE-131127-196]
20. CU856207.1 CU856207.1 87 0.904 - - - - - - - 0.904 -
21. bet1l ENSDARG00000032037 1477 0.879 - - - - - - - 0.879 - Bet1 golgi vesicular membrane trafficking protein-like [Source:ZFIN;Acc:ZDB-GENE-040822-2]
22. arl15b ENSDARG00000057995, ENSDARG00000109775 1243 0.874 - - - - - - - 0.874 - ADP-ribosylation factor-like 15b [Source:ZFIN;Acc:ZDB-GENE-080813-2]
23. BX322601.2 BX322601.2 297 0.873 - 0.873 - - - - - - -
24. b3gnt5a ENSDARG00000018971 938 0.873 - 0.873 - - - - - - - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5a [Source:ZFIN;Acc:ZDB-GENE-030131-8470]
25. BX890577.1 BX890577.1 257 0.872 - 0.872 - - - - - - -
26. PLEKHA2 PLEKHA2 43 0.872 - 0.872 - - - - - - -
27. zgc:113265 318 0.867 - 0.867 - - - - - - - zgc:113265, transcript variant X3
28. efcab1 ENSDARG00000061377 234 0.867 - 0.867 - - - - - - - EF-hand calcium binding domain 1 [Source:ZFIN;Acc:ZDB-GENE-040914-40]
29. tspan11 ENSDARG00000001781 743 0.866 - - - - - - - 0.866 - tetraspanin 11 [Source:ZFIN;Acc:ZDB-GENE-041210-93]
30. arl13b ENSDARG00000012763 458 0.866 - 0.866 - - - - - - - ADP-ribosylation factor-like 13b [Source:ZFIN;Acc:ZDB-GENE-021217-3]
31. sntb1 ENSDARG00000041729 163 0.86 - 0.860 - - - - - - - syntrophin, basic 1 [Source:ZFIN;Acc:ZDB-GENE-040704-13]
32. tgm1l4 ENSDARG00000101407 800 0.858 - - - - - - - 0.858 - transglutaminase 1 like 4 [Source:ZFIN;Acc:ZDB-GENE-050913-29]
33. glb1l ENSDARG00000029955 736 0.855 - - - - - - - 0.855 - galactosidase, beta 1-like [Source:ZFIN;Acc:ZDB-GENE-050309-196]
34. fas ENSDARG00000043586 194 0.855 - - - - - - - 0.855 - Fas cell surface death receptor [Source:ZFIN;Acc:ZDB-GENE-061019-2]
35. RNF157 ENSDARG00000057481 215 0.855 - 0.855 - - - - - - - ring finger protein 157 [Source:HGNC Symbol;Acc:HGNC:29402]
36. si:ch211-212o1.2 ENSDARG00000011498, ENSDARG00000110768 378 0.855 - 0.855 - - - - - - - si:ch211-212o1.2 [Source:ZFIN;Acc:ZDB-GENE-041111-310]
37. si:ch211-208f21.2 ENSDARG00000094177 61 0.855 - 0.855 - - - - - - - si:ch211-208f21.2 [Source:ZFIN;Acc:ZDB-GENE-110914-134]
38. galnt13 ENSDARG00000099227 1059 0.854 - - - - - - - 0.854 - UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 [Source:ZFIN;Acc:ZDB-GENE-091204-444]
39. etv4 ENSDARG00000018303, ENSDARG00000115855 3889 0.854 - 0.854 - - - - - - - ets variant 4 [Source:ZFIN;Acc:ZDB-GENE-990415-71]
40. THSD1 ENSDARG00000075273, ENSDARG00000112294 228 0.853 - - - - - - - 0.853 - thrombospondin, type I, domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-100105-3]
41. ZDHHC20_1 ZDHHC20_1 440 0.852 - - - - - - - 0.852 -
42. ric8a ENSDARG00000007247 229 0.85 - - - - - - - 0.850 - RIC8 guanine nucleotide exchange factor A [Source:ZFIN;Acc:ZDB-GENE-040927-18]
43. rad54l2 ENSDARG00000063031 821 0.85 - - - - - - 0.850 - - RAD54 like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-3097]
44. BX548021.2_1 BX548021.2_1 164 0.849 - 0.849 - - - - - - -
45. hsd17b12b ENSDARG00000035872 631 0.847 - 0.847 - - - - - - - hydroxysteroid (17-beta) dehydrogenase 12b [Source:ZFIN;Acc:ZDB-GENE-030131-1346]
46. prkcea ENSDARG00000003008 1118 0.847 - - - - - - 0.847 - - protein kinase C, epsilon a [Source:ZFIN;Acc:ZDB-GENE-030131-8191]
47. si:dkey-229d2.7 ENSDARG00000092460 15 0.846 - 0.846 - - - - - - - si:dkey-229d2.7 [Source:ZFIN;Acc:ZDB-GENE-060526-265]
48. cox11 ENSDARG00000061004, ENSDARG00000115002 423 0.845 - - - - - - - 0.845 - cytochrome c oxidase assembly homolog 11 (yeast) [Source:ZFIN;Acc:ZDB-GENE-050506-82]
49. ppp1r14ab ENSDARG00000017710, ENSDARG00000110779 3296 0.845 - 0.845 - - - - - - - protein phosphatase 1, regulatory (inhibitor) subunit 14Ab [Source:ZFIN;Acc:ZDB-GENE-040426-1783]
50. zgc:165481 ENSDARG00000060092 95 0.844 - - - - - - - 0.844 - zgc:165481 [Source:ZFIN;Acc:ZDB-GENE-070615-21]
51. arhgef39 ENSDARG00000013476, ENSDARG00000114412 632 0.844 - - - - - - - 0.844 - Rho guanine nucleotide exchange factor (GEF) 39 [Source:ZFIN;Acc:ZDB-GENE-041114-28]
52. DHX36 ENSDARG00000101059 314 0.844 - - - - - - - 0.844 - DEAH (Asp-Glu-Ala-His) box polypeptide 36 [Source:ZFIN;Acc:ZDB-GENE-050419-20]
53. ft1 ENSDARG00000059056 102 0.843 - - - - - - - 0.843 - alpha(1,3)fucosyltransferase gene 1 [Source:ZFIN;Acc:ZDB-GENE-990715-17]
54. PRKDC ENSDARG00000075083 693 0.843 - 0.843 - - - - - - - protein kinase, DNA-activated, catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-030131-9008]
55. pcdh1b ENSDARG00000036175 101 0.843 - - - - - - - 0.843 - protocadherin 1b [Source:ZFIN;Acc:ZDB-GENE-091015-2]
56. dynll2b ENSDARG00000005172 935 0.84 - - - - - - - 0.840 - dynein, light chain, LC8-type 2b [Source:ZFIN;Acc:ZDB-GENE-050320-132]
57. wdr78 ENSDARG00000044400, ENSDARG00000109570 48 0.84 - - - - - - - 0.840 - WD repeat domain 78 [Source:ZFIN;Acc:ZDB-GENE-050522-322]
58. ptprdb ENSDARG00000019945 48 0.84 - - - - - - - 0.840 - protein tyrosine phosphatase, receptor type, D, b [Source:ZFIN;Acc:ZDB-GENE-070615-38]
59. calr ENSDARG00000076290 13987 0.84 - - - - - - - 0.840 - calreticulin [Source:ZFIN;Acc:ZDB-GENE-030131-4042]
60. aldh3a2a ENSDARG00000028259 591 0.84 - - - - - - - 0.840 - aldehyde dehydrogenase 3 family, member A2a [Source:ZFIN;Acc:ZDB-GENE-040718-74]
61. si:ch211-134c9.2 ENSDARG00000095593 86 0.838 - - - - - - - 0.838 - si:ch211-134c9.2 [Source:ZFIN;Acc:ZDB-GENE-090312-73]
62. CR376785.2 CR376785.2 175 0.838 - - - - - - - 0.838 -
63. pdcd2 ENSDARG00000007892 223 0.837 - - - - - - - 0.837 - programmed cell death 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1236]
64. ago4 ENSDARG00000100854 496 0.836 - 0.836 - - - - - - - argonaute RISC catalytic component 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5357]
65. ubox5 ENSDARG00000058563 161 0.836 - 0.836 - - - - - - - U-box domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-110411-166]
66. col7a1l ENSDARG00000069692 44 0.836 - 0.836 - - - - - - - collagen type VII alpha 1-like [Source:ZFIN;Acc:ZDB-GENE-030131-9861]
67. cnep1r1 ENSDARG00000036064 1440 0.835 - - - - - - - 0.835 - CTD nuclear envelope phosphatase 1 regulatory subunit 1 [Source:ZFIN;Acc:ZDB-GENE-050417-425]
68. gucy1a3 89 0.835 - 0.835 - - - - - - - guanylate cyclase 1, soluble, alpha 3
69. CABZ01063556.1 ENSDARG00000116344 319 0.835 - - - - - - - 0.835 - L antigen family member 3 [Source:NCBI gene;Acc:100536597]
70. C21HXorf40A C21HXorf40A 216 0.835 - - - - - - - 0.835 -
71. alox5 alox5 406 0.834 - - - - - - - 0.834 -
72. si:dkey-52l6.2 si:dkey-52l6.2 384 0.834 - - - - - - - 0.834 -
73. rlbp1b ENSDARG00000045808, ENSDARG00000109856 282 0.834 - - - - - - - 0.834 - retinaldehyde binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1870]
74. LRIF1_1 LRIF1_1 228 0.834 - - - - - - - 0.834 -
75. ids ENSDARG00000071699 265 0.833 - - - - - - - 0.833 - iduronate 2-sulfatase [Source:ZFIN;Acc:ZDB-GENE-061215-37]
76. rcv1 rcv1 77 0.832 - - - - - - - 0.832 -
77. STARD4 ENSDARG00000102477 411 0.832 - - - - - - - 0.832 - StAR-related lipid transfer (START) domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-050417-168]
78. cox4i2 ENSDARG00000022509 362 0.832 - - - - - - - 0.832 - cytochrome c oxidase subunit 4I2 [Source:ZFIN;Acc:ZDB-GENE-040426-1775]
79. arr3a ENSDARG00000056511, ENSDARG00000114648 192 0.832 - - - - - - - 0.832 - arrestin 3a, retinal (X-arrestin) [Source:ZFIN;Acc:ZDB-GENE-040718-102]
80. TMEM208 ENSDARG00000068291 643 0.832 - - - - - - - 0.832 - transmembrane protein 208 [Source:HGNC Symbol;Acc:HGNC:25015]
81. adar ENSDARG00000012389 520 0.832 - - - - - - - 0.832 - adenosine deaminase, RNA-specific [Source:ZFIN;Acc:ZDB-GENE-000616-5]
82. si:ch211-117n7.8 si:ch211-117n7.8 83 0.832 - - - - - - - 0.832 -
83. gngt2a ENSDARG00000010680, ENSDARG00000110351 337 0.832 - - - - - - - 0.832 - guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2a [Source:ZFIN;Acc:ZDB-GENE-030131-7595]
84. si:dkey-240h12.4 ENSDARG00000034210 114 0.831 - - - - - - - 0.831 - si:dkey-240h12.4 [Source:ZFIN;Acc:ZDB-GENE-070705-406]
85. zgc:66014 817 0.831 - 0.831 - - - - - - - zgc:66014, transcript variant X6
86. CCAR2 ENSDARG00000038302 363 0.831 - - - - - - - 0.831 - cell cycle and apoptosis regulator 2 [Source:ZFIN;Acc:ZDB-GENE-091204-207]
87. mcu ENSDARG00000101175 1287 0.831 - 0.831 - - - - - - - mitochondrial calcium uniporter [Source:ZFIN;Acc:ZDB-GENE-061013-24]
88. pih1d1 ENSDARG00000037955 301 0.831 - 0.831 - - - - - - - PIH1 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050309-147]
89. rft1 ENSDARG00000060398 146 0.831 - 0.831 - - - - - - - RFT1 homolog [Source:ZFIN;Acc:ZDB-GENE-110411-126]
90. PEG3 PEG3 644 0.831 - - - - - - - 0.831 -
91. ZC3H11A ENSDARG00000009754 281 0.831 - 0.831 - - - - - - - zinc finger CCCH-type containing 11A [Source:ZFIN;Acc:ZDB-GENE-030131-3272]
92. polr3c ENSDARG00000057562 123 0.831 - - - - - - - 0.831 - polymerase (RNA) III (DNA directed) polypeptide C [Source:ZFIN;Acc:ZDB-GENE-040426-992]
93. CU074314.1 CU074314.1 354 0.831 - - - - - - - 0.831 -
94. slc6a2 ENSDARG00000016141 49 0.831 - - - - - - - 0.831 - solute carrier family 6 (neurotransmitter transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-110408-4]
95. zgc:153738 ENSDARG00000069230 84 0.831 - 0.831 - - - - - - - zgc:153738 [Source:ZFIN;Acc:ZDB-GENE-061013-622]
96. nrgna ENSDARG00000039626 50 0.831 - - - - - - - 0.831 - neurogranin (protein kinase C substrate, RC3) a [Source:ZFIN;Acc:ZDB-GENE-090710-4]
97. pth2r ENSDARG00000006678, ENSDARG00000112414 46 0.831 - - - - - - - 0.831 - parathyroid hormone 2 receptor [Source:ZFIN;Acc:ZDB-GENE-991123-10]
98. RGS9BP ENSDARG00000086756 65 0.831 - - - - - - - 0.831 - regulator of G protein signaling 9 binding protein [Source:HGNC Symbol;Acc:HGNC:30304]
99. CYSTM1 CYSTM1 176 0.831 - - - - - - - 0.831 -
100. zdhhc16b ENSDARG00000015989 193 0.83 - 0.830 - - - - - - - zinc finger, DHHC-type containing 16b [Source:ZFIN;Acc:ZDB-GENE-040426-1301]

There are 576 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA