Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for usp5_1

Gene Name Gene ID Reads Annotation
usp5_1 ENSDARG00000014517, ENSDARG00000114598 5050 ubiquitin specific peptidase 5 (isopeptidase T) [Source:ZFIN;Acc:ZDB-GENE-040426-2584]










Genes with expression patterns similar to usp5_1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. usp5_1 ENSDARG00000014517, ENSDARG00000114598 5050 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ubiquitin specific peptidase 5 (isopeptidase T) [Source:ZFIN;Acc:ZDB-GENE-040426-2584]
2. MYOT ENSDARG00000076312 1791 5.747 0.848 0.875 0.761 - 0.714 0.876 0.900 0.773 - myotilin [Source:ZFIN;Acc:ZDB-GENE-110411-129]
3. txlnbb ENSDARG00000076241 6396 5.397 0.914 0.969 0.871 - 0.777 0.932 0.934 - - taxilin beta b [Source:ZFIN;Acc:ZDB-GENE-070424-77]
4. alpk3a ENSDARG00000078989 1992 5.228 0.899 0.940 - - 0.720 0.869 0.872 - 0.928 alpha-kinase 3a [Source:ZFIN;Acc:ZDB-GENE-050419-48]
5. PTPLA PTPLA 4044 5.197 0.836 0.923 0.789 0.850 - 0.866 0.933 - -
6. nexn ENSDARG00000057317 10972 5.14 0.938 - 0.870 0.762 0.751 0.898 0.921 - - nexilin (F actin binding protein) [Source:ZFIN;Acc:ZDB-GENE-041114-92]
7. klhl41b ENSDARG00000006757 10762 5.023 0.893 - 0.844 0.745 0.785 0.816 0.940 - - kelch-like family member 41b [Source:ZFIN;Acc:ZDB-GENE-030131-9875]
8. tnnc1b ENSDARG00000037539 13945 5.023 - 0.939 0.755 0.815 0.776 0.888 0.850 - - troponin C type 1b (slow) [Source:ZFIN;Acc:ZDB-GENE-040625-62]
9. ntmt1 ENSDARG00000022399 5779 4.973 0.897 0.940 - 0.739 0.756 0.770 0.871 - - N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2055]
10. chrna1 ENSDARG00000009021 2931 4.961 0.851 0.910 0.744 0.726 - 0.811 0.919 - - cholinergic receptor, nicotinic, alpha 1 (muscle) [Source:ZFIN;Acc:ZDB-GENE-980526-137]
11. MYOM3 2720 4.642 0.743 0.849 0.728 - - 0.753 0.865 - 0.704 myomesin 3, transcript variant X2
12. tnnt3a ENSDARG00000030270 112506 4.591 0.888 - 0.715 0.724 0.703 0.796 0.765 - - troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
13. ryr3 ENSDARG00000071331 6795 4.409 0.922 0.895 - - 0.712 0.941 0.939 - - ryanodine receptor 3 [Source:ZFIN;Acc:ZDB-GENE-041001-165]
14. klhl40a ENSDARG00000039052 2537 4.35 0.920 0.911 0.718 - - 0.865 0.936 - - kelch-like family member 40a [Source:ZFIN;Acc:ZDB-GENE-050916-1]
15. atp1a2a ENSDARG00000010472, ENSDARG00000111818, ENSDARG00000115733 6341 4.35 0.913 0.917 0.800 0.798 - - 0.922 - - ATPase Na+/K+ transporting subunit alpha 2 [Source:ZFIN;Acc:ZDB-GENE-001212-6]
16. cacng1 cacng1 3118 4.348 0.935 0.948 - - 0.744 0.840 0.881 - -
17. sptb ENSDARG00000030490 7128 4.283 0.851 0.908 0.734 - - 0.878 0.912 - - spectrin, beta, erythrocytic [Source:ZFIN;Acc:ZDB-GENE-000906-1]
18. fitm1 ENSDARG00000056464 1759 4.262 0.821 0.877 0.765 - - 0.871 0.928 - - fat storage-inducing transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-050306-28]
19. fxr2 ENSDARG00000016260, ENSDARG00000116730 10030 4.259 0.920 - - 0.763 0.789 0.867 0.920 - - fragile X mental retardation, autosomal homolog 2 [Source:ZFIN;Acc:ZDB-GENE-040426-943]
20. zgc:92518 ENSDARG00000016343 3837 4.176 0.906 - - 0.711 0.793 0.833 0.933 - - zgc:92518 [Source:ZFIN;Acc:ZDB-GENE-040718-53]
21. limch1a ENSDARG00000074275 2981 4.159 0.830 0.893 0.704 - - 0.830 0.902 - - LIM and calponin homology domains 1a [Source:ZFIN;Acc:ZDB-GENE-090312-153]
22. srl ENSDARG00000104587 11126 4.151 0.864 0.953 0.716 0.713 - - 0.905 - - sarcalumenin [Source:ZFIN;Acc:ZDB-GENE-061110-91]
23. trim55a ENSDARG00000029596 2858 4.112 0.798 0.929 0.761 - - 0.741 0.883 - - tripartite motif containing 55a [Source:ZFIN;Acc:ZDB-GENE-040718-50]
24. cfl2 ENSDARG00000014106 8051 4.109 0.860 0.947 0.734 0.718 - - 0.850 - - cofilin 2 (muscle) [Source:ZFIN;Acc:ZDB-GENE-040426-1815]
25. ppapdc3 ppapdc3 4924 4.078 0.834 - 0.760 0.722 - 0.844 0.918 - -
26. asb5b ENSDARG00000053222 1207 4.069 0.821 0.918 - - - 0.810 0.805 0.715 - ankyrin repeat and SOCS box containing 5b [Source:ZFIN;Acc:ZDB-GENE-050417-271]
27. hsp90aa1.1 ENSDARG00000010478 47784 3.98 0.763 - - 0.734 0.761 0.809 0.913 - - heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
28. arvcfb ENSDARG00000061688 2388 3.925 0.767 0.781 - - - 0.745 0.854 - 0.778 ARVCF, delta catenin family member b [Source:ZFIN;Acc:ZDB-GENE-060526-60]
29. chrne ENSDARG00000034307, ENSDARG00000112263 1022 3.917 0.742 0.790 - 0.723 - 0.851 0.811 - - cholinergic receptor, nicotinic, epsilon [Source:ZFIN;Acc:ZDB-GENE-040808-32]
30. obsl1a ENSDARG00000003684 1288 3.89 0.827 0.768 0.701 - - 0.796 0.798 - - obscurin-like 1a [Source:ZFIN;Acc:ZDB-GENE-060503-649]
31. svila ENSDARG00000055075, ENSDARG00000110002, ENSDARG00000114888 4078 3.886 0.927 - 0.705 - - 0.758 0.766 - 0.730 supervillin a [Source:ZFIN;Acc:ZDB-GENE-990706-5]
32. myoz2b ENSDARG00000037266 2139 3.881 0.717 0.838 0.715 - - 0.759 0.852 - - myozenin 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1853]
33. trdn ENSDARG00000041779 4283 3.622 0.897 0.917 - - - 0.880 0.928 - - triadin [Source:ZFIN;Acc:ZDB-GENE-041014-193]
34. sh3bgr ENSDARG00000021633 3498 3.565 0.826 0.960 - - - 0.859 0.920 - - SH3 domain binding glutamate-rich protein [Source:ZFIN;Acc:ZDB-GENE-040801-27]
35. hhatla ENSDARG00000039051 6598 3.537 0.909 0.925 0.780 - - - 0.923 - - hedgehog acyltransferase like, a [Source:ZFIN;Acc:ZDB-GENE-040426-1865]
36. smyd2b ENSDARG00000005629 8181 3.53 0.908 0.934 0.793 - - 0.895 - - - SET and MYND domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-041001-201]
37. gypc ENSDARG00000041546 1487 3.483 0.892 0.933 - - - 0.769 0.889 - - glycophorin C (Gerbich blood group) [Source:ZFIN;Acc:ZDB-GENE-030131-7930]
38. AIMP1 ENSDARG00000060036 4136 3.482 0.846 0.929 0.855 - - 0.852 - - - aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 [Source:ZFIN;Acc:ZDB-GENE-060825-144]
39. ITGB1BP2 ENSDARG00000030176 2472 3.479 0.869 0.932 - - 0.782 - 0.896 - - integrin subunit beta 1 binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6154]
40. TRIM63 TRIM63 1600 3.478 0.841 0.851 - - - 0.846 0.940 - -
41. zgc:158296 ENSDARG00000070923 3935 3.475 - 0.933 0.740 - - 0.894 0.908 - - zgc:158296 [Source:ZFIN;Acc:ZDB-GENE-070112-1272]
42. EHBP1L1 EHBP1L1 2500 3.461 0.892 0.868 - - - 0.768 0.933 - -
43. eya1 ENSDARG00000014259, ENSDARG00000116267 5111 3.458 0.871 0.870 - - - 0.894 0.823 - - EYA transcriptional coactivator and phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-990712-18]
44. myod1 ENSDARG00000030110 6019 3.457 0.839 0.877 - - - 0.794 0.947 - - myogenic differentiation 1 [Source:ZFIN;Acc:ZDB-GENE-980526-561]
45. stac3 ENSDARG00000098883 1765 3.454 0.829 0.934 - - - 0.846 0.845 - - SH3 and cysteine rich domain 3 [Source:ZFIN;Acc:ZDB-GENE-040801-248]
46. NRAP ENSDARG00000009341 3565 3.447 0.845 0.849 - - - 0.830 0.923 - - nebulin-related anchoring protein [Source:ZFIN;Acc:ZDB-GENE-060616-224]
47. znf648 ENSDARG00000104823 1918 3.436 0.828 0.886 - - - 0.878 0.844 - - zinc finger protein 648 [Source:ZFIN;Acc:ZDB-GENE-120215-149]
48. rp42-pen rp42-pen 3395 3.434 - 0.928 - - 0.704 0.915 0.887 - -
49. xirp2a ENSDARG00000071113 7113 3.431 0.886 0.907 - - - 0.744 0.894 - - xin actin binding repeat containing 2a [Source:ZFIN;Acc:ZDB-GENE-040108-7]
50. tmem182 tmem182 12589 3.429 - - 0.786 0.847 - 0.867 0.929 - -
51. chrnd ENSDARG00000019342 2728 3.425 0.778 0.935 0.798 - - - 0.914 - - cholinergic receptor, nicotinic, delta (muscle) [Source:ZFIN;Acc:ZDB-GENE-030131-6665]
52. smtnl1 ENSDARG00000041257 7410 3.424 0.867 - - 0.806 - 0.837 0.914 - - smoothelin-like 1 [Source:ZFIN;Acc:ZDB-GENE-050306-23]
53. pbxip1a ENSDARG00000071015 4960 3.42 0.804 0.946 0.733 - - - 0.937 - - pre-B-cell leukemia homeobox interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-060503-871]
54. DNAJA4 ENSDARG00000051762 5657 3.419 - 0.901 0.717 - - 0.889 0.912 - - DnaJ heat shock protein family (Hsp40) member A4 [Source:HGNC Symbol;Acc:HGNC:14885]
55. CU638714.1 ENSDARG00000100303 2132 3.417 0.797 0.926 - - - - 0.860 0.834 -
56. jph1a ENSDARG00000058603 2852 3.396 - 0.931 0.708 - - 0.838 0.919 - - junctophilin 1a [Source:ZFIN;Acc:ZDB-GENE-040724-233]
57. rtn2a ENSDARG00000016088 12184 3.394 0.954 - - 0.748 0.761 - 0.931 - - reticulon 2a [Source:ZFIN;Acc:ZDB-GENE-060420-1]
58. myhc4 ENSDARG00000035438 1322 3.392 0.753 0.923 - - - 0.827 0.889 - - myosin heavy chain 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6206]
59. kcnma1a ENSDARG00000079840 2584 3.388 0.849 0.853 - - - 0.804 0.882 - - potassium large conductance calcium-activated channel, subfamily M, alpha member 1a [Source:ZFIN;Acc:ZDB-GENE-070202-9]
60. mdh1b ENSDARG00000018008 3196 3.384 0.882 - 0.768 - - 0.810 0.924 - - malate dehydrogenase 1B, NAD (soluble) [Source:ZFIN;Acc:ZDB-GENE-060929-384]
61. C13H10orf71 3489 3.381 0.850 0.924 0.732 - - - 0.875 - - chromosome 13 C10orf71 homolog
62. si:ch211-114n24.7 si:ch211-114n24.7 2544 3.373 0.886 0.902 0.702 - - - 0.883 - -
63. TENC1 TENC1 1729 3.373 0.891 0.910 - - - 0.762 0.810 - -
64. cap2 ENSDARG00000104478 3266 3.369 0.851 0.792 - - - 0.810 0.916 - - CAP, adenylate cyclase-associated protein, 2 (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-1758]
65. fxr1 ENSDARG00000022968 2831 3.363 0.905 - - 0.732 - 0.841 0.885 - - fragile X mental retardation, autosomal homolog 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5431]
66. adss ENSDARG00000002071 5497 3.361 0.904 - 0.773 - 0.752 - 0.932 - - adenylosuccinate synthase [Source:ZFIN;Acc:ZDB-GENE-050417-337]
67. cspg4 ENSDARG00000078227 1084 3.353 - 0.871 - - - 0.862 0.755 - 0.865 chondroitin sulfate proteoglycan 4 [Source:ZFIN;Acc:ZDB-GENE-050519-1]
68. si:ch211-156j16.1 ENSDARG00000092035 7441 3.351 0.881 - 0.753 - 0.799 - 0.918 - - si:ch211-156j16.1 [Source:ZFIN;Acc:ZDB-GENE-030131-4106]
69. obsl1b ENSDARG00000077388 2511 3.347 0.868 0.897 - - - 0.721 0.861 - - obscurin-like 1b [Source:ZFIN;Acc:ZDB-GENE-050809-29]
70. myoz2a ENSDARG00000012311 1373 3.341 0.779 0.840 - - - 0.835 0.887 - - myozenin 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1880]
71. synpo2lb ENSDARG00000078696 2361 3.34 0.888 0.761 - - - 0.736 0.955 - - synaptopodin 2-like b [Source:ZFIN;Acc:ZDB-GENE-090828-5]
72. alpk2 ENSDARG00000079637 1483 3.338 0.834 0.786 - - - 0.847 0.871 - - alpha-kinase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1868]
73. PTP4A3 ENSDARG00000039997 3814 3.334 0.872 0.789 - - - 0.826 0.847 - - protein tyrosine phosphatase type IVA, member 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2220]
74. mef2aa ENSDARG00000031756 2699 3.324 - 0.907 - - 0.707 0.859 0.851 - - myocyte enhancer factor 2aa [Source:ZFIN;Acc:ZDB-GENE-990415-163]
75. txlnba ENSDARG00000020594 9385 3.323 - - 0.895 0.737 0.740 - 0.951 - - taxilin beta a [Source:ZFIN;Acc:ZDB-GENE-030131-322]
76. tgm2a ENSDARG00000070157 4516 3.316 0.918 - 0.772 - - 0.737 0.889 - - transglutaminase 2, C polypeptide A [Source:ZFIN;Acc:ZDB-GENE-040912-78]
77. ldb3a ENSDARG00000056322, ENSDARG00000116388 2569 3.305 0.816 0.811 - - - 0.790 0.888 - - LIM domain binding 3a [Source:ZFIN;Acc:ZDB-GENE-040121-6]
78. CU633479.5 ENSDARG00000114818 1815 3.302 0.769 0.873 - - - 0.785 0.875 - -
79. rbfox1l ENSDARG00000021184, ENSDARG00000111700 26249 3.3 0.797 - 0.867 - 0.703 - 0.933 - - RNA binding fox-1 homolog 1, like [Source:ZFIN;Acc:ZDB-GENE-040923-2]
80. MUSTN1 MUSTN1 1882 3.296 0.781 0.823 - - - 0.849 0.843 - -
81. sox6 ENSDARG00000015536 7728 3.295 0.868 - - - 0.712 0.827 0.888 - - SRY (sex determining region Y)-box 6 [Source:ZFIN;Acc:ZDB-GENE-081120-6]
82. CR847973.1 ENSDARG00000115516 8754 3.294 0.799 0.848 - - - 0.766 0.881 - -
83. trim63 trim63 2437 3.281 0.785 - 0.790 - - 0.779 0.927 - -
84. myhz2 ENSDARG00000012944 69921 3.281 0.905 - 0.777 - 0.711 - 0.888 - - myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
85. MYOM1 MYOM1 3870 3.278 0.849 0.799 0.727 - - - 0.903 - -
86. si:ch211-242b18.1 ENSDARG00000054723 2929 3.273 0.747 0.883 - - - 0.836 0.807 - - si:ch211-242b18.1 [Source:ZFIN;Acc:ZDB-GENE-030131-1518]
87. ahsa1 ahsa1 2012 3.272 0.732 - 0.827 - - 0.774 0.939 - -
88. enah ENSDARG00000032049 1526 3.27 0.703 0.865 - - - 0.786 0.916 - - enabled homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010323-11]
89. CR392006.1 CR392006.1 1401 3.267 0.707 0.926 - - - 0.829 0.805 - -
90. vwde ENSDARG00000103443 5758 3.262 0.771 0.930 - - - 0.738 0.823 - - von Willebrand factor D and EGF domains [Source:ZFIN;Acc:ZDB-GENE-060929-1226]
91. klhl21 ENSDARG00000039255 2550 3.261 0.744 0.875 - - - 0.799 0.843 - - kelch-like family member 21 [Source:ZFIN;Acc:ZDB-GENE-040426-2627]
92. tmem161a ENSDARG00000012790 16094 3.26 0.936 - 0.824 0.780 0.720 - - - - transmembrane protein 161A [Source:ZFIN;Acc:ZDB-GENE-041111-267]
93. mir133b_1 671 3.257 0.937 0.844 - - - 0.713 0.763 - - microRNA 133b
94. rapsn ENSDARG00000041133, ENSDARG00000111358 1416 3.247 0.862 0.753 - - - 0.723 0.909 - - receptor-associated protein of the synapse, 43kD [Source:ZFIN;Acc:ZDB-GENE-030313-1]
95. tpma ENSDARG00000033683 752432 3.241 0.908 - 0.828 0.722 - - 0.783 - - alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
96. txnipb ENSDARG00000070000 2365 3.239 0.793 0.750 - - - 0.872 0.824 - - thioredoxin interacting protein b [Source:ZFIN;Acc:ZDB-GENE-040917-1]
97. slc43a1b ENSDARG00000037748 1406 3.236 - 0.892 - - - 0.770 0.833 0.741 - solute carrier family 43 (amino acid system L transporter), member 1b [Source:ZFIN;Acc:ZDB-GENE-070209-173]
98. tnnt2d ENSDARG00000002988 7590 3.234 0.848 0.778 - - - 0.757 0.851 - - troponin T2d, cardiac [Source:ZFIN;Acc:ZDB-GENE-050626-97]
99. ttnb ttnb 73721 3.188 0.737 - 0.748 - 0.790 0.913 - - -
100. mef2ca ENSDARG00000029764 18547 3.184 0.815 0.861 0.749 - 0.759 - - - - myocyte enhancer factor 2ca [Source:ZFIN;Acc:ZDB-GENE-980526-253]

There are 2135 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA