Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for usp5

Gene Name Gene ID Reads Annotation
usp5 ENSDARG00000014517, ENSDARG00000114598 1969 ubiquitin specific peptidase 5 (isopeptidase T) [Source:ZFIN;Acc:ZDB-GENE-040426-2584]










Genes with expression patterns similar to usp5

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. usp5 ENSDARG00000014517, ENSDARG00000114598 1969 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ubiquitin specific peptidase 5 (isopeptidase T) [Source:ZFIN;Acc:ZDB-GENE-040426-2584]
2. vdac1 ENSDARG00000045132 8051 1.737 - 0.939 - - - 0.798 - - - voltage-dependent anion channel 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6514]
3. hmmr ENSDARG00000021794, ENSDARG00000111088 2009 1.68 - 0.943 - - - 0.737 - - - hyaluronan-mediated motility receptor (RHAMM) [Source:ZFIN;Acc:ZDB-GENE-030131-731]
4. ncapd3 ENSDARG00000034773, ENSDARG00000111405 823 1.671 - 0.953 - - - - 0.718 - - non-SMC condensin II complex, subunit D3 [Source:ZFIN;Acc:ZDB-GENE-040426-737]
5. gtf2h5 ENSDARG00000056099, ENSDARG00000114297 1331 1.668 - 0.945 - - - 0.723 - - - general transcription factor IIH, polypeptide 5 [Source:ZFIN;Acc:ZDB-GENE-041001-144]
6. ube2d1a ENSDARG00000029107, ENSDARG00000111656 3658 1.657 - 0.872 - - - - - 0.785 - ubiquitin-conjugating enzyme E2D 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1609]
7. ilf3a ENSDARG00000058660, ENSDARG00000116860 3760 1.654 - 0.900 - - - - 0.754 - - interleukin enhancer binding factor 3a [Source:ZFIN;Acc:ZDB-GENE-030131-3151]
8. CHMP4B CHMP4B 1387 1.605 - 0.820 - - - - 0.785 - -
9. amer1 ENSDARG00000079624, ENSDARG00000117033 1370 1.6 - 0.894 - - - - - 0.706 - APC membrane recruitment protein 1 [Source:ZFIN;Acc:ZDB-GENE-070719-2]
10. usp1 ENSDARG00000056414 1816 1.588 - 0.885 - - - - 0.703 - - ubiquitin specific peptidase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-726]
11. MKI67 ENSDARG00000091150 11038 1.559 - - - - - 0.739 0.820 - - marker of proliferation Ki-67 [Source:ZFIN;Acc:ZDB-GENE-030131-9771]
12. bub1bb ENSDARG00000074927 1667 1.549 - 0.810 - - - - - - 0.739 BUB1 mitotic checkpoint serine/threonine kinase Bb [Source:ZFIN;Acc:ZDB-GENE-030829-51]
13. praf2 ENSDARG00000032535 1400 1.549 - 0.846 - - - 0.703 - - - PRA1 domain family, member 2 [Source:ZFIN;Acc:ZDB-GENE-050417-190]
14. ssb ENSDARG00000029252 3394 1.544 - - - - - - 0.727 0.817 - Sjogren syndrome antigen B (autoantigen La) [Source:ZFIN;Acc:ZDB-GENE-030131-223]
15. zdhhc17 ENSDARG00000070441 1073 1.537 - 0.805 - - - - 0.732 - - zinc finger, DHHC-type containing 17 [Source:ZFIN;Acc:ZDB-GENE-070424-194]
16. srrt ENSDARG00000017762, ENSDARG00000114824 2158 1.528 - 0.724 - - - 0.804 - - - serrate RNA effector molecule homolog (Arabidopsis) [Source:ZFIN;Acc:ZDB-GENE-020419-13]
17. prmt1 ENSDARG00000010246 11311 1.516 - - - - - 0.801 - 0.715 - protein arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-693]
18. eprs ENSDARG00000060494 4729 1.516 - 0.748 - - - - - 0.768 - glutamyl-prolyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-638]
19. zgc:162944 ENSDARG00000069846, ENSDARG00000112524 3898 1.511 - 0.745 - - - - 0.766 - - zgc:162944 [Source:ZFIN;Acc:ZDB-GENE-070424-75]
20. sumo3b ENSDARG00000035993 3414 1.503 - 0.774 - - - - 0.729 - - small ubiquitin-like modifier 3b [Source:ZFIN;Acc:ZDB-GENE-040718-426]
21. si:ch211-69g19.2 ENSDARG00000070656, ENSDARG00000110191, ENSDARG00000114528 2860 1.499 - 0.794 0.705 - - - - - - si:ch211-69g19.2 [Source:ZFIN;Acc:ZDB-GENE-030804-13]
22. dnmt3b dnmt3b 2522 1.495 - 0.778 - - - - 0.717 - -
23. znf292b ENSDARG00000043973 3791 1.493 - 0.782 - - - - 0.711 - - zinc finger protein 292b [Source:ZFIN;Acc:ZDB-GENE-030131-9559]
24. khsrp ENSDARG00000026489 15738 1.487 - - - - - 0.702 0.785 - - KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
25. serinc1 ENSDARG00000009106 10571 1.477 - 0.724 - - - - 0.753 - - serine incorporator 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4415]
26. setb ENSDARG00000003920 21788 1.472 - - - - - 0.742 0.730 - - SET nuclear proto-oncogene b [Source:ZFIN;Acc:ZDB-GENE-030131-433]
27. atf7ip ENSDARG00000069619 5495 1.469 - - - - - - 0.767 0.702 - activating transcription factor 7 interacting protein [Source:ZFIN;Acc:ZDB-GENE-061103-178]
28. tpx2 ENSDARG00000078654 8120 1.467 - 0.745 - - - - 0.722 - - TPX2, microtubule-associated, homolog (Xenopus laevis) [Source:ZFIN;Acc:ZDB-GENE-030131-9652]
29. lix1l ENSDARG00000063244 2061 1.458 - - - - - 0.757 0.701 - - limb and CNS expressed 1 like [Source:ZFIN;Acc:ZDB-GENE-060503-777]
30. dpf2l ENSDARG00000037291, ENSDARG00000112198 2353 1.457 - - - - - - 0.720 - 0.737 D4, zinc and double PHD fingers family 2, like [Source:ZFIN;Acc:ZDB-GENE-030131-5132]
31. tead1a ENSDARG00000028159 3574 1.456 - - - - - 0.741 0.715 - - TEA domain family member 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2101]
32. ilf3b ENSDARG00000105177 9473 1.452 - - - - - 0.722 0.730 - - interleukin enhancer binding factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-587]
33. cldn5a ENSDARG00000043716 3865 1.451 - - - - - - - 0.700 0.751 claudin 5a [Source:ZFIN;Acc:ZDB-GENE-040426-2442]
34. setbp1 ENSDARG00000093799 4499 1.446 - - - - - 0.714 - - 0.732 SET binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-060526-72]
35. tmem2 2572 1.444 - - - - - - 0.730 0.714 - transmembrane protein 2, transcript variant X1
36. CCDC71 CCDC71 2442 1.443 - - 0.709 - - - 0.734 - -
37. zmiz1a ENSDARG00000074502 3920 1.439 - - - - - 0.719 0.720 - - zinc finger, MIZ-type containing 1a [Source:ZFIN;Acc:ZDB-GENE-080220-27]
38. MZT1 ENSDARG00000096668 2514 1.436 - - - 0.702 - 0.734 - - - mitotic spindle organizing protein 1 [Source:HGNC Symbol;Acc:HGNC:33830]
39. exoc3 ENSDARG00000014582, ENSDARG00000114378, ENSDARG00000117037 1155 0.97 - 0.970 - - - - - - - exocyst complex component 3 [Source:ZFIN;Acc:ZDB-GENE-030131-5947]
40. lgalsla ENSDARG00000059060 512 0.962 - 0.962 - - - - - - - lectin, galactoside-binding-like a [Source:ZFIN;Acc:ZDB-GENE-060616-24]
41. prdm10 ENSDARG00000104251 510 0.962 - 0.962 - - - - - - - PR domain containing 10 [Source:ZFIN;Acc:ZDB-GENE-050419-74]
42. rfc3 ENSDARG00000055969, ENSDARG00000112402 1448 0.96 - 0.960 - - - - - - - replication factor C (activator 1) 3 [Source:ZFIN;Acc:ZDB-GENE-020809-3]
43. dus4l ENSDARG00000006567 261 0.96 - 0.960 - - - - - - - dihydrouridine synthase 4-like (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040801-233]
44. faub ENSDARG00000043663, ENSDARG00000111416, ENSDARG00000113054 1451 0.959 - 0.959 - - - - - - - Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed b [Source:ZFIN;Acc:ZDB-GENE-050417-416]
45. rac3b ENSDARG00000020795 1523 0.958 - 0.958 - - - - - - - Rac family small GTPase 3b [Source:ZFIN;Acc:ZDB-GENE-080220-21]
46. b2ml ENSDARG00000015887 1060 0.957 - 0.957 - - - - - - - beta-2-microglobulin, like [Source:ZFIN;Acc:ZDB-GENE-040426-2136]
47. Metazoa_SRP_7 Metazoa_SRP_7 513 0.957 - 0.957 - - - - - - -
48. lhfp 700 0.956 - 0.956 - - - - - - - lipoma HMGIC fusion partner
49. si:ch211-198b3.1 si:ch211-198b3.1 765 0.956 - 0.956 - - - - - - -
50. PHF13 ENSDARG00000102023 1102 0.955 - 0.955 - - - - - - - PHD finger protein 13 [Source:ZFIN;Acc:ZDB-GENE-121113-2]
51. loxl2b ENSDARG00000044074 1919 0.954 - 0.954 - - - - - - - lysyl oxidase-like 2b [Source:ZFIN;Acc:ZDB-GENE-050208-29]
52. tubg1 ENSDARG00000015610 2433 0.954 - 0.954 - - - - - - - tubulin, gamma 1 [Source:ZFIN;Acc:ZDB-GENE-040426-836]
53. znrd1 ENSDARG00000036070 684 0.954 - 0.954 - - - - - - - zinc ribbon domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050320-131]
54. syt16 ENSDARG00000030761 322 0.954 - 0.954 - - - - - - - synaptotagmin XVI [Source:ZFIN;Acc:ZDB-GENE-090313-210]
55. epb41l4a ENSDARG00000040087 1013 0.954 - 0.954 - - - - - - - erythrocyte membrane protein band 4.1 like 4A [Source:ZFIN;Acc:ZDB-GENE-990415-20]
56. coro7 ENSDARG00000089616 2141 0.953 - 0.953 - - - - - - - coronin 7 [Source:ZFIN;Acc:ZDB-GENE-050706-137]
57. surf1 ENSDARG00000003592 551 0.953 - 0.953 - - - - - - - surfeit 1 [Source:ZFIN;Acc:ZDB-GENE-041108-2]
58. pik3r4 ENSDARG00000060469 381 0.953 - 0.953 - - - - - - - phosphoinositide-3-kinase, regulatory subunit 4 [Source:ZFIN;Acc:ZDB-GENE-050309-84]
59. ints8 ENSDARG00000057986 1063 0.953 - 0.953 - - - - - - - integrator complex subunit 8 [Source:ZFIN;Acc:ZDB-GENE-050522-556]
60. COL4A3BP COL4A3BP 3288 0.953 - 0.953 - - - - - - -
61. gspt1 ENSDARG00000031048, ENSDARG00000109388 2735 0.952 - 0.952 - - - - - - - G1 to S phase transition 1 [Source:ZFIN;Acc:ZDB-GENE-040822-36]
62. ldb1a ENSDARG00000010137 3035 0.952 - 0.952 - - - - - - - LIM domain binding 1a [Source:ZFIN;Acc:ZDB-GENE-990415-138]
63. kat7 kat7 642 0.952 - 0.952 - - - - - - -
64. NTAN1 ENSDARG00000105182 844 0.952 - 0.952 - - - - - - - N-terminal asparagine amidase [Source:ZFIN;Acc:ZDB-GENE-040426-1896]
65. PLCL2 ENSDARG00000098826 596 0.952 - 0.952 - - - - - - - phospholipase C like 2 [Source:ZFIN;Acc:ZDB-GENE-120426-4]
66. nbr1 nbr1 1161 0.952 - 0.952 - - - - - - -
67. sumf1 ENSDARG00000044203, ENSDARG00000114368 245 0.951 - 0.951 - - - - - - - sulfatase modifying factor 1 [Source:ZFIN;Acc:ZDB-GENE-060421-3113]
68. si:ch73-138e16.8 175 0.951 - 0.951 - - - - - - - si:ch73-138e16.8
69. tmem243a ENSDARG00000042214, ENSDARG00000110407 527 0.951 - 0.951 - - - - - - - transmembrane protein 243, mitochondrial a [Source:ZFIN;Acc:ZDB-GENE-050417-264]
70. lyn ENSDARG00000067916, ENSDARG00000107511 109 0.95 - 0.950 - - - - - - - LYN proto-oncogene, Src family tyrosine kinase [Source:ZFIN;Acc:ZDB-GENE-040912-7]
71. crcp ENSDARG00000069373 730 0.95 - 0.950 - - - - - - - calcitonin gene-related peptide-receptor component protein [Source:ZFIN;Acc:ZDB-GENE-060825-150]
72. AL929007.2 AL929007.2 117 0.949 - 0.949 - - - - - - -
73. hspb9 ENSDARG00000078674 2755 0.949 - 0.949 - - - - - - - heat shock protein, alpha-crystallin-related, 9 [Source:ZFIN;Acc:ZDB-GENE-080214-6]
74. siah1 ENSDARG00000030871 1590 0.948 - 0.948 - - - - - - - siah E3 ubiquitin protein ligase 1 [Source:ZFIN;Acc:ZDB-GENE-010319-31]
75. tdrd3 ENSDARG00000025421 633 0.948 - 0.948 - - - - - - - tudor domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-040426-19]
76. ARHGAP32_1 ARHGAP32_1 124 0.948 - 0.948 - - - - - - -
77. sc5d ENSDARG00000044642 549 0.948 - 0.948 - - - - - - - sterol-C5-desaturase [Source:ZFIN;Acc:ZDB-GENE-040912-56]
78. cdyl ENSDARG00000038985 441 0.948 - 0.948 - - - - - - - chromodomain protein, Y-like [Source:ZFIN;Acc:ZDB-GENE-070912-561]
79. exo1 ENSDARG00000056832, ENSDARG00000112534 186 0.948 - 0.948 - - - - - - - exonuclease 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2828]
80. casp7 ENSDARG00000091836 657 0.947 - 0.947 - - - - - - - caspase 7, apoptosis-related cysteine peptidase [Source:ZFIN;Acc:ZDB-GENE-050522-506]
81. ankra2 ENSDARG00000035399, ENSDARG00000111289 1303 0.947 - 0.947 - - - - - - - ankyrin repeat, family A (RFXANK-like), 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2141]
82. pgd ENSDARG00000015343, ENSDARG00000117150 2512 0.947 - 0.947 - - - - - - - phosphogluconate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-040426-2807]
83. fbxo25 ENSDARG00000075172 153 0.947 - 0.947 - - - - - - - F-box protein 25 [Source:ZFIN;Acc:ZDB-GENE-040801-19]
84. tgm1 ENSDARG00000017799 442 0.947 - 0.947 - - - - - - - transglutaminase 1, K polypeptide [Source:ZFIN;Acc:ZDB-GENE-030131-9032]
85. cog7 ENSDARG00000061372 789 0.947 - 0.947 - - - - - - - component of oligomeric golgi complex 7 [Source:ZFIN;Acc:ZDB-GENE-061013-463]
86. LUZP1 ENSDARG00000075556 55 0.946 - 0.946 - - - - - - - leucine zipper protein 1 [Source:ZFIN;Acc:ZDB-GENE-060810-90]
87. ctdspla ENSDARG00000071673 1447 0.946 - 0.946 - - - - - - - CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like a [Source:ZFIN;Acc:ZDB-GENE-060825-333]
88. LRIF1_1 LRIF1_1 228 0.946 - 0.946 - - - - - - -
89. C18H15orf61 C18H15orf61 104 0.946 - 0.946 - - - - - - -
90. rab34b ENSDARG00000010977 590 0.946 - 0.946 - - - - - - - RAB34, member RAS oncogene family b [Source:ZFIN;Acc:ZDB-GENE-091118-61]
91. esm1 ENSDARG00000104370 186 0.946 - 0.946 - - - - - - - endothelial cell-specific molecule 1 [Source:ZFIN;Acc:ZDB-GENE-060929-748]
92. CT025914.2 CT025914.2 53 0.946 - 0.946 - - - - - - -
93. cdkn2c ENSDARG00000057610 179 0.945 - 0.945 - - - - - - - cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) [Source:ZFIN;Acc:ZDB-GENE-081104-145]
94. WNT7A WNT7A 320 0.945 - 0.945 - - - - - - -
95. asmtl ENSDARG00000021433, ENSDARG00000114151 550 0.944 - 0.944 - - - - - - - acetylserotonin O-methyltransferase-like [Source:ZFIN;Acc:ZDB-GENE-030131-2854]
96. slc25a5 ENSDARG00000092553 626 0.944 - 0.944 - - - - - - - solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 [Source:ZFIN;Acc:ZDB-GENE-020419-9]
97. si:ch211-149b19.3 ENSDARG00000076011 306 0.944 - 0.944 - - - - - - - si:ch211-149b19.3 [Source:ZFIN;Acc:ZDB-GENE-110411-37]
98. ttc38 ENSDARG00000042188, ENSDARG00000113493 307 0.944 - 0.944 - - - - - - - tetratricopeptide repeat domain 38 [Source:ZFIN;Acc:ZDB-GENE-050522-318]
99. endog ENSDARG00000058865 679 0.944 - 0.944 - - - - - - - endonuclease G [Source:ZFIN;Acc:ZDB-GENE-050522-402]
100. ca16b ENSDARG00000060123 389 0.944 - 0.944 - - - - - - - carbonic anhydrase XVI b [Source:ZFIN;Acc:ZDB-GENE-080818-1]

There are 937 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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