Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for usp40

Gene Name Gene ID Reads Annotation
usp40 ENSDARG00000071197 825 ubiquitin specific peptidase 40 [Source:ZFIN;Acc:ZDB-GENE-060518-5]










Genes with expression patterns similar to usp40

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. usp40 ENSDARG00000071197 825 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ubiquitin specific peptidase 40 [Source:ZFIN;Acc:ZDB-GENE-060518-5]
2. cc2d1b ENSDARG00000099445 253 2.354 - 0.744 - 0.786 - 0.824 - - - coiled-coil and C2 domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-030131-1426]
3. clasp1a ENSDARG00000010280 1158 1.917 - - - - 0.993 - - 0.924 - cytoplasmic linker associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-081104-520]
4. armc9 ENSDARG00000087299 459 1.837 - - - - 0.996 0.841 - - - armadillo repeat containing 9 [Source:ZFIN;Acc:ZDB-GENE-100922-67]
5. sh3bp5a ENSDARG00000100529 642 1.801 - 0.805 - - 0.996 - - - - SH3-domain binding protein 5a (BTK-associated) [Source:ZFIN;Acc:ZDB-GENE-111111-2]
6. sh3bgrl3 ENSDARG00000098075 3071 1.788 - - - - 0.990 - - 0.798 - SH3 domain binding glutamate-rich protein like 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1059]
7. pou3f3a ENSDARG00000042032 2835 1.78 - 0.870 - - - - - 0.910 - POU class 3 homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-980526-220]
8. ESCO1 ENSDARG00000077057 1112 1.762 - 0.767 - - 0.995 - - - - establishment of sister chromatid cohesion N-acetyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-130530-818]
9. pik3r3a ENSDARG00000103038 1132 1.762 - - - 0.769 0.993 - - - - phosphoinositide-3-kinase, regulatory subunit 3a (gamma) [Source:ZFIN;Acc:ZDB-GENE-040426-1978]
10. mycla ENSDARG00000006003 1866 1.744 - 0.843 - - - - - 0.901 - MYCL proto-oncogene, bHLH transcription factor a [Source:ZFIN;Acc:ZDB-GENE-040426-2439]
11. gulp1b ENSDARG00000057833 382 1.73 - - - 0.839 - - - 0.891 - GULP, engulfment adaptor PTB domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-120228-2]
12. USP24 ENSDARG00000059925 1294 1.71 - - - - 0.994 0.716 - - - ubiquitin specific peptidase 24 [Source:ZFIN;Acc:ZDB-GENE-030131-4356]
13. mtmr7a ENSDARG00000037101, ENSDARG00000111336 161 1.706 - - - 0.843 - 0.863 - - - myotubularin related protein 7a [Source:ZFIN;Acc:ZDB-GENE-060421-7754]
14. kif26aa ENSDARG00000042368 674 1.7 - - - - - - 0.808 0.892 - kinesin family member 26Aa [Source:ZFIN;Acc:ZDB-GENE-041001-148]
15. neurla neurla 465 1.698 - - - 0.821 - - - 0.877 -
16. PEG3_11 PEG3_11 167 1.698 - 0.838 - - - 0.860 - - -
17. actr1 ENSDARG00000011611 3879 1.691 - 0.733 - - 0.958 - - - - ARP1 actin related protein 1, centractin [Source:ZFIN;Acc:ZDB-GENE-040426-2695]
18. si:dkeyp-104f11.9 ENSDARG00000096715 81 1.687 - - - - - 0.895 0.792 - - si:dkeyp-104f11.9 [Source:ZFIN;Acc:ZDB-GENE-130603-41]
19. dnah9l ENSDARG00000062630 268 1.68 - - - - - - 0.782 0.898 - dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
20. CU459160.1 CU459160.1 104 1.675 - - - - - 0.875 - 0.800 -
21. cx28.8 ENSDARG00000071042 62 1.674 - 0.773 - - - - - 0.901 - connexin 28.8 [Source:ZFIN;Acc:ZDB-GENE-050616-1]
22. proza ENSDARG00000037783, ENSDARG00000116864 500 1.673 - - - - - 0.817 - 0.856 - protein Z, vitamin K-dependent plasma glycoprotein a [Source:ZFIN;Acc:ZDB-GENE-061013-403]
23. zhx2 zhx2 365 1.668 - 0.797 - 0.871 - - - - -
24. plcd1a ENSDARG00000059123 46 1.667 - 0.794 - - - 0.873 - - - phospholipase C, delta 1a [Source:ZFIN;Acc:ZDB-GENE-071004-78]
25. tmpoa ENSDARG00000007315 3638 1.663 0.708 - - - 0.955 - - - - thymopoietin a [Source:ZFIN;Acc:ZDB-GENE-030131-6003]
26. CR376848.1 ENSDARG00000115549 149 1.66 - - - 0.761 - - - 0.899 - neutral cholesterol ester hydrolase 1-like [Source:NCBI gene;Acc:797436]
27. tmem79b ENSDARG00000076861 154 1.65 - 0.781 - - - 0.869 - - - transmembrane protein 79b [Source:ZFIN;Acc:ZDB-GENE-120807-1]
28. ppp2r5eb ENSDARG00000069118 1902 1.646 - 0.829 - - - - - 0.817 - protein phosphatase 2, regulatory subunit B', epsilon isoform b [Source:ZFIN;Acc:ZDB-GENE-030904-6]
29. STIM2 STIM2 644 1.645 - - - - - - 0.738 0.907 -
30. arsk ENSDARG00000059714, ENSDARG00000115105 31 1.633 - 0.775 - - - 0.858 - - - arylsulfatase family, member K [Source:ZFIN;Acc:ZDB-GENE-060929-332]
31. ndc1 ENSDARG00000021120 2417 1.632 - - - 0.758 - - - 0.874 - NDC1 transmembrane nucleoporin [Source:ZFIN;Acc:ZDB-GENE-030131-7176]
32. hsd17b14 ENSDARG00000054842 1394 1.625 - - - 0.794 - - - 0.831 - hydroxysteroid (17-beta) dehydrogenase 14 [Source:ZFIN;Acc:ZDB-GENE-040801-24]
33. si:busm1-105l16.2 ENSDARG00000070858, ENSDARG00000114184 199 1.618 - 0.714 - - - - - 0.904 - si:busm1-105l16.2 [Source:ZFIN;Acc:ZDB-GENE-030616-108]
34. tmem106a ENSDARG00000045075, ENSDARG00000116020 727 1.615 - - - - - 0.726 - 0.889 - transmembrane protein 106A [Source:ZFIN;Acc:ZDB-GENE-030131-5129]
35. fam151a ENSDARG00000058218 40 1.61 - 0.787 - 0.823 - - - - - family with sequence similarity 151, member A [Source:ZFIN;Acc:ZDB-GENE-070705-105]
36. map2k1 ENSDARG00000007825 373 1.607 - - - 0.794 - 0.813 - - - mitogen-activated protein kinase kinase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2759]
37. rint1 ENSDARG00000005547 898 1.602 - 0.703 - - - - - 0.899 - RAD50 interactor 1 [Source:ZFIN;Acc:ZDB-GENE-041210-174]
38. znf598 ENSDARG00000014945 1838 1.589 - - - 0.713 - - - 0.876 - zinc finger protein 598 [Source:ZFIN;Acc:ZDB-GENE-060602-3]
39. rbm27 ENSDARG00000060521 185 1.589 - 0.703 - - - - - 0.886 - RNA binding motif protein 27 [Source:ZFIN;Acc:ZDB-GENE-110411-31]
40. farp1 ENSDARG00000074381 406 1.589 - - - - - 0.810 0.779 - - FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) [Source:ZFIN;Acc:ZDB-GENE-070424-163]
41. pxdc1b ENSDARG00000040309 571 1.586 - - - - - 0.772 - 0.814 - PX domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-091204-294]
42. sspn ENSDARG00000041747, ENSDARG00000114109, ENSDARG00000114643 1228 1.585 - 0.808 - 0.777 - - - - - sarcospan (Kras oncogene-associated gene) [Source:ZFIN;Acc:ZDB-GENE-051127-43]
43. efna2 efna2 428 1.584 - - - - - - 0.719 0.865 -
44. igsf21a ENSDARG00000031049 165 1.579 - 0.786 - 0.793 - - - - - immunoglobin superfamily, member 21a [Source:ZFIN;Acc:ZDB-GENE-050809-118]
45. pcdh7b ENSDARG00000060610 400 1.575 - - - 0.823 - 0.752 - - - protocadherin 7b [Source:ZFIN;Acc:ZDB-GENE-081104-299]
46. CABZ01088061.1 CABZ01088061.1 695 1.574 - 0.701 - - - - - 0.873 -
47. skap2 ENSDARG00000000906 146 1.572 - 0.751 - - - 0.821 - - - src kinase associated phosphoprotein 2 [Source:ZFIN;Acc:ZDB-GENE-030616-438]
48. prkcbb ENSDARG00000022254 319 1.57 - 0.851 - - - - - 0.719 - protein kinase C, beta b [Source:ZFIN;Acc:ZDB-GENE-040426-1178]
49. CABZ01039859.1 ENSDARG00000076361 540 1.568 - 0.710 - - - - - 0.858 - beta-1,4 N-acetylgalactosaminyltransferase 2-like [Source:NCBI gene;Acc:100333855]
50. CR352225.2 CR352225.2 1138 1.566 - 0.788 - - - - - 0.778 -
51. nxph2a ENSDARG00000063224 75 1.556 - 0.799 - - - 0.757 - - - neurexophilin 2a [Source:ZFIN;Acc:ZDB-GENE-060503-124]
52. PCDH12 ENSDARG00000076594 381 1.555 - 0.808 - - - 0.747 - - - protocadherin 12 [Source:ZFIN;Acc:ZDB-GENE-140106-126]
53. bmi1b ENSDARG00000013076 1020 1.541 - - - - - 0.776 - 0.765 - bmi1 polycomb ring finger oncogene 1b [Source:ZFIN;Acc:ZDB-GENE-040116-4]
54. zgc:113209 ENSDARG00000100294 176 1.536 - 0.785 - - - - 0.751 - - zgc:113209 [Source:ZFIN;Acc:ZDB-GENE-050410-8]
55. GANAB_1 GANAB_1 685 1.53 - 0.827 - - - 0.703 - - -
56. lygl1 ENSDARG00000056874 309 1.527 - 0.780 - - - 0.747 - - - lysozyme g-like 1 [Source:ZFIN;Acc:ZDB-GENE-040718-461]
57. ptpn2a ENSDARG00000016481 493 1.524 - 0.706 - - - - 0.818 - - protein tyrosine phosphatase, non-receptor type 2, a [Source:ZFIN;Acc:ZDB-GENE-040426-1196]
58. asb2a asb2a 845 1.524 - - - - - - 0.718 0.806 -
59. CABZ01071757.1 CABZ01071757.1 108 1.52 - 0.724 - - - 0.796 - - -
60. adcy6a ENSDARG00000061445, ENSDARG00000114782 500 1.518 - 0.747 - - - - 0.771 - - adenylate cyclase 6a [Source:ZFIN;Acc:ZDB-GENE-060221-1]
61. CLINT1 CLINT1 558 1.517 - - - - - 0.722 0.795 - -
62. CR382298.2 CR382298.2 1083 1.502 - - - - - - 0.718 0.784 -
63. CCDC176 CCDC176 118 1.496 - - - - - 0.702 0.794 - -
64. zc3h7b 2936 1.494 - 0.747 - - - 0.747 - - - zinc finger CCCH-type containing 7B
65. fbxo32 ENSDARG00000040277 93 1.487 - 0.736 - - - 0.751 - - - F-box protein 32 [Source:ZFIN;Acc:ZDB-GENE-040426-1040]
66. zgc:64106 ENSDARG00000011371 673 1.484 - 0.745 - 0.739 - - - - - zgc:64106 [Source:ZFIN;Acc:ZDB-GENE-040426-1370]
67. tspan18a ENSDARG00000056656 530 1.464 - - - - - - 0.736 0.728 - tetraspanin 18a [Source:ZFIN;Acc:ZDB-GENE-040718-232]
68. dazap2 ENSDARG00000007867 1805 1.458 - 0.734 - - - 0.724 - - - DAZ associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-3036]
69. FAM117A_1 FAM117A_1 360 1.455 - 0.712 - 0.743 - - - - -
70. C1H19orf53 C1H19orf53 329 1.455 - 0.735 - 0.720 - - - - -
71. CABZ01115322.1 CABZ01115322.1 1283 1.452 - 0.742 - - - - - 0.710 -
72. rtn4rl1a ENSDARG00000007856 242 1.449 - 0.748 - - - 0.701 - - - reticulon 4 receptor-like 1a [Source:ZFIN;Acc:ZDB-GENE-091118-38]
73. gmfb ENSDARG00000028327 6522 1.446 - 0.725 - - - 0.721 - - - glia maturation factor, beta [Source:ZFIN;Acc:ZDB-GENE-040426-2114]
74. il12rb2l ENSDARG00000074850 407 0.996 - - - - 0.996 - - - - interleukin 12 receptor, beta 2a, like [Source:ZFIN;Acc:ZDB-GENE-080107-6]
75. ccdc53 982 0.996 - - - - 0.996 - - - - coiled-coil domain containing 53
76. adcyap1b ENSDARG00000027740 1539 0.996 - - - - 0.996 - - - - adenylate cyclase activating polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-041010-89]
77. zgc:110699 ENSDARG00000017474 381 0.996 - - - - 0.996 - - - - zgc:110699 [Source:ZFIN;Acc:ZDB-GENE-050522-487]
78. eif3d ENSDARG00000021257 1524 0.996 - - - - 0.996 - - - - eukaryotic translation initiation factor 3, subunit D [Source:ZFIN;Acc:ZDB-GENE-030131-8442]
79. otx2 766 0.996 - - - - 0.996 - - - - orthodenticle homeobox 2, transcript variant X2
80. atp1b4 ENSDARG00000053262 1337 0.996 - - - - 0.996 - - - - ATPase Na+/K+ transporting subunit beta 4 [Source:ZFIN;Acc:ZDB-GENE-070412-1]
81. nkx2.3 ENSDARG00000039095, ENSDARG00000113490 493 0.996 - - - - 0.996 - - - - NK2 homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-990415-178]
82. USP2_1 USP2_1 544 0.996 - - - - 0.996 - - - -
83. CABZ01027552.1 CABZ01027552.1 760 0.996 - - - - 0.996 - - - -
84. tarsl2 ENSDARG00000092774 505 0.996 - - - - 0.996 - - - - threonyl-tRNA synthetase-like 2 [Source:ZFIN;Acc:ZDB-GENE-081104-490]
85. SNORA70 SNORA70 511 0.996 - - - - 0.996 - - - -
86. cdk5 ENSDARG00000056683 1998 0.995 - - - - 0.995 - - - - cyclin-dependent kinase 5 [Source:ZFIN;Acc:ZDB-GENE-010131-2]
87. exosc10 ENSDARG00000037708, ENSDARG00000115953 1121 0.995 - - - - 0.995 - - - - exosome component 10 [Source:ZFIN;Acc:ZDB-GENE-040426-781]
88. cdkn1a ENSDARG00000076554 591 0.995 - - - - 0.995 - - - - cyclin-dependent kinase inhibitor 1A [Source:ZFIN;Acc:ZDB-GENE-070705-7]
89. ticrr ENSDARG00000045605 739 0.995 - - - - 0.995 - - - - TopBP1-interacting, checkpoint, and replication regulator [Source:ZFIN;Acc:ZDB-GENE-040728-1]
90. sptlc1 ENSDARG00000042995, ENSDARG00000112519 1291 0.995 - - - - 0.995 - - - - serine palmitoyltransferase, long chain base subunit 1 [Source:ZFIN;Acc:ZDB-GENE-050522-61]
91. WIPF3 WIPF3 804 0.995 - - - - 0.995 - - - -
92. wu:fc26g07 wu:fc26g07 1165 0.994 - - - - 0.994 - - - -
93. rnaseh1 ENSDARG00000042571 922 0.994 - - - - 0.994 - - - - ribonuclease H1 [Source:ZFIN;Acc:ZDB-GENE-040718-407]
94. si:dkey-251i10.2 ENSDARG00000093957 4424 0.994 - - - - 0.994 - - - - si:dkey-251i10.2 [Source:ZFIN;Acc:ZDB-GENE-050506-102]
95. cog4 ENSDARG00000054264 785 0.994 - - - - 0.994 - - - - component of oligomeric golgi complex 4 [Source:ZFIN;Acc:ZDB-GENE-060312-33]
96. znf280d ENSDARG00000077013 1387 0.994 - - - - 0.994 - - - - zinc finger protein 280D [Source:ZFIN;Acc:ZDB-GENE-030131-2260]
97. si:ch73-86n18.1 ENSDARG00000056379, ENSDARG00000112771 2391 0.994 - - - - 0.994 - - - - si:ch73-86n18.1 [Source:ZFIN;Acc:ZDB-GENE-141216-19]
98. stx6 ENSDARG00000042742, ENSDARG00000115635 1208 0.994 - - - - 0.994 - - - - syntaxin 6 [Source:ZFIN;Acc:ZDB-GENE-030131-858]
99. rbpja ENSDARG00000003398 1309 0.994 - - - - 0.994 - - - - recombination signal binding protein for immunoglobulin kappa J region a [Source:ZFIN;Acc:ZDB-GENE-031117-1]
100. itm2ca ENSDARG00000043448 1265 0.994 - - - - 0.994 - - - - integral membrane protein 2Ca [Source:ZFIN;Acc:ZDB-GENE-040718-284]

There are 1708 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA