Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for usp4

Gene Name Gene ID Reads Annotation
usp4 ENSDARG00000014770 1684 ubiquitin specific peptidase 4 (proto-oncogene) [Source:ZFIN;Acc:ZDB-GENE-041008-187]










Genes with expression patterns similar to usp4

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. usp4 ENSDARG00000014770 1684 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ubiquitin specific peptidase 4 (proto-oncogene) [Source:ZFIN;Acc:ZDB-GENE-041008-187]
2. hadhb ENSDARG00000102055 9700 2.431 - 0.741 - 0.984 - - 0.706 - - hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta [Source:ZFIN;Acc:ZDB-GENE-030131-8550]
3. wu:fj13e08 1223 1.993 0.994 - - 0.999 - - - - - wu:fj13e08
4. ypel2b ENSDARG00000087258, ENSDARG00000116766 539 1.956 0.992 - - - - - - 0.964 - yippee-like 2b [Source:ZFIN;Acc:ZDB-GENE-110419-2]
5. glud1a ENSDARG00000008816, ENSDARG00000114252 3468 1.939 0.942 - - 0.997 - - - - - glutamate dehydrogenase 1a [Source:ZFIN;Acc:ZDB-GENE-030114-2]
6. gpx4b ENSDARG00000076836 8085 1.897 0.921 - - 0.976 - - - - - glutathione peroxidase 4b [Source:ZFIN;Acc:ZDB-GENE-030410-3]
7. ccdc22 ENSDARG00000052379 2276 1.881 - - - 0.999 - - - 0.882 - coiled-coil domain containing 22 [Source:ZFIN;Acc:ZDB-GENE-050913-93]
8. AP3B1 2363 1.832 0.953 - - - - - - 0.879 - adaptor related protein complex 3 beta 1 subunit
9. taf10 ENSDARG00000068641 3333 1.783 - - - 0.991 - - 0.792 - - TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-060526-334]
10. ndufb10 ENSDARG00000028889 7680 1.78 0.920 - - - - - - 0.860 - NADH:ubiquinone oxidoreductase subunit B10 [Source:ZFIN;Acc:ZDB-GENE-040426-1691]
11. pnn ENSDARG00000015851 1269 1.779 - 0.827 - - - - - 0.952 - pinin, desmosome associated protein [Source:ZFIN;Acc:ZDB-GENE-060519-3]
12. FRMPD1_1 FRMPD1_1 1589 1.771 0.992 0.779 - - - - - - -
13. kif5ba ENSDARG00000074131, ENSDARG00000103394 5232 1.77 0.982 - - - - - - 0.788 - kinesin family member 5B, a [Source:ZFIN;Acc:ZDB-GENE-070629-2]
14. angptl4 ENSDARG00000035859 2701 1.765 - - - 0.998 - - 0.767 - - angiopoietin-like 4 [Source:ZFIN;Acc:ZDB-GENE-041111-222]
15. pygmb ENSDARG00000013317 5454 1.764 0.964 - - - - - 0.800 - - phosphorylase, glycogen, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-1206]
16. COL22A1 COL22A1 4473 1.758 - - - 0.991 - - 0.767 - -
17. ahcyl2 ENSDARG00000039343 1210 1.744 0.988 - - - - - 0.756 - - adenosylhomocysteinase-like 2 [Source:ZFIN;Acc:ZDB-GENE-040115-5]
18. zgc:174877 ENSDARG00000079278 143 1.742 - 0.776 - - - - - 0.966 - zgc:174877 [Source:ZFIN;Acc:ZDB-GENE-041008-66]
19. syf2 ENSDARG00000004706 2463 1.734 - - - 0.998 - 0.736 - - - SYF2 pre-mRNA-splicing factor [Source:ZFIN;Acc:ZDB-GENE-040801-170]
20. BX649282.1 ENSDARG00000105704 347 1.728 - - - - - - 0.806 0.922 -
21. mybphb ENSDARG00000003081 5208 1.725 0.938 - - - - - 0.787 - - myosin binding protein Hb [Source:ZFIN;Acc:ZDB-GENE-030131-9794]
22. vps4a ENSDARG00000030114 933 1.72 0.990 - - - - - 0.730 - - vacuolar protein sorting 4a homolog A (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060929-388]
23. wu:fb17g07 wu:fb17g07 10567 1.716 - - - 0.976 - - 0.740 - -
24. zgc:55733 ENSDARG00000103845 1550 1.715 0.992 - - - - - 0.723 - - zgc:55733 [Source:ZFIN;Acc:ZDB-GENE-040426-791]
25. TFPT ENSDARG00000089572, ENSDARG00000111694 112 1.714 - - - - - 0.747 - 0.967 - TCF3 (E2A) fusion partner [Source:ZFIN;Acc:ZDB-GENE-140106-241]
26. EPS8L2 ENSDARG00000058108 484 1.714 - 0.791 - - - - - 0.923 - EPS8 like 2 [Source:ZFIN;Acc:ZDB-GENE-131121-340]
27. CU459072.2 CU459072.2 322 1.711 0.990 0.721 - - - - - - -
28. cox14 ENSDARG00000092124 2229 1.709 0.978 0.731 - - - - - - - cytochrome c oxidase assembly factor COX14 [Source:ZFIN;Acc:ZDB-GENE-060503-626]
29. paip2b ENSDARG00000008706 4255 1.704 - 0.717 - 0.987 - - - - - poly(A) binding protein interacting protein 2B [Source:ZFIN;Acc:ZDB-GENE-040426-1736]
30. rpl13a ENSDARG00000044093, ENSDARG00000116541 10473 1.702 - - - 0.984 - - 0.718 - - ribosomal protein L13a [Source:ZFIN;Acc:ZDB-GENE-030131-168]
31. zgc:158296 ENSDARG00000070923 3935 1.702 0.885 - - - - - 0.817 - - zgc:158296 [Source:ZFIN;Acc:ZDB-GENE-070112-1272]
32. uqcrb ENSDARG00000011146 183 1.7 - 0.807 - - - - 0.893 - - ubiquinol-cytochrome c reductase binding protein [Source:ZFIN;Acc:ZDB-GENE-050522-542]
33. timm10 ENSDARG00000069116 4459 1.699 - - - - - - 0.745 0.954 - translocase of inner mitochondrial membrane 10 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040718-427]
34. ttc27 ENSDARG00000007918 1228 1.699 0.990 - - - - - 0.709 - - tetratricopeptide repeat domain 27 [Source:ZFIN;Acc:ZDB-GENE-030102-1]
35. spint2 ENSDARG00000069476, ENSDARG00000113265 4147 1.698 - 0.702 - 0.996 - - - - - serine peptidase inhibitor, Kunitz type, 2 [Source:ZFIN;Acc:ZDB-GENE-061013-323]
36. creb1a ENSDARG00000053586 5068 1.698 - 0.701 - 0.997 - - - - - cAMP responsive element binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-040426-750]
37. pdcd4a ENSDARG00000021702 7293 1.69 - - - 0.986 - - 0.704 - - programmed cell death 4a [Source:ZFIN;Acc:ZDB-GENE-040426-1920]
38. nudt5 ENSDARG00000078073 779 1.689 0.964 - - - - 0.725 - - - nudix (nucleoside diphosphate linked moiety X)-type motif 5 [Source:ZFIN;Acc:ZDB-GENE-040625-63]
39. TCAIM ENSDARG00000079881 424 1.689 - - - - - - 0.745 0.944 - T cell activation inhibitor, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-160113-67]
40. pus7 ENSDARG00000031774 195 1.684 - - - - - 0.711 - 0.973 - pseudouridylate synthase 7 [Source:ZFIN;Acc:ZDB-GENE-060620-1]
41. pik3c3 ENSDARG00000054829 559 1.68 - - - - - - 0.737 0.943 - phosphatidylinositol 3-kinase, catalytic subunit type 3 [Source:ZFIN;Acc:ZDB-GENE-050410-13]
42. mrpl37 ENSDARG00000062916 1600 1.679 - - - - - - 0.847 0.832 - mitochondrial ribosomal protein L37 [Source:ZFIN;Acc:ZDB-GENE-050309-20]
43. pdlim3b ENSDARG00000014248, ENSDARG00000111275 708 1.679 - - - - - - 0.725 0.954 - PDZ and LIM domain 3b [Source:ZFIN;Acc:ZDB-GENE-060130-104]
44. syne1a ENSDARG00000009499, ENSDARG00000116204 601 1.675 - - - - - - 0.770 0.905 - spectrin repeat containing, nuclear envelope 1a [Source:ZFIN;Acc:ZDB-GENE-030131-4172]
45. C20H1orf112 C20H1orf112 316 1.668 - - - - - - 0.727 0.941 -
46. ANGPT4 ENSDARG00000076787 140 1.668 - 0.702 - - - - - 0.966 - angiopoietin 4 [Source:ZFIN;Acc:ZDB-GENE-110104-1]
47. csad ENSDARG00000026348 1461 1.667 0.956 - - - - - - 0.711 - cysteine sulfinic acid decarboxylase [Source:ZFIN;Acc:ZDB-GENE-041114-36]
48. keap1b ENSDARG00000074634 1513 1.664 - 0.845 - - - - - 0.819 - kelch-like ECH-associated protein 1b [Source:ZFIN;Acc:ZDB-GENE-080508-1]
49. nrg2a ENSDARG00000077818 854 1.66 - - - - - 0.713 - 0.947 - neuregulin 2a [Source:ZFIN;Acc:ZDB-GENE-070615-10]
50. pelo ENSDARG00000055477 1927 1.657 0.952 - - - - - 0.705 - - pelota mRNA surveillance and ribosome rescue factor [Source:ZFIN;Acc:ZDB-GENE-040426-1074]
51. DNAJA4 ENSDARG00000051762 5657 1.656 0.860 - - - - - 0.796 - - DnaJ heat shock protein family (Hsp40) member A4 [Source:HGNC Symbol;Acc:HGNC:14885]
52. zgc:66479 ENSDARG00000008732 3347 1.656 0.955 - - - - - 0.701 - - zgc:66479 [Source:ZFIN;Acc:ZDB-GENE-031030-10]
53. heatr3 ENSDARG00000036076 944 1.647 - - - - - - 0.782 0.865 - HEAT repeat containing 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1876]
54. cox6c ENSDARG00000038577 16845 1.644 - - - 0.927 - - 0.717 - - cytochrome c oxidase subunit 6C [Source:ZFIN;Acc:ZDB-GENE-040724-95]
55. flad1 ENSDARG00000070390 604 1.642 - - - - - - 0.752 0.890 - flavin adenine dinucleotide synthetase 1 [Source:ZFIN;Acc:ZDB-GENE-040822-44]
56. ube2i ube2i 13024 1.642 0.878 - - - - - 0.764 - -
57. CABZ01080590.2 CABZ01080590.2 2038 1.638 - - - - - - 0.817 0.821 -
58. smtnl1 ENSDARG00000041257 7410 1.634 - - - - - - 0.768 0.866 - smoothelin-like 1 [Source:ZFIN;Acc:ZDB-GENE-050306-23]
59. pfdn4 ENSDARG00000061228 8266 1.628 0.909 - - - - - 0.719 - - prefoldin subunit 4 [Source:ZFIN;Acc:ZDB-GENE-100922-122]
60. ddx39b ENSDARG00000036069 1151 1.62 - - - - - - 0.756 0.864 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:ZFIN;Acc:ZDB-GENE-040426-1259]
61. igsf21a ENSDARG00000031049 165 1.618 - 0.761 - - - - - 0.857 - immunoglobin superfamily, member 21a [Source:ZFIN;Acc:ZDB-GENE-050809-118]
62. park7 ENSDARG00000116835 1229 1.613 - - - - - - 0.764 0.849 - parkinson protein 7 [Source:ZFIN;Acc:ZDB-GENE-041010-5]
63. foxo3b ENSDARG00000042904 5046 1.612 - 0.845 - - - - 0.767 - - forkhead box O3b [Source:ZFIN;Acc:ZDB-GENE-990708-6]
64. dnajc18 ENSDARG00000056005 8084 1.606 - - - - - - 0.737 0.869 - DnaJ (Hsp40) homolog, subfamily C, member 18 [Source:ZFIN;Acc:ZDB-GENE-030131-8019]
65. ago4 ENSDARG00000100854 496 1.602 - 0.876 - - - 0.726 - - - argonaute RISC catalytic component 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5357]
66. rchy1 ENSDARG00000016710, ENSDARG00000109668, ENSDARG00000115626 477 1.601 - - - - - 0.761 - 0.840 - ring finger and CHY zinc finger domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040801-73]
67. ktn1 ENSDARG00000032802 6251 1.593 - - - - - - 0.745 0.848 - kinectin 1 [Source:ZFIN;Acc:ZDB-GENE-030408-4]
68. farsb ENSDARG00000016864 6776 1.59 - - - - - - 0.766 0.824 - phenylalanyl-tRNA synthetase subunit beta [Source:ZFIN;Acc:ZDB-GENE-021206-2]
69. cttnbp2 ENSDARG00000040991 1697 1.586 - - - - - 0.801 0.785 - - cortactin binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8134]
70. tsnaxip1 ENSDARG00000030512 197 1.584 - - - - - 0.808 0.776 - - translin-associated factor X interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-070424-39]
71. ryr1b ENSDARG00000023797 5693 1.583 0.808 - - - - - 0.775 - - ryanodine receptor 1b (skeletal) [Source:ZFIN;Acc:ZDB-GENE-070705-417]
72. sort1a ENSDARG00000029402, ENSDARG00000117178 1480 1.582 - - - - - - 0.811 0.771 - sortilin 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2329]
73. ITFG3 ITFG3 1803 1.576 - 0.702 - - - - - 0.874 -
74. enah ENSDARG00000032049 1526 1.569 - - - - - - 0.756 0.813 - enabled homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010323-11]
75. arl13b ENSDARG00000012763 458 1.569 - 0.779 - - - 0.790 - - - ADP-ribosylation factor-like 13b [Source:ZFIN;Acc:ZDB-GENE-021217-3]
76. IQCG ENSDARG00000068678 77 1.569 - 0.717 - - - - - 0.852 - IQ motif containing G [Source:ZFIN;Acc:ZDB-GENE-050419-109]
77. si:ch211-207e19.11 si:ch211-207e19.11 9604 1.562 0.832 - - - - - 0.730 - -
78. atp5o 10343 1.562 0.842 - - - - - 0.720 - - ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit
79. rpl37 ENSDARG00000034291, ENSDARG00000076360 13668 1.559 - - - 0.833 - - 0.726 - - ribosomal protein L37 [Source:ZFIN;Acc:ZDB-GENE-040625-39]
80. LMAN2L LMAN2L 555 1.558 - - - - - 0.750 - 0.808 -
81. ATP5J 343 1.556 - - - - - - 0.702 0.854 - ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6, transcript variant X2
82. ifrd1 ENSDARG00000068708 2858 1.542 - 0.800 - - - 0.742 - - - interferon-related developmental regulator 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6132]
83. mmadhc ENSDARG00000005870 1298 1.537 - 0.793 - - - - - 0.744 - methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria [Source:ZFIN;Acc:ZDB-GENE-040704-50]
84. C1QBP ENSDARG00000039887 11186 1.536 - - - - - - 0.760 0.776 - complement component 1, q subcomponent binding protein [Source:ZFIN;Acc:ZDB-GENE-050417-408]
85. cdv3 ENSDARG00000023028 12380 1.536 0.765 - - - - - 0.771 - - carnitine deficiency-associated gene expressed in ventricle 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6034]
86. si:ch211-67e16.4 ENSDARG00000086317 609 1.534 - 0.834 - - - - 0.700 - - si:ch211-67e16.4 [Source:ZFIN;Acc:ZDB-GENE-070912-311]
87. oxct1a ENSDARG00000013063 1517 1.532 - - - - - - 0.734 0.798 - 3-oxoacid CoA transferase 1a [Source:ZFIN;Acc:ZDB-GENE-040723-3]
88. ncl ENSDARG00000002710 16951 1.528 0.725 - - 0.803 - - - - - nucleolin [Source:ZFIN;Acc:ZDB-GENE-030131-6986]
89. arap3 ENSDARG00000076801 725 1.527 - 0.782 - - - 0.745 - - - ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 [Source:ZFIN;Acc:ZDB-GENE-091019-1]
90. rnf14 ENSDARG00000043905 862 1.524 - 0.738 - - - - - 0.786 - ring finger protein 14 [Source:ZFIN;Acc:ZDB-GENE-040625-65]
91. spred2b ENSDARG00000008372 405 1.522 - 0.782 - - - - 0.740 - - sprouty-related, EVH1 domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-040426-2342]
92. slc7a6os ENSDARG00000010596 1599 1.519 - 0.816 - - - - 0.703 - - solute carrier family 7, member 6 opposite strand [Source:ZFIN;Acc:ZDB-GENE-041114-32]
93. ctr9 ENSDARG00000009170 1265 1.517 - 0.722 - - - - 0.795 - - CTR9 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-030131-3782]
94. mycla ENSDARG00000006003 1866 1.516 - 0.755 - - - - 0.761 - - MYCL proto-oncogene, bHLH transcription factor a [Source:ZFIN;Acc:ZDB-GENE-040426-2439]
95. med19b ENSDARG00000009472 936 1.512 - 0.746 - - - - - 0.766 - mediator complex subunit 19b [Source:ZFIN;Acc:ZDB-GENE-040727-4]
96. si:ch211-120j21.1 si:ch211-120j21.1 638 1.509 - 0.746 - - - - 0.763 - -
97. faua ENSDARG00000099022 82901 1.508 - - - 0.752 - - 0.756 - - Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
98. mtdhb ENSDARG00000004939 1225 1.5 - - - - - - 0.709 0.791 - metadherin b [Source:ZFIN;Acc:ZDB-GENE-090929-2]
99. hsp90aa1.1 ENSDARG00000010478 47784 1.495 - - - - - - 0.781 0.714 - heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
100. fam174b ENSDARG00000068709 1171 1.494 - 0.783 - - - - 0.711 - - family with sequence similarity 174, member B [Source:ZFIN;Acc:ZDB-GENE-050419-78]

There are 2047 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA