Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for usp39

Gene Name Gene ID Reads Annotation
usp39 ENSDARG00000041908 501 ubiquitin specific peptidase 39 [Source:ZFIN;Acc:ZDB-GENE-030131-966]










Genes with expression patterns similar to usp39

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. usp39 ENSDARG00000041908 501 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ubiquitin specific peptidase 39 [Source:ZFIN;Acc:ZDB-GENE-030131-966]
2. nox1 ENSDARG00000087574 60 1.687 - - - 0.776 - - 0.911 - - NADPH oxidase 1 [Source:ZFIN;Acc:ZDB-GENE-070404-1]
3. polr2f ENSDARG00000036625, ENSDARG00000110198 1330 1.615 - - - 0.773 - - 0.842 - - polymerase (RNA) II (DNA directed) polypeptide F [Source:ZFIN;Acc:ZDB-GENE-040718-279]
4. fgf13a ENSDARG00000035056 752 1.611 - 0.793 - - - 0.818 - - - fibroblast growth factor 13a [Source:ZFIN;Acc:ZDB-GENE-041114-101]
5. CABIN1 ENSDARG00000079326 905 1.599 - - - - - 0.813 - - 0.786 calcineurin binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1735]
6. SIPA1L3 ENSDARG00000061699 268 1.596 - 0.730 - - - - 0.866 - - signal-induced proliferation-associated 1 like 3 [Source:ZFIN;Acc:ZDB-GENE-050420-109]
7. rpp40 ENSDARG00000017605 63 1.591 - 0.759 - - - - 0.832 - - ribonuclease P/MRP 40 subunit [Source:ZFIN;Acc:ZDB-GENE-040625-161]
8. wdr92 ENSDARG00000037334 329 1.586 - 0.767 - 0.819 - - - - - WD repeat domain 92 [Source:ZFIN;Acc:ZDB-GENE-050417-93]
9. yipf2 ENSDARG00000021399 702 1.582 - - - 0.751 - - 0.831 - - Yip1 domain family, member 2 [Source:ZFIN;Acc:ZDB-GENE-040724-124]
10. sorbs1 ENSDARG00000103435 2297 1.566 - 0.770 - 0.796 - - - - - sorbin and SH3 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-090313-168]
11. creld2 ENSDARG00000029071, ENSDARG00000116264 333 1.566 - - - 0.804 - - - - 0.762 cysteine-rich with EGF-like domains 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1626]
12. prmt10 prmt10 312 1.551 - 0.749 - - - - 0.802 - -
13. skilb ENSDARG00000022904 300 1.542 - - - 0.814 - - - - 0.728 SKI-like proto-oncogene b [Source:ZFIN;Acc:ZDB-GENE-080723-40]
14. suz12a ENSDARG00000070256 2229 1.537 - - - - - 0.805 0.732 - - SUZ12, polycomb repressive complex 2 subunit a [Source:ZFIN;Acc:ZDB-GENE-040801-36]
15. lhfpl4a ENSDARG00000111810 206 1.535 - - - 0.828 - 0.707 - - - lipoma HMGIC fusion partner-like 4a [Source:ZFIN;Acc:ZDB-GENE-111017-1]
16. prdm9 ENSDARG00000005382, ENSDARG00000110150 572 1.534 - - - 0.829 - 0.705 - - - PR domain containing 9 [Source:ZFIN;Acc:ZDB-GENE-040426-1319]
17. ache ENSDARG00000031796 1985 1.533 - 0.738 - - - 0.795 - - - acetylcholinesterase [Source:ZFIN;Acc:ZDB-GENE-010906-1]
18. csde1_1 ENSDARG00000074758 2759 1.533 - - - 0.796 - - 0.737 - - cold shock domain containing E1, RNA-binding [Source:ZFIN;Acc:ZDB-GENE-030131-8623]
19. RNF145 RNF145 1364 1.528 - - - 0.820 - 0.708 - - -
20. six2a ENSDARG00000058004, ENSDARG00000115214 414 1.525 - - - 0.817 - - - - 0.708 SIX homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-010412-1]
21. snx11 ENSDARG00000052522 1030 1.519 - - - - - - 0.794 - 0.725 sorting nexin 11 [Source:ZFIN;Acc:ZDB-GENE-041111-253]
22. znf236 ENSDARG00000095890 410 1.519 - - - 0.796 - 0.723 - - - zinc finger protein 236 [Source:ZFIN;Acc:ZDB-GENE-041111-195]
23. ccnt1 ENSDARG00000017525 1888 1.512 - - - - - 0.752 0.760 - - cyclin T1 [Source:ZFIN;Acc:ZDB-GENE-030131-6397]
24. taf13 ENSDARG00000070834, ENSDARG00000109314 1982 1.512 - - - - - 0.729 0.783 - - TATA-box binding protein associated factor 13 [Source:ZFIN;Acc:ZDB-GENE-030131-2873]
25. notch1a ENSDARG00000103554 498 1.511 - 0.788 - - - 0.723 - - - notch 1a [Source:ZFIN;Acc:ZDB-GENE-990415-173]
26. si:dkey-204f11.64 ENSDARG00000094695 586 1.509 - - - 0.747 - - - - 0.762 si:dkey-204f11.64 [Source:ZFIN;Acc:ZDB-GENE-030131-8332]
27. ube3c ENSDARG00000035978, ENSDARG00000112229 787 1.509 - - - 0.788 - - - - 0.721 ubiquitin protein ligase E3C [Source:ZFIN;Acc:ZDB-GENE-040426-1211]
28. ruvbl2 ENSDARG00000055639, ENSDARG00000115705 890 1.5 - - - 0.745 - 0.755 - - - RuvB-like AAA ATPase 2 [Source:ZFIN;Acc:ZDB-GENE-030109-1]
29. dnajb11 ENSDARG00000015088 1404 1.495 - - - 0.761 - - 0.734 - - DnaJ (Hsp40) homolog, subfamily B, member 11 [Source:ZFIN;Acc:ZDB-GENE-031113-9]
30. mapk11 ENSDARG00000045836 846 1.491 - - - 0.738 - 0.753 - - - mitogen-activated protein kinase 11 [Source:ZFIN;Acc:ZDB-GENE-040625-75]
31. zgc:113336 ENSDARG00000104078 147 1.491 - - - - - 0.760 - - 0.731 zgc:113336 [Source:ZFIN;Acc:ZDB-GENE-050320-55]
32. tmem242 ENSDARG00000037070 1081 1.487 - 0.747 - - - - - - 0.740 transmembrane protein 242 [Source:ZFIN;Acc:ZDB-GENE-040724-146]
33. mark4a ENSDARG00000023914, ENSDARG00000112220 445 1.484 - - - 0.739 - 0.745 - - - MAP/microtubule affinity-regulating kinase 4a [Source:ZFIN;Acc:ZDB-GENE-060531-156]
34. spopla ENSDARG00000010563 775 1.484 - - - 0.775 - - - - 0.709 speckle-type POZ protein-like a [Source:ZFIN;Acc:ZDB-GENE-050320-3]
35. parpbp ENSDARG00000029944 316 1.48 - - - - - 0.730 - - 0.750 PARP1 binding protein [Source:ZFIN;Acc:ZDB-GENE-060421-5714]
36. ss18 ENSDARG00000002970 2618 1.477 - - - - - 0.773 0.704 - - synovial sarcoma translocation, chromosome 18 (H. sapiens) [Source:ZFIN;Acc:ZDB-GENE-030131-4867]
37. nck1b ENSDARG00000075369 1596 1.476 - - - 0.702 - - 0.774 - - NCK adaptor protein 1b [Source:ZFIN;Acc:ZDB-GENE-090317-1]
38. srprb ENSDARG00000030949 1670 1.474 - - - - - - 0.728 - 0.746 SRP receptor subunit beta [Source:ZFIN;Acc:ZDB-GENE-040718-311]
39. C13H20orf194 C13H20orf194 580 1.468 - - - 0.730 - 0.738 - - -
40. AL929322.1 AL929322.1 300 1.45 - 0.748 - - - 0.702 - - -
41. wdr62 ENSDARG00000060312 554 1.433 - - - - - 0.710 0.723 - - WD repeat domain 62 [Source:ZFIN;Acc:ZDB-GENE-060503-291]
42. klhl41a ENSDARG00000068888 1034 1.432 - 0.716 - - - - 0.716 - - kelch-like family member 41a [Source:ZFIN;Acc:ZDB-GENE-081105-22]
43. CBFA2T3 ENSDARG00000079012 6799 1.429 - 0.704 - - - 0.725 - - - core-binding factor, runt domain, alpha subunit 2; translocated to, 3 [Source:ZFIN;Acc:ZDB-GENE-070209-2]
44. ufd1l ENSDARG00000010051 893 1.408 - - - - - 0.708 - - 0.700 ubiquitin recognition factor in ER associated degradation 1 [Source:ZFIN;Acc:ZDB-GENE-040718-150]
45. sdf2l1 ENSDARG00000035631 615 0.971 - - - - - - 0.971 - - stromal cell-derived factor 2-like 1 [Source:ZFIN;Acc:ZDB-GENE-040808-46]
46. tada2b ENSDARG00000003769 507 0.934 - - - - - - 0.934 - - transcriptional adaptor 2B [Source:ZFIN;Acc:ZDB-GENE-050522-557]
47. btbd6a ENSDARG00000076440 748 0.929 - - - - - - 0.929 - - BTB (POZ) domain containing 6a [Source:ZFIN;Acc:ZDB-GENE-080218-26]
48. defbl1 ENSDARG00000075161 211 0.911 - - - - - - 0.911 - - defensin, beta-like 1 [Source:ZFIN;Acc:ZDB-GENE-070207-1]
49. dnajc3 dnajc3 802 0.911 - - - - - - 0.911 - -
50. hmcn1 ENSDARG00000016936 1706 0.909 - - - - - - 0.909 - - hemicentin 1 [Source:ZFIN;Acc:ZDB-GENE-041014-322]
51. htatip htatip 1553 0.907 - - - - - - 0.907 - -
52. zgc:77486 ENSDARG00000013711, ENSDARG00000093978, ENSDARG00000111468, ENSDARG00000116962 139 0.896 - - - - - - 0.896 - - zgc:77486 [Source:ZFIN;Acc:ZDB-GENE-040426-2056]
53. prkag3b ENSDARG00000000369 1945 0.895 - 0.895 - - - - - - - protein kinase, AMP-activated, gamma 3b non-catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-060421-6938]
54. crlf1a ENSDARG00000024365 222 0.893 - 0.893 - - - - - - - cytokine receptor-like factor 1a [Source:ZFIN;Acc:ZDB-GENE-040718-397]
55. tuft1b ENSDARG00000071010 909 0.881 - - - - - - 0.881 - - tuftelin 1b [Source:ZFIN;Acc:ZDB-GENE-060503-150]
56. gli1 ENSDARG00000101244 534 0.879 - 0.879 - - - - - - - GLI family zinc finger 1 [Source:ZFIN;Acc:ZDB-GENE-030321-1]
57. si:ch211-241n15.2 si:ch211-241n15.2 435 0.878 - - - 0.878 - - - - -
58. gabpa ENSDARG00000069289, ENSDARG00000110923 1536 0.878 - - - - - - 0.878 - - GA binding protein transcription factor subunit alpha [Source:ZFIN;Acc:ZDB-GENE-011010-2]
59. usb1 ENSDARG00000003841 524 0.876 - - - 0.876 - - - - - U6 snRNA biogenesis 1 [Source:ZFIN;Acc:ZDB-GENE-040801-197]
60. ttll7 ENSDARG00000062973 519 0.875 - 0.875 - - - - - - - tubulin tyrosine ligase-like family, member 7 [Source:ZFIN;Acc:ZDB-GENE-070112-2112]
61. tfcp2 ENSDARG00000060306 1024 0.873 - - - - - - 0.873 - - transcription factor CP2 [Source:ZFIN;Acc:ZDB-GENE-030131-2523]
62. wdr35 ENSDARG00000069269 492 0.872 - - - 0.872 - - - - - WD repeat domain 35 [Source:ZFIN;Acc:ZDB-GENE-060810-148]
63. igsf9b ENSDARG00000010408 786 0.87 - - - - - 0.870 - - - immunoglobulin superfamily, member 9b [Source:ZFIN;Acc:ZDB-GENE-060810-28]
64. PLEKHM3 ENSDARG00000030633 496 0.869 - 0.869 - - - - - - - pleckstrin homology domain containing, family M, member 3 [Source:ZFIN;Acc:ZDB-GENE-070912-382]
65. DHRS7C DHRS7C 363 0.869 - 0.869 - - - - - - -
66. CT955967.1 ENSDARG00000099956 2885 0.867 - - - - - - - - 0.867
67. ccdc120 ENSDARG00000032856, ENSDARG00000114382 808 0.865 - - - - - - 0.865 - - coiled-coil domain containing 120 [Source:ZFIN;Acc:ZDB-GENE-061027-93]
68. rbfa ENSDARG00000073705 601 0.865 - 0.865 - - - - - - - ribosome binding factor A [Source:ZFIN;Acc:ZDB-GENE-070410-83]
69. scamp5 scamp5 797 0.859 - - - - - 0.859 - - -
70. tmem184c ENSDARG00000078789, ENSDARG00000111570 395 0.858 - - - 0.858 - - - - - transmembrane protein 184C [Source:ZFIN;Acc:ZDB-GENE-090312-89]
71. prkacab ENSDARG00000016809 1441 0.858 - - - - - - 0.858 - - protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b [Source:ZFIN;Acc:ZDB-GENE-040801-208]
72. smad3b ENSDARG00000010207 951 0.855 - - - 0.855 - - - - - SMAD family member 3b [Source:ZFIN;Acc:ZDB-GENE-030128-4]
73. si:ch211-250c4.3 si:ch211-250c4.3 677 0.855 - - - - - - 0.855 - -
74. prom2 ENSDARG00000039406 278 0.854 - - - - - - 0.854 - - prominin 2 [Source:ZFIN;Acc:ZDB-GENE-080723-16]
75. ncapg2 ENSDARG00000060023 993 0.854 - - - - - 0.854 - - - non-SMC condensin II complex, subunit G2 [Source:ZFIN;Acc:ZDB-GENE-070410-100]
76. si:dkey-52l6.2 si:dkey-52l6.2 384 0.853 - - - 0.853 - - - - -
77. robo1 ENSDARG00000026784 125 0.853 - - - - - - - - 0.853 roundabout, axon guidance receptor, homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-000209-3]
78. h2afva ENSDARG00000068820 16427 0.852 - - - - - 0.852 - - - H2A histone family, member Va [Source:ZFIN;Acc:ZDB-GENE-020717-1]
79. dot1l ENSDARG00000061992 602 0.852 - - - 0.852 - - - - - DOT1-like histone H3K79 methyltransferase [Source:ZFIN;Acc:ZDB-GENE-060503-341]
80. phip ENSDARG00000015970 1080 0.851 - - - - - - 0.851 - - pleckstrin homology domain interacting protein [Source:ZFIN;Acc:ZDB-GENE-050208-261]
81. aatka ENSDARG00000078222 218 0.851 - - - - - - 0.851 - - apoptosis-associated tyrosine kinase a [Source:ZFIN;Acc:ZDB-GENE-100812-4]
82. gadd45aa ENSDARG00000043581 114 0.85 - - - - - - 0.850 - - growth arrest and DNA-damage-inducible, alpha, a [Source:ZFIN;Acc:ZDB-GENE-040426-1501]
83. pnkd ENSDARG00000071032 447 0.849 - - - - - - 0.849 - - PNKD, MBL domain containing [Source:ZFIN;Acc:ZDB-GENE-050208-278]
84. bcap29 ENSDARG00000016231 299 0.848 - - - - - - 0.848 - - B cell receptor associated protein 29 [Source:ZFIN;Acc:ZDB-GENE-050522-468]
85. HAUS2 HAUS2 392 0.847 - 0.847 - - - - - - -
86. ssbp1 ENSDARG00000039350 809 0.847 - 0.847 - - - - - - - single-stranded DNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050417-340]
87. casp2 ENSDARG00000062052 559 0.846 - - - - - - 0.846 - - caspase 2, apoptosis-related cysteine peptidase [Source:ZFIN;Acc:ZDB-GENE-030825-3]
88. muc13a ENSDARG00000069559 985 0.845 - - - - - - 0.845 - - mucin 13a, cell surface associated [Source:ZFIN;Acc:ZDB-GENE-061207-26]
89. haus5 ENSDARG00000019156 681 0.845 - - - - - - - - 0.845 HAUS augmin-like complex, subunit 5 [Source:ZFIN;Acc:ZDB-GENE-041114-150]
90. dlc ENSDARG00000002336, ENSDARG00000116332 578 0.845 - - - 0.845 - - - - - deltaC [Source:ZFIN;Acc:ZDB-GENE-000125-4]
91. ikbkb ENSDARG00000079123 498 0.845 - - - - - - 0.845 - - inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta [Source:ZFIN;Acc:ZDB-GENE-071115-2]
92. zgc:92242 ENSDARG00000029443 367 0.844 - - - 0.844 - - - - - zgc:92242 [Source:ZFIN;Acc:ZDB-GENE-040718-371]
93. twist2 ENSDARG00000078266 499 0.844 - 0.844 - - - - - - - twist2 [Source:ZFIN;Acc:ZDB-GENE-980526-235]
94. pane1 ENSDARG00000024681 866 0.844 - - - - - - 0.844 - - proliferation associated nuclear element [Source:ZFIN;Acc:ZDB-GENE-040611-4]
95. tmem169 tmem169 592 0.843 - - - - - 0.843 - - -
96. pomgnt1 ENSDARG00000052025, ENSDARG00000111516 983 0.843 - - - - - - 0.843 - - protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) [Source:ZFIN;Acc:ZDB-GENE-070112-991]
97. exosc7 ENSDARG00000100060 190 0.842 - - - 0.842 - - - - - exosome component 7 [Source:ZFIN;Acc:ZDB-GENE-050417-47]
98. VGLL3 ENSDARG00000038305 242 0.842 - 0.842 - - - - - - - vestigial-like family member 3 [Source:ZFIN;Acc:ZDB-GENE-130530-600]
99. e2f7 ENSDARG00000008986 1439 0.842 - - - - - - 0.842 - - E2F transcription factor 7 [Source:ZFIN;Acc:ZDB-GENE-030131-3527]
100. DBNDD2 DBNDD2 216 0.842 - 0.842 - - - - - - -

There are 932 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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