Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for usp1

Gene Name Gene ID Reads Annotation
usp1 ENSDARG00000056414 1816 ubiquitin specific peptidase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-726]










Genes with expression patterns similar to usp1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. usp1 ENSDARG00000056414 1816 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ubiquitin specific peptidase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-726]
2. ldb1a ENSDARG00000010137 3035 3.13 - 0.896 0.708 0.785 - - 0.741 - - LIM domain binding 1a [Source:ZFIN;Acc:ZDB-GENE-990415-138]
3. CR548630.1 CR548630.1 3301 3.105 0.738 0.923 0.710 0.734 - - - - -
4. prelid1b ENSDARG00000044169 501 2.614 - 0.827 - - - 0.814 - 0.973 - PRELI domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-050522-169]
5. pdcd10b ENSDARG00000012591 3395 2.505 - - - 0.774 - 0.771 - 0.960 - programmed cell death 10b [Source:ZFIN;Acc:ZDB-GENE-040426-2607]
6. mkrn4 ENSDARG00000028295 2768 2.486 - - 0.942 - - 0.720 0.824 - - makorin, ring finger protein, 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5954]
7. hcfc1b ENSDARG00000012519 3633 2.434 - - - 0.708 - 0.790 - 0.936 - host cell factor C1b [Source:ZFIN;Acc:ZDB-GENE-030131-2411]
8. znf710a ENSDARG00000014680 582 2.358 - 0.786 - 0.767 - 0.805 - - - zinc finger protein 710a [Source:ZFIN;Acc:ZDB-GENE-030131-5559]
9. znf292a ENSDARG00000016763 2253 2.355 - - 0.703 - - - - 0.946 0.706 zinc finger protein 292a [Source:ZFIN;Acc:ZDB-GENE-071004-18]
10. PARD3B PARD3B 401 2.316 - 0.841 - 0.773 - 0.702 - - -
11. sf3b3_1 ENSDARG00000103553 1191 2.277 - 0.752 - - - 0.794 0.731 - - splicing factor 3b, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2901]
12. uchl5 ENSDARG00000103404, ENSDARG00000110434 4029 2.238 - 0.808 - 0.714 - - - - 0.716 ubiquitin carboxyl-terminal hydrolase L5 [Source:ZFIN;Acc:ZDB-GENE-040426-2051]
13. sephs1 ENSDARG00000058292 3347 2.2 - - - 0.787 0.713 - 0.700 - - selenophosphate synthetase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3670]
14. slc30a9 ENSDARG00000057272 766 1.861 - 0.891 - - - - - 0.970 - solute carrier family 30 (zinc transporter), member 9 [Source:ZFIN;Acc:ZDB-GENE-040724-254]
15. COL4A3BP COL4A3BP 3288 1.856 - 0.880 0.976 - - - - - -
16. ncapd3 ENSDARG00000034773, ENSDARG00000111405 823 1.852 - 0.879 - - - - - 0.973 - non-SMC condensin II complex, subunit D3 [Source:ZFIN;Acc:ZDB-GENE-040426-737]
17. stox2a ENSDARG00000070162 1620 1.817 - - - - - 0.860 - 0.957 - storkhead box 2a [Source:ZFIN;Acc:ZDB-GENE-090313-101]
18. ilf3a ENSDARG00000058660, ENSDARG00000116860 3760 1.815 - 0.859 - - - - - 0.956 - interleukin enhancer binding factor 3a [Source:ZFIN;Acc:ZDB-GENE-030131-3151]
19. DTX4 ENSDARG00000076302 2642 1.797 - - 0.989 - - 0.808 - - - deltex E3 ubiquitin ligase 4 [Source:HGNC Symbol;Acc:HGNC:29151]
20. coro7 ENSDARG00000089616 2141 1.796 - 0.876 - - - - - 0.920 - coronin 7 [Source:ZFIN;Acc:ZDB-GENE-050706-137]
21. MAN2A2 ENSDARG00000063101 922 1.792 - - - - - 0.854 - 0.938 - mannosidase, alpha, class 2A, member 2 [Source:ZFIN;Acc:ZDB-GENE-110331-1]
22. MARK4 ENSDARG00000024966 3377 1.766 - - - - - - 0.821 0.945 - microtubule affinity regulating kinase 4 [Source:HGNC Symbol;Acc:HGNC:13538]
23. zic2a ENSDARG00000015554 2860 1.746 - - 0.930 - - - - 0.816 - zic family member 2 (odd-paired homolog, Drosophila), a [Source:ZFIN;Acc:ZDB-GENE-000710-4]
24. gatad2ab ENSDARG00000006192 2461 1.745 - - - 0.764 - - - 0.981 - GATA zinc finger domain containing 2Ab [Source:ZFIN;Acc:ZDB-GENE-040426-2372]
25. rdh12 ENSDARG00000018069 396 1.745 - - - - - 0.775 - 0.970 - retinol dehydrogenase 12 [Source:ZFIN;Acc:ZDB-GENE-040718-9]
26. NAIF1 ENSDARG00000062753 696 1.739 - 0.856 - - - - 0.883 - - nuclear apoptosis inducing factor 1 [Source:ZFIN;Acc:ZDB-GENE-081104-236]
27. epha7 ENSDARG00000004635, ENSDARG00000112305 1373 1.735 - - - 0.774 - - - 0.961 - eph receptor A7 [Source:ZFIN;Acc:ZDB-GENE-030131-3745]
28. aldh7a1 ENSDARG00000018426 4637 1.73 - 0.782 - - - - - 0.948 - aldehyde dehydrogenase 7 family, member A1 [Source:ZFIN;Acc:ZDB-GENE-030131-6129]
29. clic1 ENSDARG00000103340 2235 1.729 - 0.767 - - - - - 0.962 - chloride intracellular channel 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3202]
30. pcnp ENSDARG00000037713 2754 1.729 - 0.795 - - - - - 0.934 - PEST proteolytic signal containing nuclear protein [Source:ZFIN;Acc:ZDB-GENE-041010-130]
31. cxxc1l cxxc1l 1035 1.724 - - - 0.751 - - - 0.973 -
32. slit1a ENSDARG00000044954 3810 1.721 - 0.836 - - - - - 0.885 - slit homolog 1a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030722-3]
33. peli1b ENSDARG00000044083, ENSDARG00000112797 3801 1.706 - - - 0.792 - - - 0.914 - pellino E3 ubiquitin protein ligase 1b [Source:ZFIN;Acc:ZDB-GENE-061027-372]
34. st6gal2 st6gal2 1570 1.705 - - - - - 0.730 - 0.975 -
35. rac3b ENSDARG00000020795 1523 1.702 - 0.915 - 0.787 - - - - - Rac family small GTPase 3b [Source:ZFIN;Acc:ZDB-GENE-080220-21]
36. paxip1 ENSDARG00000005606 1417 1.702 - - 0.728 - - - - 0.974 - PAX interacting (with transcription-activation domain) protein 1 [Source:ZFIN;Acc:ZDB-GENE-041010-214]
37. tm9sf3 ENSDARG00000028748, ENSDARG00000111288 4546 1.7 - 0.777 - - - - - 0.923 - transmembrane 9 superfamily member 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2714]
38. G3BP2_1 G3BP2_1 2390 1.699 - - - 0.808 - - - 0.891 -
39. sppl2 ENSDARG00000030448 1040 1.69 - 0.861 - - - 0.829 - - - signal peptide peptidase-like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4265]
40. bub1bb ENSDARG00000074927 1667 1.69 - 0.848 - 0.842 - - - - - BUB1 mitotic checkpoint serine/threonine kinase Bb [Source:ZFIN;Acc:ZDB-GENE-030829-51]
41. fam96b 2255 1.69 - - - - - 0.716 - 0.974 - family with sequence similarity 96, member B
42. zzz3 ENSDARG00000077581 1343 1.69 - 0.836 - 0.854 - - - - - zinc finger, ZZ-type containing 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6450]
43. yy1b ENSDARG00000027978 2669 1.686 - - 0.712 - - - - 0.974 - YY1 transcription factor b [Source:ZFIN;Acc:ZDB-GENE-040426-2127]
44. paqr3a ENSDARG00000017703, ENSDARG00000117061 2018 1.686 - - - - - - - 0.981 0.705 progestin and adipoQ receptor family member IIIa [Source:ZFIN;Acc:ZDB-GENE-040426-1667]
45. hsd17b4 ENSDARG00000101239 301 1.685 - - - - - - 0.714 0.971 - hydroxysteroid (17-beta) dehydrogenase 4 [Source:ZFIN;Acc:ZDB-GENE-040421-1]
46. slc7a6os ENSDARG00000010596 1599 1.685 - - - - - 0.746 - 0.939 - solute carrier family 7, member 6 opposite strand [Source:ZFIN;Acc:ZDB-GENE-041114-32]
47. arpc5a ENSDARG00000039142 5482 1.683 - - - - - - 0.729 0.954 - actin related protein 2/3 complex, subunit 5A [Source:ZFIN;Acc:ZDB-GENE-030131-8448]
48. cuedc1b ENSDARG00000054748 1638 1.68 - - - 0.757 - - - 0.923 - CUE domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-070424-29]
49. rgs12b ENSDARG00000036774 5088 1.67 - - - - - 0.709 - 0.961 - regulator of G protein signaling 12b [Source:ZFIN;Acc:ZDB-GENE-031006-13]
50. map3k1 ENSDARG00000098405 3043 1.666 - - - - - 0.752 - 0.914 - mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-090313-412]
51. ptena ENSDARG00000071018, ENSDARG00000114986, ENSDARG00000115966 6610 1.663 - - 0.916 0.747 - - - - - phosphatase and tensin homolog A [Source:ZFIN;Acc:ZDB-GENE-030131-3776]
52. fam43a ENSDARG00000043009 792 1.662 - 0.888 - - - - 0.774 - - family with sequence similarity 43, member A [Source:ZFIN;Acc:ZDB-GENE-030131-6098]
53. AIFM2 ENSDARG00000077549 1419 1.662 - - - - - 0.710 - 0.952 - apoptosis-inducing factor, mitochondrion-associated, 2 [Source:ZFIN;Acc:ZDB-GENE-050506-76]
54. ADCY3 ADCY3 537 1.658 - - - 0.721 - - - 0.937 -
55. ptgs2a ENSDARG00000004539 1207 1.655 - 0.846 - - - 0.809 - - - prostaglandin-endoperoxide synthase 2a [Source:ZFIN;Acc:ZDB-GENE-020530-2]
56. atp6v1h ENSDARG00000006370 7028 1.654 - - - - - - 0.745 0.909 - ATPase H+ transporting V1 subunit H [Source:ZFIN;Acc:ZDB-GENE-021219-2]
57. WAPAL WAPAL 1888 1.65 - 0.833 - 0.817 - - - - -
58. lmbrd1 ENSDARG00000104223 924 1.65 - - - - - 0.878 0.772 - - LMBR1 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041212-36]
59. igfbp1a ENSDARG00000099351 1717 1.644 - - - - - 0.712 - 0.932 - insulin-like growth factor binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-021231-1]
60. insrb ENSDARG00000071524 1820 1.641 - 0.894 - 0.747 - - - - - insulin receptor b [Source:ZFIN;Acc:ZDB-GENE-020503-4]
61. ZNF281 ZNF281 1946 1.64 - 0.845 - 0.795 - - - - -
62. ca16b ENSDARG00000060123 389 1.632 - 0.861 - - - 0.771 - - - carbonic anhydrase XVI b [Source:ZFIN;Acc:ZDB-GENE-080818-1]
63. ENSDARG00000074705 ENSDARG00000074705 507 1.629 - 0.824 - - - 0.805 - - -
64. elmod2 ENSDARG00000101669 3101 1.621 - - - - - 0.841 0.780 - - ELMO/CED-12 domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-060824-2]
65. atp6ap1a ENSDARG00000041417 898 1.621 - - - 0.827 - 0.794 - - - ATPase H+ transporting accessory protein 1a [Source:ZFIN;Acc:ZDB-GENE-090312-136]
66. tdrd3 ENSDARG00000025421 633 1.621 - 0.872 - 0.749 - - - - - tudor domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-040426-19]
67. cxxc1 cxxc1 914 1.62 - 0.857 - 0.763 - - - - -
68. CDCA4 ENSDARG00000042319 7918 1.619 - - - 0.798 - 0.821 - - - cell division cycle associated 4 [Source:ZFIN;Acc:ZDB-GENE-030131-1695]
69. KCTD14 ENSDARG00000110240 122 1.616 - 0.818 - - - 0.798 - - - potassium channel tetramerization domain containing 14 [Source:ZFIN;Acc:ZDB-GENE-120215-239]
70. si:ch73-138e16.8 175 1.614 - 0.874 - - - - 0.740 - - si:ch73-138e16.8
71. zic5 ENSDARG00000016022 1034 1.614 - 0.848 - - - 0.766 - - - zic family member 5 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040622-1]
72. casc3 ENSDARG00000029911 1174 1.611 - 0.856 - - - 0.755 - - - casc3, exon junction complex subunit [Source:ZFIN;Acc:ZDB-GENE-040308-2]
73. ankfy1 ENSDARG00000061013, ENSDARG00000111387 952 1.611 - - - - - 0.770 0.841 - - ankyrin repeat and FYVE domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041222-1]
74. pcnxl4 377 1.609 - 0.894 - - - 0.715 - - - pecanex-like 4 (Drosophila), transcript variant X2
75. nme6 ENSDARG00000016138 207 1.608 - 0.875 - - - 0.733 - - - NME/NM23 nucleoside diphosphate kinase 6 [Source:ZFIN;Acc:ZDB-GENE-000710-3]
76. smn1 ENSDARG00000018494 1024 1.605 - 0.833 - 0.772 - - - - - survival of motor neuron 1, telomeric [Source:ZFIN;Acc:ZDB-GENE-990715-16]
77. mpv17l2 ENSDARG00000056367, ENSDARG00000112107 352 1.603 - 0.894 - - - - 0.709 - - MPV17 mitochondrial membrane protein-like 2 [Source:ZFIN;Acc:ZDB-GENE-040718-306]
78. cacybp ENSDARG00000014731 2650 1.6 - - - 0.723 - - 0.877 - - calcyclin binding protein [Source:ZFIN;Acc:ZDB-GENE-040426-2579]
79. tmem30ab ENSDARG00000043555 1344 1.599 - - - 0.751 - - 0.848 - - transmembrane protein 30Ab [Source:ZFIN;Acc:ZDB-GENE-030131-5884]
80. galnt2 ENSDARG00000003829 891 1.598 - - - 0.741 - 0.857 - - - UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-041111-110]
81. lyrm1 ENSDARG00000026281 303 1.595 - 0.878 - - - - 0.717 - - LYR motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-040718-210]
82. nuf2 ENSDARG00000034624 2252 1.594 - 0.768 - 0.826 - - - - - NUF2, NDC80 kinetochore complex component, homolog [Source:ZFIN;Acc:ZDB-GENE-040426-1121]
83. zdhhc6 ENSDARG00000075721 1494 1.591 - 0.882 - 0.709 - - - - - zinc finger, DHHC-type containing 6 [Source:ZFIN;Acc:ZDB-GENE-030131-3189]
84. unc119b ENSDARG00000044362 1528 1.589 - - - 0.823 - 0.766 - - - unc-119 homolog b (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-050201-2]
85. usp5 ENSDARG00000014517, ENSDARG00000114598 1969 1.588 - 0.885 - - - - 0.703 - - ubiquitin specific peptidase 5 (isopeptidase T) [Source:ZFIN;Acc:ZDB-GENE-040426-2584]
86. ARFGAP1 ENSDARG00000101616 2952 1.588 - 0.812 - - - 0.776 - - - ADP-ribosylation factor GTPase activating protein 1 [Source:ZFIN;Acc:ZDB-GENE-041114-130]
87. fignl1 ENSDARG00000016427 636 1.584 - - 0.732 - - 0.852 - - - fidgetin-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1862]
88. dnmt3 dnmt3 1912 1.577 - - - 0.756 - 0.821 - - -
89. smc2 ENSDARG00000017744, ENSDARG00000114076 2271 1.574 - - - 0.873 - - - - 0.701 structural maintenance of chromosomes 2 [Source:ZFIN;Acc:ZDB-GENE-030131-105]
90. pycr1 pycr1 1258 1.572 - - 0.730 - - 0.842 - - -
91. zc2hc1a ENSDARG00000027915, ENSDARG00000112745 974 1.569 - - - - - 0.809 0.760 - - zinc finger, C2HC-type containing 1A [Source:ZFIN;Acc:ZDB-GENE-030131-3132]
92. ddx39aa ENSDARG00000006225, ENSDARG00000116665 6675 1.567 - - - - - - 0.721 0.846 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa [Source:ZFIN;Acc:ZDB-GENE-030131-4275]
93. NRBP2 NRBP2 127 1.567 - 0.847 - - - 0.720 - - -
94. e2f8 ENSDARG00000057323 1432 1.565 - 0.861 - - - 0.704 - - - E2F transcription factor 8 [Source:ZFIN;Acc:ZDB-GENE-041111-260]
95. eif4g2a ENSDARG00000020377, ENSDARG00000112658 6895 1.565 - - - - - 0.709 - 0.856 - eukaryotic translation initiation factor 4, gamma 2a [Source:ZFIN;Acc:ZDB-GENE-030131-2173]
96. mdkb ENSDARG00000020708 5393 1.565 - - - 0.858 - 0.707 - - - midkine b [Source:ZFIN;Acc:ZDB-GENE-010131-6]
97. TMEM185A TMEM185A 5505 1.561 - - - 0.744 - 0.817 - - -
98. CLIP3 ENSDARG00000054456 734 1.558 - - - 0.758 - 0.800 - - - CAP-GLY domain containing linker protein 3 [Source:ZFIN;Acc:ZDB-GENE-131127-193]
99. lrrfip2 ENSDARG00000010400 2633 1.556 - 0.819 - - - 0.737 - - - leucine rich repeat (in FLII) interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7781]
100. loh12cr1 loh12cr1 346 1.555 - - - - - 0.848 0.707 - -

There are 2340 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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