Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for ush1c

Gene Name Gene ID Reads Annotation
ush1c ENSDARG00000051876, ENSDARG00000112799 25 Usher syndrome 1C [Source:ZFIN;Acc:ZDB-GENE-060312-41]










Genes with expression patterns similar to ush1c

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ush1c ENSDARG00000051876, ENSDARG00000112799 25 8 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 1.000 Usher syndrome 1C [Source:ZFIN;Acc:ZDB-GENE-060312-41]
2. si:ch211-161h7.8 ENSDARG00000089919 60 2.582 1.000 0.705 - - - 0.877 - - - si:ch211-161h7.8 [Source:ZFIN;Acc:ZDB-GENE-091204-302]
3. SLC7A8 SLC7A8 25 1.969 1.000 - - - - 0.969 - - -
4. igfbp5a ENSDARG00000039264, ENSDARG00000111203 117 1.938 1.000 - - - - 0.938 - - - insulin-like growth factor binding protein 5a [Source:ZFIN;Acc:ZDB-GENE-070620-8]
5. SORT1 SORT1 33 1.885 0.986 - - - - 0.899 - - -
6. stx11b.2 ENSDARG00000042231, ENSDARG00000110079 68 1.844 0.866 - - - - 0.978 - - - syntaxin 11b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-050417-148]
7. dhrs3a ENSDARG00000044982, ENSDARG00000109521 146 1.778 0.825 - - - - 0.953 - - - dehydrogenase/reductase (SDR family) member 3a [Source:ZFIN;Acc:ZDB-GENE-040801-217]
8. SERTAD4 ENSDARG00000089795 791 1.741 0.913 - - - - 0.828 - - - SERTA domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-090313-199]
9. si:dkey-262g12.4 si:dkey-262g12.4 144 1.736 0.963 - - - - 0.773 - - -
10. pik3cg ENSDARG00000017757 157 1.733 0.981 0.752 - - - - - - - phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma [Source:ZFIN;Acc:ZDB-GENE-040426-2532]
11. rorcb ENSDARG00000017780 233 1.673 0.917 - - - - 0.756 - - - RAR-related orphan receptor C b [Source:ZFIN;Acc:ZDB-GENE-040724-215]
12. cnga3a ENSDARG00000070726 8 1.668 - 0.705 - - - 0.963 - - - cyclic nucleotide gated channel alpha 3a [Source:ZFIN;Acc:ZDB-GENE-090611-2]
13. POLQ ENSDARG00000044622, ENSDARG00000110374 94 1.652 - 0.777 - - - 0.875 - - - polymerase (DNA directed), theta [Source:ZFIN;Acc:ZDB-GENE-040724-232]
14. zgc:154075 ENSDARG00000067630 284 1.647 0.889 - - - - 0.758 - - - zgc:154075 [Source:ZFIN;Acc:ZDB-GENE-060929-910]
15. cysltr1 ENSDARG00000058246, ENSDARG00000116295 25 1.646 - - 0.774 - - 0.872 - - - cysteinyl leukotriene receptor 1 [Source:ZFIN;Acc:ZDB-GENE-050522-250]
16. si:ch211-10m5.3 si:ch211-10m5.3 10 1.646 - 0.705 - - - 0.941 - - -
17. USP2 USP2 157 1.596 - - - - 0.806 0.790 - - -
18. C12H10orf107 C12H10orf107 8 1.591 - 0.705 - - 0.886 - - - -
19. dysf ENSDARG00000007370 125 1.588 0.777 - - - - 0.811 - - - dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive) [Source:ZFIN;Acc:ZDB-GENE-070501-1]
20. si:ch211-238n5.4 ENSDARG00000062381, ENSDARG00000112239 286 1.585 0.765 - - - - 0.820 - - - si:ch211-238n5.4 [Source:ZFIN;Acc:ZDB-GENE-050419-80]
21. DTX4_1 ENSDARG00000076302 31 1.584 0.879 0.705 - - - - - - - deltex E3 ubiquitin ligase 4 [Source:HGNC Symbol;Acc:HGNC:29151]
22. nsmce4a ENSDARG00000024311 125 1.564 0.859 0.705 - - - - - - - NSE4 homolog A, SMC5-SMC6 complex component [Source:ZFIN;Acc:ZDB-GENE-050522-111]
23. stx3a ENSDARG00000001880 69 1.519 - - 0.760 - - 0.759 - - - syntaxin 3A [Source:ZFIN;Acc:ZDB-GENE-040426-1489]
24. CU693477.1 CU693477.1 7 1.511 - 0.705 - - 0.806 - - - -
25. lifrb ENSDARG00000039863 102 1.452 - 0.751 - - - 0.701 - - - leukemia inhibitory factor receptor alpha b [Source:ZFIN;Acc:ZDB-GENE-080107-2]
26. si:dkey-34m19.3 ENSDARG00000078814 321 1.449 0.704 - - - - 0.745 - - - si:dkey-34m19.3 [Source:ZFIN;Acc:ZDB-GENE-030131-2206]
27. CABZ01059408.1 ENSDARG00000116928 24 1 1.000 - - - - - - - -
28. neurod6b ENSDARG00000020794 164 1 - - - - - 1.000 - - - neuronal differentiation 6b [Source:ZFIN;Acc:ZDB-GENE-010608-2]
29. BX004785.2 ENSDARG00000093487 10 1 - - - - - 1.000 - - -
30. trpc2 trpc2 10 1 - - - - - 1.000 - - -
31. ptger1b ENSDARG00000104847 91 1 1.000 - - - - - - - - prostaglandin E receptor 1b (subtype EP1) [Source:ZFIN;Acc:ZDB-GENE-100922-278]
32. CT583679.1 CT583679.1 11 1 - - - - - 1.000 - - -
33. itln3 ENSDARG00000003523 3 1 - - - - - 1.000 - - - intelectin 3 [Source:ZFIN;Acc:ZDB-GENE-090527-4]
34. abhd6b ENSDARG00000070894, ENSDARG00000111140 5 1 - - - - - 1.000 - - - abhydrolase domain containing 6b [Source:ZFIN;Acc:ZDB-GENE-070410-104]
35. scospondin ENSDARG00000067859 4 1 - - - - - 1.000 - - - subcommissural organ spondin [Source:ZFIN;Acc:ZDB-GENE-051114-1]
36. iffo1a ENSDARG00000062976 5 1 - - - - - 1.000 - - - intermediate filament family orphan 1a [Source:ZFIN;Acc:ZDB-GENE-060503-418]
37. ddhd1b ENSDARG00000037042, ENSDARG00000111543, ENSDARG00000113512 12 1 1.000 - - - - - - - - DDHD domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-040724-18]
38. si:dkeyp-9d4.2 ENSDARG00000029720 9 1 1.000 - - - - - - - - si:dkeyp-9d4.2 [Source:ZFIN;Acc:ZDB-GENE-090312-156]
39. si:dkeyp-52c3.1 3 1 - - - - 1.000 - - - - si:dkeyp-52c3.1, transcript variant X1
40. CR790363.1 ENSDARG00000097364 145 1 - - - - - 1.000 - - -
41. CR631122.1 ENSDARG00000044534 8 1 1.000 - - - - - - - - protein RD3-like [Source:NCBI gene;Acc:100149591]
42. si:dkey-94e7.2 ENSDARG00000068474 14 1 - - - - - 1.000 - - - si:dkey-94e7.2 [Source:ZFIN;Acc:ZDB-GENE-070912-611]
43. SDSL ENSDARG00000074698 34 1 - - - - - 1.000 - - - serine dehydratase-like [Source:ZFIN;Acc:ZDB-GENE-131121-410]
44. sybu ENSDARG00000060112 22 1 - - - - - 1.000 - - - syntabulin (syntaxin-interacting) [Source:ZFIN;Acc:ZDB-GENE-060929-1202]
45. CABZ01085657.1 CABZ01085657.1 23 1 - - - - - 1.000 - - -
46. CABZ01055343.1 CABZ01055343.1 12 1 1.000 - - - - - - - -
47. tmem196b ENSDARG00000090140 20 1 - - - - - 1.000 - - - transmembrane protein 196b [Source:ZFIN;Acc:ZDB-GENE-110914-248]
48. si:dkey-9i23.6 ENSDARG00000094678 58 1 - - - - - 1.000 - - - si:dkey-9i23.6 [Source:ZFIN;Acc:ZDB-GENE-090313-365]
49. Vault_1 Vault_1 6 1 1.000 - - - - - - - -
50. PLEKHG3 72 1 - - - - - 1.000 - - - pleckstrin homology and RhoGEF domain containing G3, transcript variant X5
51. ppa1a ENSDARG00000099933 31 1 1.000 - - - - - - - - pyrophosphatase (inorganic) 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1695]
52. CABZ01068324.1 CABZ01068324.1 4 1 1.000 - - - - - - - -
53. SLC1A7 SLC1A7 3 1 - - - - - 1.000 - - -
54. ZNF337_19 ZNF337_19 3 1 - - - - 1.000 - - - -
55. zgc:174696 ENSDARG00000110658 67 1 - - - - - 1.000 - - - zgc:174696 [Source:ZFIN;Acc:ZDB-GENE-030131-2836]
56. si:ch211-265m20.8 120 1 1.000 - - - - - - - - si:ch211-265m20.8, transcript variant X1
57. si:dkey-24p1.6 ENSDARG00000028784, ENSDARG00000097212 23 1 1.000 - - - - - - - - si:dkey-24p1.6 [Source:ZFIN;Acc:ZDB-GENE-060503-67]
58. zgc:173594 57 1 1.000 - - - - - - - - zgc:173594
59. rpn2 ENSDARG00000009724 322 1 - - - - - 1.000 - - - ribophorin II [Source:ZFIN;Acc:ZDB-GENE-030131-7928]
60. gabrr2b ENSDARG00000014057 9 1 - - - - - 1.000 - - - gamma-aminobutyric acid (GABA) A receptor, rho 2b [Source:ZFIN;Acc:ZDB-GENE-041014-174]
61. ptprua ENSDARG00000092638 479 1 - - - - - 1.000 - - - protein tyrosine phosphatase, receptor type, U, a [Source:ZFIN;Acc:ZDB-GENE-060503-232]
62. PLEKHS1_2 PLEKHS1_2 21 1 - - - - - 1.000 - - -
63. pcsk5a ENSDARG00000067537 44 1 1.000 - - - - - - - - proprotein convertase subtilisin/kexin type 5a [Source:ZFIN;Acc:ZDB-GENE-060531-130]
64. CU856140.1 CU856140.1 4316 1 1.000 - - - - - - - -
65. si:dkey-229d11.3 ENSDARG00000093255 41 1 - - - - - 1.000 - - - si:dkey-229d11.3 [Source:ZFIN;Acc:ZDB-GENE-091117-40]
66. si:dkey-47k20.8 ENSDARG00000035214 4 1 1.000 - - - - - - - - si:dkey-47k20.8 [Source:ZFIN;Acc:ZDB-GENE-060503-359]
67. atoh1c ENSDARG00000039602 4 1 1.000 - - - - - - - - atonal bHLH transcription factor 1c [Source:ZFIN;Acc:ZDB-GENE-090805-1]
68. CU694807.2 CU694807.2 5 1 1.000 - - - - - - - -
69. bend5 ENSDARG00000075624 10 1 - - - - - 1.000 - - - BEN domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-081104-460]
70. GABRA3 ENSDARG00000090883 5 1 - - - - 1.000 - - - - gamma-aminobutyric acid (GABA) A receptor, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-091204-365]
71. C3H17orf104 C3H17orf104 16 1 1.000 - - - - - - - -
72. pcdh2g8 2 1 - - - - 1.000 - - - - protocadherin 2 gamma 8
73. C11H3orf14 C11H3orf14 15 1 1.000 - - - - - - - -
74. si:ch211-212k5.2 si:ch211-212k5.2 152 1 - - - - - 1.000 - - -
75. 5_8S_rRNA 5_8S_rRNA 24 1 - - - - - 1.000 - - -
76. RBBP6_1 RBBP6_1 1 1 - - - - 1.000 - - - -
77. si:ch211-204c5.6 si:ch211-204c5.6 7 1 1.000 - - - - - - - -
78. trim62 ENSDARG00000060901 12 1 1.000 - - - - - - - - tripartite motif containing 62 [Source:ZFIN;Acc:ZDB-GENE-070112-502]
79. cd79b ENSDARG00000104691 5 1 1.000 - - - - - - - - CD79b molecule, immunoglobulin-associated beta [Source:ZFIN;Acc:ZDB-GENE-121219-1]
80. ccdc79 2 1 - - - - 1.000 - - - - coiled-coil domain containing 79
81. CABZ01118004.1 ENSDARG00000117218 2 1 - - - - - 1.000 - - -
82. SLC2A4RG SLC2A4RG 47 1 - - - - - 1.000 - - -
83. mxd ENSDARG00000023369 8 1 - - - - - 1.000 - - - myxovirus (influenza virus) resistance D [Source:ZFIN;Acc:ZDB-GENE-030721-8]
84. BX005085.3 ENSDARG00000103450 45 1 - - - - - 1.000 - - -
85. exoc4 ENSDARG00000004336 32 1 - - - - - 1.000 - - - exocyst complex component 4 [Source:ZFIN;Acc:ZDB-GENE-041210-112]
86. pde6c ENSDARG00000100397 49 1 - - - - - 1.000 - - - phosphodiesterase 6C, cGMP-specific, cone, alpha prime [Source:ZFIN;Acc:ZDB-GENE-040426-1664]
87. sowahaa ENSDARG00000077861 3 1 - - - - - 1.000 - - - sosondowah ankyrin repeat domain family member Aa [Source:ZFIN;Acc:ZDB-GENE-100910-3]
88. anxa2b ENSDARG00000053625, ENSDARG00000116775, ENSDARG00000117092 55 1 1.000 - - - - - - - - annexin A2b [Source:ZFIN;Acc:ZDB-GENE-030131-1089]
89. atoh1b ENSDARG00000099564 494 1 1.000 - - - - - - - - atonal bHLH transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-041201-1]
90. ssr1 ENSDARG00000101627 151 1 - - - - - 1.000 - - - signal sequence receptor, alpha [Source:ZFIN;Acc:ZDB-GENE-030826-28]
91. CABZ01092722.1 CABZ01092722.1 2 1 - - - - - 1.000 - - -
92. nkiras2_1 ENSDARG00000052594 31 1 - - - - - 1.000 - - - NFKB inhibitor interacting Ras-like 2 [Source:ZFIN;Acc:ZDB-GENE-040801-166]
93. prpf3_1 ENSDARG00000086425, ENSDARG00000116776 84 1 - - - - - 1.000 - - - PRP3 pre-mRNA processing factor 3 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040823-3]
94. pip5k1cb ENSDARG00000100313 3 1 - - - - - 1.000 - - - phosphatidylinositol-4-phosphate 5-kinase, type I, gamma b [Source:ZFIN;Acc:ZDB-GENE-110408-21]
95. 5S_rRNA_23 5S_rRNA_23 2 1 - - - - - 1.000 - - -
96. slc27a6 ENSDARG00000046053 57 1 - - - - - 1.000 - - - solute carrier family 27 (fatty acid transporter), member 6 [Source:ZFIN;Acc:ZDB-GENE-060825-27]
97. CR677591.1 CR677591.1 19 1 - - - - - 1.000 - - -
98. BX511271.1 BX511271.1 22 1 1.000 - - - - - - - -
99. cldn11a ENSDARG00000020031 284 1 1.000 - - - - - - - - claudin 11a [Source:ZFIN;Acc:ZDB-GENE-040718-369]
100. zzef1 ENSDARG00000094380 4 1 1.000 - - - - - - - - zinc finger, ZZ-type with EF hand domain 1 [Source:ZFIN;Acc:ZDB-GENE-041222-2]

There are 1167 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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