Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for ush1c

Gene Name Gene ID Reads Annotation
ush1c ENSDARG00000051876, ENSDARG00000112799 25 Usher syndrome 1C [Source:ZFIN;Acc:ZDB-GENE-060312-41]










Genes with expression patterns similar to ush1c

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ush1c ENSDARG00000051876, ENSDARG00000112799 25 8 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 1.000 Usher syndrome 1C [Source:ZFIN;Acc:ZDB-GENE-060312-41]
2. si:ch211-161h7.8 ENSDARG00000089919 60 2.582 1.000 0.705 - - - 0.877 - - - si:ch211-161h7.8 [Source:ZFIN;Acc:ZDB-GENE-091204-302]
3. SLC7A8 SLC7A8 25 1.969 1.000 - - - - 0.969 - - -
4. igfbp5a ENSDARG00000039264, ENSDARG00000111203 117 1.938 1.000 - - - - 0.938 - - - insulin-like growth factor binding protein 5a [Source:ZFIN;Acc:ZDB-GENE-070620-8]
5. SORT1 SORT1 33 1.885 0.986 - - - - 0.899 - - -
6. stx11b.2 ENSDARG00000042231, ENSDARG00000110079 68 1.844 0.866 - - - - 0.978 - - - syntaxin 11b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-050417-148]
7. dhrs3a ENSDARG00000044982, ENSDARG00000109521 146 1.778 0.825 - - - - 0.953 - - - dehydrogenase/reductase (SDR family) member 3a [Source:ZFIN;Acc:ZDB-GENE-040801-217]
8. SERTAD4 ENSDARG00000089795 791 1.741 0.913 - - - - 0.828 - - - SERTA domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-090313-199]
9. si:dkey-262g12.4 si:dkey-262g12.4 144 1.736 0.963 - - - - 0.773 - - -
10. pik3cg ENSDARG00000017757 157 1.733 0.981 0.752 - - - - - - - phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma [Source:ZFIN;Acc:ZDB-GENE-040426-2532]
11. rorcb ENSDARG00000017780 233 1.673 0.917 - - - - 0.756 - - - RAR-related orphan receptor C b [Source:ZFIN;Acc:ZDB-GENE-040724-215]
12. cnga3a ENSDARG00000070726 8 1.668 - 0.705 - - - 0.963 - - - cyclic nucleotide gated channel alpha 3a [Source:ZFIN;Acc:ZDB-GENE-090611-2]
13. POLQ ENSDARG00000044622, ENSDARG00000110374 94 1.652 - 0.777 - - - 0.875 - - - polymerase (DNA directed), theta [Source:ZFIN;Acc:ZDB-GENE-040724-232]
14. zgc:154075 ENSDARG00000067630 284 1.647 0.889 - - - - 0.758 - - - zgc:154075 [Source:ZFIN;Acc:ZDB-GENE-060929-910]
15. si:ch211-10m5.3 si:ch211-10m5.3 10 1.646 - 0.705 - - - 0.941 - - -
16. cysltr1 ENSDARG00000058246, ENSDARG00000116295 25 1.646 - - 0.774 - - 0.872 - - - cysteinyl leukotriene receptor 1 [Source:ZFIN;Acc:ZDB-GENE-050522-250]
17. USP2 USP2 157 1.596 - - - - 0.806 0.790 - - -
18. C12H10orf107 C12H10orf107 8 1.591 - 0.705 - - 0.886 - - - -
19. dysf ENSDARG00000007370 125 1.588 0.777 - - - - 0.811 - - - dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive) [Source:ZFIN;Acc:ZDB-GENE-070501-1]
20. si:ch211-238n5.4 ENSDARG00000062381, ENSDARG00000112239 286 1.585 0.765 - - - - 0.820 - - - si:ch211-238n5.4 [Source:ZFIN;Acc:ZDB-GENE-050419-80]
21. DTX4_1 ENSDARG00000076302 31 1.584 0.879 0.705 - - - - - - - deltex E3 ubiquitin ligase 4 [Source:HGNC Symbol;Acc:HGNC:29151]
22. nsmce4a ENSDARG00000024311 125 1.564 0.859 0.705 - - - - - - - NSE4 homolog A, SMC5-SMC6 complex component [Source:ZFIN;Acc:ZDB-GENE-050522-111]
23. stx3a ENSDARG00000001880 69 1.519 - - 0.760 - - 0.759 - - - syntaxin 3A [Source:ZFIN;Acc:ZDB-GENE-040426-1489]
24. CU693477.1 CU693477.1 7 1.511 - 0.705 - - 0.806 - - - -
25. lifrb ENSDARG00000039863 102 1.452 - 0.751 - - - 0.701 - - - leukemia inhibitory factor receptor alpha b [Source:ZFIN;Acc:ZDB-GENE-080107-2]
26. si:dkey-34m19.3 ENSDARG00000078814 321 1.449 0.704 - - - - 0.745 - - - si:dkey-34m19.3 [Source:ZFIN;Acc:ZDB-GENE-030131-2206]
27. zzef1 ENSDARG00000094380 4 1 1.000 - - - - - - - - zinc finger, ZZ-type with EF hand domain 1 [Source:ZFIN;Acc:ZDB-GENE-041222-2]
28. cldn11a ENSDARG00000020031 284 1 1.000 - - - - - - - - claudin 11a [Source:ZFIN;Acc:ZDB-GENE-040718-369]
29. CABZ01060296.1 CABZ01060296.1 9 1 1.000 - - - - - - - -
30. 5S_rRNA_23 5S_rRNA_23 2 1 - - - - - 1.000 - - -
31. nkiras2_1 ENSDARG00000052594 31 1 - - - - - 1.000 - - - NFKB inhibitor interacting Ras-like 2 [Source:ZFIN;Acc:ZDB-GENE-040801-166]
32. prpf3_1 ENSDARG00000086425, ENSDARG00000116776 84 1 - - - - - 1.000 - - - PRP3 pre-mRNA processing factor 3 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040823-3]
33. pip5k1cb ENSDARG00000100313 3 1 - - - - - 1.000 - - - phosphatidylinositol-4-phosphate 5-kinase, type I, gamma b [Source:ZFIN;Acc:ZDB-GENE-110408-21]
34. BX511271.1 BX511271.1 22 1 1.000 - - - - - - - -
35. CR677591.1 CR677591.1 19 1 - - - - - 1.000 - - -
36. slc27a6 ENSDARG00000046053 57 1 - - - - - 1.000 - - - solute carrier family 27 (fatty acid transporter), member 6 [Source:ZFIN;Acc:ZDB-GENE-060825-27]
37. ssr1 ENSDARG00000101627 151 1 - - - - - 1.000 - - - signal sequence receptor, alpha [Source:ZFIN;Acc:ZDB-GENE-030826-28]
38. CABZ01092722.1 CABZ01092722.1 2 1 - - - - - 1.000 - - -
39. atoh1b ENSDARG00000099564 494 1 1.000 - - - - - - - - atonal bHLH transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-041201-1]
40. sowahaa ENSDARG00000077861 3 1 - - - - - 1.000 - - - sosondowah ankyrin repeat domain family member Aa [Source:ZFIN;Acc:ZDB-GENE-100910-3]
41. anxa2b ENSDARG00000053625, ENSDARG00000116775, ENSDARG00000117092 55 1 1.000 - - - - - - - - annexin A2b [Source:ZFIN;Acc:ZDB-GENE-030131-1089]
42. exoc4 ENSDARG00000004336 32 1 - - - - - 1.000 - - - exocyst complex component 4 [Source:ZFIN;Acc:ZDB-GENE-041210-112]
43. BX005085.3 ENSDARG00000103450 45 1 - - - - - 1.000 - - -
44. mxd ENSDARG00000023369 8 1 - - - - - 1.000 - - - myxovirus (influenza virus) resistance D [Source:ZFIN;Acc:ZDB-GENE-030721-8]
45. SLC2A4RG SLC2A4RG 47 1 - - - - - 1.000 - - -
46. pde6c ENSDARG00000100397 49 1 - - - - - 1.000 - - - phosphodiesterase 6C, cGMP-specific, cone, alpha prime [Source:ZFIN;Acc:ZDB-GENE-040426-1664]
47. si:ch211-215m21.11 si:ch211-215m21.11 2 1 - - - - - 1.000 - - -
48. prdm2a ENSDARG00000090721 11 1 - - - - - 1.000 - - - PR domain containing 2, with ZNF domain a [Source:ZFIN;Acc:ZDB-GENE-081104-139]
49. entpd8 ENSDARG00000005565 18 1 1.000 - - - - - - - - ectonucleoside triphosphate diphosphohydrolase 8 [Source:ZFIN;Acc:ZDB-GENE-040724-142]
50. si:ch73-91k6.1 18 1 1.000 - - - - - - - - si:ch73-91k6.1
51. 5S_rRNA_15 5S_rRNA_15 9 1 - - - - 1.000 - - - -
52. foxp3a ENSDARG00000055750 15 1 1.000 - - - - - - - - forkhead box P3a [Source:ZFIN;Acc:ZDB-GENE-061116-2]
53. BX649415.1 BX649415.1 5 1 - - - - - 1.000 - - -
54. zgc:172133 ENSDARG00000075248 6 1 1.000 - - - - - - - - zgc:172133 [Source:ZFIN;Acc:ZDB-GENE-080204-48]
55. pde11al ENSDARG00000006151 70 1 - - - - - 1.000 - - - phosphodiesterase 11a, like [Source:ZFIN;Acc:ZDB-GENE-031118-106]
56. C11H1orf116 C11H1orf116 9 1 - - - - - 1.000 - - -
57. si:rp71-1h20.5 ENSDARG00000098176 3 1 - - - - - 1.000 - - - si:rp71-1h20.5 [Source:ZFIN;Acc:ZDB-GENE-030131-7869]
58. urgcp ENSDARG00000036767 6 1 1.000 - - - - - - - - upregulator of cell proliferation [Source:ZFIN;Acc:ZDB-GENE-120215-160]
59. sema4ga ENSDARG00000076595 24 1 1.000 - - - - - - - - sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ga [Source:ZFIN;Acc:ZDB-GENE-060503-381]
60. avpr2aa ENSDARG00000007436 43 1 1.000 - - - - - - - - arginine vasopressin receptor 2a, duplicate a [Source:ZFIN;Acc:ZDB-GENE-090313-344]
61. si:dkey-279j5.1 ENSDARG00000101459 17 1 - - - - - 1.000 - - - si:dkey-279j5.1 [Source:ZFIN;Acc:ZDB-GENE-120703-27]
62. RAP1GAP2 RAP1GAP2 52 1 1.000 - - - - - - - -
63. si:ch73-303g23.4 si:ch73-303g23.4 386 1 1.000 - - - - - - - -
64. si:ch211-179l5.6 si:ch211-179l5.6 33 1 1.000 - - - - - - - -
65. si:ch211-271e10.1 ENSDARG00000095735 15 1 1.000 - - - - - - - - si:ch211-271e10.1 [Source:ZFIN;Acc:ZDB-GENE-060526-145]
66. si:dkey-197d18.3 si:dkey-197d18.3 7 1 - - - - - 1.000 - - -
67. BX571881.1 BX571881.1 2 1 - - - - - 1.000 - - -
68. SLC22A7 SLC22A7 3 1 - - - - - 1.000 - - -
69. XCR1 XCR1 9 1 1.000 - - - - - - - -
70. fam26f 595 1 1.000 - - - - - - - - family with sequence similarity 26, member F
71. nefla ENSDARG00000057568 62 1 1.000 - - - - - - - - neurofilament, light polypeptide a [Source:ZFIN;Acc:ZDB-GENE-091117-1]
72. lctlb ENSDARG00000016337 35 1 1.000 - - - - - - - - lactase-like b [Source:ZFIN;Acc:ZDB-GENE-060503-93]
73. ppa1a ENSDARG00000099933 31 1 1.000 - - - - - - - - pyrophosphatase (inorganic) 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1695]
74. rpn2 ENSDARG00000009724 322 1 - - - - - 1.000 - - - ribophorin II [Source:ZFIN;Acc:ZDB-GENE-030131-7928]
75. zgc:173594 57 1 1.000 - - - - - - - - zgc:173594
76. si:dkey-24p1.6 ENSDARG00000028784, ENSDARG00000097212 23 1 1.000 - - - - - - - - si:dkey-24p1.6 [Source:ZFIN;Acc:ZDB-GENE-060503-67]
77. ZNF337_19 ZNF337_19 3 1 - - - - 1.000 - - - -
78. zgc:174696 ENSDARG00000110658 67 1 - - - - - 1.000 - - - zgc:174696 [Source:ZFIN;Acc:ZDB-GENE-030131-2836]
79. si:ch211-265m20.8 120 1 1.000 - - - - - - - - si:ch211-265m20.8, transcript variant X1
80. CABZ01068324.1 CABZ01068324.1 4 1 1.000 - - - - - - - -
81. SLC1A7 SLC1A7 3 1 - - - - - 1.000 - - -
82. tmem196b ENSDARG00000090140 20 1 - - - - - 1.000 - - - transmembrane protein 196b [Source:ZFIN;Acc:ZDB-GENE-110914-248]
83. si:dkey-9i23.6 ENSDARG00000094678 58 1 - - - - - 1.000 - - - si:dkey-9i23.6 [Source:ZFIN;Acc:ZDB-GENE-090313-365]
84. SDSL ENSDARG00000074698 34 1 - - - - - 1.000 - - - serine dehydratase-like [Source:ZFIN;Acc:ZDB-GENE-131121-410]
85. CABZ01055343.1 CABZ01055343.1 12 1 1.000 - - - - - - - -
86. sybu ENSDARG00000060112 22 1 - - - - - 1.000 - - - syntabulin (syntaxin-interacting) [Source:ZFIN;Acc:ZDB-GENE-060929-1202]
87. CABZ01085657.1 CABZ01085657.1 23 1 - - - - - 1.000 - - -
88. si:dkey-94e7.2 ENSDARG00000068474 14 1 - - - - - 1.000 - - - si:dkey-94e7.2 [Source:ZFIN;Acc:ZDB-GENE-070912-611]
89. CR631122.1 ENSDARG00000044534 8 1 1.000 - - - - - - - - protein RD3-like [Source:NCBI gene;Acc:100149591]
90. si:dkeyp-52c3.1 3 1 - - - - 1.000 - - - - si:dkeyp-52c3.1, transcript variant X1
91. CR790363.1 ENSDARG00000097364 145 1 - - - - - 1.000 - - -
92. Vault_1 Vault_1 6 1 1.000 - - - - - - - -
93. PLEKHG3 72 1 - - - - - 1.000 - - - pleckstrin homology and RhoGEF domain containing G3, transcript variant X5
94. itln3 ENSDARG00000003523 3 1 - - - - - 1.000 - - - intelectin 3 [Source:ZFIN;Acc:ZDB-GENE-090527-4]
95. CT583679.1 CT583679.1 11 1 - - - - - 1.000 - - -
96. ptger1b ENSDARG00000104847 91 1 1.000 - - - - - - - - prostaglandin E receptor 1b (subtype EP1) [Source:ZFIN;Acc:ZDB-GENE-100922-278]
97. si:dkeyp-9d4.2 ENSDARG00000029720 9 1 1.000 - - - - - - - - si:dkeyp-9d4.2 [Source:ZFIN;Acc:ZDB-GENE-090312-156]
98. ddhd1b ENSDARG00000037042, ENSDARG00000111543, ENSDARG00000113512 12 1 1.000 - - - - - - - - DDHD domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-040724-18]
99. iffo1a ENSDARG00000062976 5 1 - - - - - 1.000 - - - intermediate filament family orphan 1a [Source:ZFIN;Acc:ZDB-GENE-060503-418]
100. scospondin ENSDARG00000067859 4 1 - - - - - 1.000 - - - subcommissural organ spondin [Source:ZFIN;Acc:ZDB-GENE-051114-1]

There are 1167 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA