Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for usf1l

Gene Name Gene ID Reads Annotation
usf1l ENSDARG00000014463, ENSDARG00000109684, ENSDARG00000114279 1581 upstream transcription factor 1, like [Source:ZFIN;Acc:ZDB-GENE-040426-2269]










Genes with expression patterns similar to usf1l

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. usf1l ENSDARG00000014463, ENSDARG00000109684, ENSDARG00000114279 1581 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 upstream transcription factor 1, like [Source:ZFIN;Acc:ZDB-GENE-040426-2269]
2. znf592 ENSDARG00000060885 776 2.193 - 0.710 - - - 0.759 0.724 - - zinc finger protein 592 [Source:ZFIN;Acc:ZDB-GENE-030131-9613]
3. AMPD2 AMPD2 1723 1.777 - - - - 0.990 - 0.787 - -
4. snrnp70 ENSDARG00000077126 5921 1.74 - 0.750 - - 0.990 - - - - small nuclear ribonucleoprotein 70 (U1) [Source:ZFIN;Acc:ZDB-GENE-040825-2]
5. si:ch211-22i13.2 ENSDARG00000043485 4719 1.73 - 0.765 - - 0.965 - - - - si:ch211-22i13.2 [Source:ZFIN;Acc:ZDB-GENE-041014-143]
6. zgc:55558 ENSDARG00000013161, ENSDARG00000111354 1687 1.729 - 0.738 - - 0.991 - - - - zgc:55558 [Source:ZFIN;Acc:ZDB-GENE-040426-740]
7. zfyve21 ENSDARG00000027887 1687 1.728 - - - - 0.993 - 0.735 - - zinc finger, FYVE domain containing 21 [Source:ZFIN;Acc:ZDB-GENE-030131-1296]
8. yy1a ENSDARG00000042796 4982 1.725 - 0.747 - - 0.978 - - - - YY1 transcription factor a [Source:ZFIN;Acc:ZDB-GENE-030131-1117]
9. nrf1 ENSDARG00000000018 4683 1.716 - 0.735 - - 0.981 - - - - nuclear respiratory factor 1 [Source:ZFIN;Acc:ZDB-GENE-001221-1]
10. CR954963.1 ENSDARG00000097153 1135 1.715 - 0.725 - - 0.990 - - - -
11. srpk1a ENSDARG00000073997, ENSDARG00000116973 2424 1.701 - 0.710 - - 0.991 - - - - SRSF protein kinase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2399]
12. prps1b ENSDARG00000037506, ENSDARG00000110507 4170 1.688 - 0.721 - - 0.967 - - - - phosphoribosyl pyrophosphate synthetase 1B [Source:ZFIN;Acc:ZDB-GENE-030131-4011]
13. dido1 ENSDARG00000057940 3819 1.683 - - - - 0.958 - 0.725 - - death inducer-obliterator 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6117]
14. pcyt1aa ENSDARG00000011233 1985 1.642 - 0.803 - - - 0.839 - - - phosphate cytidylyltransferase 1, choline, alpha a [Source:ZFIN;Acc:ZDB-GENE-050417-108]
15. si:ch211-10d23.5 ENSDARG00000095510 2632 1.55 - 0.755 - - - - - 0.795 - si:ch211-10d23.5 [Source:ZFIN;Acc:ZDB-GENE-090313-10]
16. auh ENSDARG00000042975 1841 1.536 - 0.768 - - - 0.768 - - - AU RNA binding protein/enoyl-CoA hydratase [Source:ZFIN;Acc:ZDB-GENE-040801-95]
17. AL954372.1 ENSDARG00000112499 589 1.508 - 0.756 - - - 0.752 - - -
18. WDFY3 ENSDARG00000078890 2092 1.502 - 0.765 - - - 0.737 - - - WD repeat and FYVE domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-070705-153]
19. uchl3 ENSDARG00000030177, ENSDARG00000109434 2843 1.5 - - - - - 0.789 0.711 - - ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) [Source:ZFIN;Acc:ZDB-GENE-050522-158]
20. rap2c ENSDARG00000015649 4709 1.495 - - - - - - 0.756 - 0.739 RAP2C, member of RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-041024-1]
21. kif11 ENSDARG00000010948 4973 1.488 - 0.731 - - 0.757 - - - - kinesin family member 11 [Source:ZFIN;Acc:ZDB-GENE-020426-1]
22. CYHR1 ENSDARG00000061057 2625 1.476 - 0.741 - - - 0.735 - - - cysteine/histidine-rich 1 [Source:ZFIN;Acc:ZDB-GENE-060929-720]
23. aldh1a2 ENSDARG00000053493, ENSDARG00000113122 1679 1.468 0.705 0.763 - - - - - - - aldehyde dehydrogenase 1 family, member A2 [Source:ZFIN;Acc:ZDB-GENE-011010-3]
24. fus ENSDARG00000037968, ENSDARG00000113554, ENSDARG00000114284 4319 1.456 - 0.711 - - - - 0.745 - - FUS RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-040426-1010]
25. rbpja ENSDARG00000003398 1309 1.453 - 0.734 - - - 0.719 - - - recombination signal binding protein for immunoglobulin kappa J region a [Source:ZFIN;Acc:ZDB-GENE-031117-1]
26. acp1 ENSDARG00000076486 3275 1.425 - 0.716 0.709 - - - - - - acid phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-050327-12]
27. sap30bp ENSDARG00000031261 1348 1.417 - - - - - 0.709 0.708 - - SAP30 binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-457]
28. stc2a ENSDARG00000056680, ENSDARG00000109468 1156 0.995 - - - - 0.995 - - - - stanniocalcin 2a [Source:ZFIN;Acc:ZDB-GENE-041008-14]
29. bag1 ENSDARG00000020895 1660 0.994 - - - - 0.994 - - - - BCL2 associated athanogene 1 [Source:ZFIN;Acc:ZDB-GENE-050309-89]
30. zgc:66447 ENSDARG00000025577, ENSDARG00000111229 744 0.994 - - - - 0.994 - - - - zgc:66447 [Source:ZFIN;Acc:ZDB-GENE-030131-4748]
31. zgc:113333 ENSDARG00000038242 797 0.994 - - - - 0.994 - - - - zgc:113333 [Source:ZFIN;Acc:ZDB-GENE-050320-57]
32. cpn1 ENSDARG00000005185, ENSDARG00000096728 255 0.993 - - - - 0.993 - - - - carboxypeptidase N, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9116]
33. nrbp1 ENSDARG00000056089, ENSDARG00000114035 1738 0.993 - - - - 0.993 - - - - nuclear receptor binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-041001-146]
34. vsx1 ENSDARG00000056292, ENSDARG00000109766 442 0.993 - - - - 0.993 - - - - visual system homeobox 1 homolog, chx10-like [Source:ZFIN;Acc:ZDB-GENE-990415-205]
35. rnf11a ENSDARG00000010442 592 0.992 - - - - 0.992 - - - - ring finger protein 11a [Source:ZFIN;Acc:ZDB-GENE-040426-1277]
36. shisa3 ENSDARG00000075467 485 0.992 - - - - 0.992 - - - - shisa family member 3 [Source:ZFIN;Acc:ZDB-GENE-070112-2022]
37. zgc:162816 ENSDARG00000070416 974 0.992 - - - - 0.992 - - - - zgc:162816 [Source:ZFIN;Acc:ZDB-GENE-070410-94]
38. st3gal4 ENSDARG00000041006 636 0.992 - - - - 0.992 - - - - ST3 beta-galactoside alpha-2,3-sialyltransferase 4 [Source:ZFIN;Acc:ZDB-GENE-050309-174]
39. smarcal1 ENSDARG00000102265 1921 0.992 - - - - 0.992 - - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 [Source:ZFIN;Acc:ZDB-GENE-041210-303]
40. ABTB2 ABTB2 584 0.992 - - - - 0.992 - - - -
41. appb ENSDARG00000055543, ENSDARG00000109552 4461 0.992 - - - - 0.992 - - - - amyloid beta (A4) precursor protein b [Source:ZFIN;Acc:ZDB-GENE-020220-1]
42. NDST1 NDST1 1584 0.992 - - - - 0.992 - - - -
43. foxi3a ENSDARG00000055926 749 0.992 - - - - 0.992 - - - - forkhead box I3a [Source:ZFIN;Acc:ZDB-GENE-031126-3]
44. ccdc19 ccdc19 495 0.992 - - - - 0.992 - - - -
45. KDM5A ENSDARG00000104567 450 0.992 - - - - 0.992 - - - - lysine (K)-specific demethylase 5A [Source:ZFIN;Acc:ZDB-GENE-150114-1]
46. rhbdd2 ENSDARG00000092463 937 0.992 - - - - 0.992 - - - - rhomboid domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-091204-359]
47. etnk2 ENSDARG00000070213, ENSDARG00000110347 736 0.992 - - - - 0.992 - - - - ethanolamine kinase 2 [Source:ZFIN;Acc:ZDB-GENE-050913-135]
48. reep3l reep3l 608 0.992 - - - - 0.992 - - - -
49. marveld1 ENSDARG00000011724 1025 0.992 - - - - 0.992 - - - - MARVEL domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050208-33]
50. commd3 ENSDARG00000045402 1601 0.992 - - - - 0.992 - - - - COMM domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-041219-3]
51. zgc:162967 zgc:162967 2132 0.992 - - - - 0.992 - - - -
52. rqcd1 2301 0.992 - - - - 0.992 - - - - RCD1 required for cell differentiation1 homolog (S. pombe)
53. emid1 ENSDARG00000076119 862 0.992 - - - - 0.992 - - - - EMI domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-070705-40]
54. ypel3 ENSDARG00000055510 1344 0.991 - - - - 0.991 - - - - yippee-like 3 [Source:ZFIN;Acc:ZDB-GENE-030516-4]
55. SI:DKEY-209E8.1 SI:DKEY-209E8.1 1143 0.991 - - - - 0.991 - - - -
56. si:ch211-79l20.4 1305 0.991 - - - - 0.991 - - - - si:ch211-79l20.4, transcript variant X3
57. gli2b ENSDARG00000020884 1468 0.991 - - - - 0.991 - - - - GLI family zinc finger 2b [Source:ZFIN;Acc:ZDB-GENE-050523-1]
58. mutyh 512 0.991 - - - - 0.991 - - - - mutY DNA glycosylase
59. specc1la ENSDARG00000006719, ENSDARG00000115728 1079 0.991 - - - - 0.991 - - - - sperm antigen with calponin homology and coiled-coil domains 1-like a [Source:ZFIN;Acc:ZDB-GENE-060810-139]
60. zbtb33 ENSDARG00000071467, ENSDARG00000112085 1425 0.991 - - - - 0.991 - - - - zinc finger and BTB domain containing 33 [Source:ZFIN;Acc:ZDB-GENE-070412-3]
61. unc119.1 ENSDARG00000009629 1193 0.991 - - - - 0.991 - - - - unc-119 homolog 1 [Source:ZFIN;Acc:ZDB-GENE-030219-130]
62. tmem223 ENSDARG00000069494 1528 0.99 - - - - 0.990 - - - - transmembrane protein 223 [Source:ZFIN;Acc:ZDB-GENE-040801-113]
63. camk2a ENSDARG00000053617 950 0.99 - - - - 0.990 - - - - calcium/calmodulin-dependent protein kinase II alpha [Source:ZFIN;Acc:ZDB-GENE-051113-72]
64. KLHL13 ENSDARG00000086463, ENSDARG00000103786, ENSDARG00000115063 914 0.99 - - - - 0.990 - - - - kelch-like family member 13 [Source:ZFIN;Acc:ZDB-GENE-030131-2671]
65. dnajb12a ENSDARG00000039363 1072 0.99 - - - - 0.990 - - - - DnaJ (Hsp40) homolog, subfamily B, member 12a [Source:ZFIN;Acc:ZDB-GENE-030131-2725]
66. kctd9 kctd9 973 0.99 - - - - 0.990 - - - -
67. nkain1 ENSDARG00000006859 1961 0.99 - - - - 0.990 - - - - sodium/potassium transporting ATPase interacting 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1472]
68. pou4f1 ENSDARG00000005559 821 0.99 - - - - 0.990 - - - - POU class 4 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-000523-2]
69. ctnnbip1 ENSDARG00000038954 2519 0.99 - - - - 0.990 - - - - catenin, beta interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-000906-3]
70. azi1_1 azi1_1 1375 0.989 - - - - 0.989 - - - -
71. tsc2 ENSDARG00000103125 1403 0.989 - - - - 0.989 - - - - TSC complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2702]
72. prox1a ENSDARG00000055158 1411 0.989 - - - - 0.989 - - - - prospero homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-397]
73. si:dkey-20i20.2 ENSDARG00000071719 659 0.989 - - - - 0.989 - - - - si:dkey-20i20.2 [Source:ZFIN;Acc:ZDB-GENE-060503-528]
74. sf3a2 ENSDARG00000021107 2929 0.989 - - - - 0.989 - - - - splicing factor 3a, subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040426-897]
75. znf609 znf609 1049 0.989 - - - - 0.989 - - - -
76. ppme1 ENSDARG00000009771 1697 0.988 - - - - 0.988 - - - - protein phosphatase methylesterase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7064]
77. nfu1 ENSDARG00000068125 1743 0.988 - - - - 0.988 - - - - NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050417-365]
78. vps26a ENSDARG00000056549, ENSDARG00000110388 2650 0.988 - - - - 0.988 - - - - VPS26, retromer complex component A [Source:ZFIN;Acc:ZDB-GENE-040426-1108]
79. ncaph ENSDARG00000061468, ENSDARG00000113773 1401 0.988 - - - - 0.988 - - - - non-SMC condensin I complex, subunit H [Source:ZFIN;Acc:ZDB-GENE-070112-652]
80. rasl11a ENSDARG00000046013 1627 0.988 - - - - 0.988 - - - - RAS-like, family 11, member A [Source:ZFIN;Acc:ZDB-GENE-050417-384]
81. noc4l ENSDARG00000045565 1337 0.988 - - - - 0.988 - - - - nucleolar complex associated 4 homolog [Source:ZFIN;Acc:ZDB-GENE-050522-98]
82. loxl1 ENSDARG00000054451 2485 0.987 - - - - 0.987 - - - - lysyl oxidase-like 1 [Source:ZFIN;Acc:ZDB-GENE-060503-693]
83. zgc:55512 zgc:55512 4436 0.987 - - - - 0.987 - - - -
84. zcchc9 ENSDARG00000007531 1748 0.987 - - - - 0.987 - - - - zinc finger, CCHC domain containing 9 [Source:ZFIN;Acc:ZDB-GENE-031030-9]
85. snx3 ENSDARG00000008678 3430 0.987 - - - - 0.987 - - - - sorting nexin 3 [Source:ZFIN;Acc:ZDB-GENE-030131-921]
86. paqr3a ENSDARG00000017703, ENSDARG00000117061 2018 0.986 - - - - 0.986 - - - - progestin and adipoQ receptor family member IIIa [Source:ZFIN;Acc:ZDB-GENE-040426-1667]
87. tjp2a ENSDARG00000063309 1947 0.986 - - - - 0.986 - - - - tight junction protein 2a (zona occludens 2) [Source:ZFIN;Acc:ZDB-GENE-070925-2]
88. ppp1r3ca ENSDARG00000071005, ENSDARG00000111817, ENSDARG00000112962 2641 0.986 - - - - 0.986 - - - - protein phosphatase 1, regulatory subunit 3Ca [Source:ZFIN;Acc:ZDB-GENE-040718-70]
89. tmem33 ENSDARG00000041332 2883 0.985 - - - - 0.985 - - - - transmembrane protein 33 [Source:ZFIN;Acc:ZDB-GENE-030131-5425]
90. cks1b ENSDARG00000007971 2739 0.985 - - - - 0.985 - - - - CDC28 protein kinase regulatory subunit 1B [Source:ZFIN;Acc:ZDB-GENE-040801-112]
91. adnpa ENSDARG00000062002, ENSDARG00000115617 2009 0.985 - - - - 0.985 - - - - activity-dependent neuroprotector homeobox a [Source:ZFIN;Acc:ZDB-GENE-061215-112]
92. CR387996.1 ENSDARG00000097774 3037 0.985 - - - - 0.985 - - - -
93. itgb1bp1 ENSDARG00000007169 2723 0.984 - - - - 0.984 - - - - integrin beta 1 binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-051113-264]
94. sf3a1 ENSDARG00000041887 6702 0.984 - - - - 0.984 - - - - splicing factor 3a, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030616-156]
95. foxc1b ENSDARG00000055398 1499 0.984 - - - - 0.984 - - - - forkhead box C1b [Source:ZFIN;Acc:ZDB-GENE-010302-2]
96. rnf20 ENSDARG00000016664 3641 0.984 - - - - 0.984 - - - - ring finger protein 20, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-130404-2]
97. gbp ENSDARG00000040059 1939 0.983 - - - - 0.983 - - - - glycogen synthase kinase binding protein [Source:ZFIN;Acc:ZDB-GENE-990714-7]
98. CPEB2 ENSDARG00000052604 2646 0.983 - - - - 0.983 - - - - cytoplasmic polyadenylation element binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-130530-639]
99. rad23b ENSDARG00000021550 2575 0.983 - - - - 0.983 - - - - RAD23 homolog B, nucleotide excision repair protein [Source:ZFIN;Acc:ZDB-GENE-040426-1487]
100. boc ENSDARG00000074335 4832 0.983 - - - - 0.983 - - - - BOC cell adhesion associated, oncogene regulated [Source:ZFIN;Acc:ZDB-GENE-030131-6560]

There are 653 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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