Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for usf1

Gene Name Gene ID Reads Annotation
usf1 ENSDARG00000041689 1619 upstream transcription factor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1072]










Genes with expression patterns similar to usf1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. usf1 ENSDARG00000041689 1619 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 upstream transcription factor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1072]
2. nasp ENSDARG00000039208, ENSDARG00000114134 873 2.448 - 0.751 - - - 0.842 0.855 - - nuclear autoantigenic sperm protein (histone-binding) [Source:ZFIN;Acc:ZDB-GENE-030131-5511]
3. smcr8a ENSDARG00000052818 559 1.662 - - - - - - 0.926 0.736 - Smith-Magenis syndrome chromosome region, candidate 8a [Source:ZFIN;Acc:ZDB-GENE-071212-4]
4. BX511129.1 ENSDARG00000093452 340 1.635 - - - - - 0.754 0.881 - - uncharacterized LOC100535312 [Source:NCBI gene;Acc:100535312]
5. si:ch211-194k22.8 ENSDARG00000096711 1318 1.635 - 0.731 - - - - 0.904 - - si:ch211-194k22.8 [Source:ZFIN;Acc:ZDB-GENE-030131-1820]
6. rhbdd2 ENSDARG00000092463 937 1.632 - 0.813 - - - 0.819 - - - rhomboid domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-091204-359]
7. dek ENSDARG00000070108 2262 1.621 - 0.725 - - - - - 0.896 - DEK proto-oncogene [Source:ZFIN;Acc:ZDB-GENE-060512-191]
8. psd3l ENSDARG00000104820 1201 1.62 - - - - - 0.864 - 0.756 - pleckstrin and Sec7 domain containing 3, like [Source:ZFIN;Acc:ZDB-GENE-030131-8195]
9. lig4 ENSDARG00000060620 369 1.615 - - - - - - 0.875 0.740 - ligase IV, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-070820-10]
10. si:ch211-113p18.3 ENSDARG00000087835 377 1.615 - - - - - - 0.878 0.737 - si:ch211-113p18.3 [Source:ZFIN;Acc:ZDB-GENE-030131-4983]
11. si:dkey-17e16.17 615 1.61 - 0.706 - - - - 0.904 - - si:dkey-17e16.17
12. rqcd1 2301 1.591 - - - - - 0.733 0.858 - - RCD1 required for cell differentiation1 homolog (S. pombe)
13. ptgs2b ENSDARG00000010276 692 1.591 - 0.762 - - - - 0.829 - - prostaglandin-endoperoxide synthase 2b [Source:ZFIN;Acc:ZDB-GENE-041014-323]
14. prp19 prp19 4804 1.583 - - - - - - 0.863 0.720 -
15. spred1 ENSDARG00000041449, ENSDARG00000117025 1124 1.578 - - - 0.723 - - - 0.855 - sprouty-related, EVH1 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2338]
16. smu1 smu1 982 1.574 - - - - - 0.781 0.793 - -
17. btbd6a ENSDARG00000076440 748 1.57 - - - - - 0.865 0.705 - - BTB (POZ) domain containing 6a [Source:ZFIN;Acc:ZDB-GENE-080218-26]
18. CABZ01043370.1 CABZ01043370.1 2013 1.57 - - - - - - 0.860 0.710 -
19. chsy1 ENSDARG00000079027 455 1.569 - 0.754 - - - - 0.815 - - chondroitin sulfate synthase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3127]
20. psenen ENSDARG00000068698 2777 1.569 - 0.816 - - - - - 0.753 - presenilin enhancer, gamma-secretase subunit [Source:ZFIN;Acc:ZDB-GENE-040218-1]
21. rspo2 ENSDARG00000079570, ENSDARG00000113124 1688 1.568 - 0.719 - - - - 0.849 - - R-spondin 2 [Source:ZFIN;Acc:ZDB-GENE-060503-667]
22. ercc1 ENSDARG00000031680 900 1.567 - - - - - - 0.807 0.760 - excision repair cross-complementation group 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2606]
23. CITED1 ENSDARG00000077769 692 1.565 - - - - - 0.815 - 0.750 - Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5596]
24. slc30a5 ENSDARG00000051921 1113 1.561 - 0.734 - - - - 0.827 - - solute carrier family 30 (zinc transporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-040718-6]
25. SIPA1 SIPA1 302 1.55 - - - - - 0.809 - 0.741 -
26. fam195b 1159 1.547 - 0.773 - - - - 0.774 - - family with sequence similarity 195, member B
27. CPNE4 CPNE4 268 1.545 - - - - - 0.710 0.835 - -
28. sf1 ENSDARG00000008188 5142 1.545 - - - - - - 0.719 0.826 - splicing factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2492]
29. zeb2a ENSDARG00000062338, ENSDARG00000111349, ENSDARG00000115964 6087 1.531 - - - - - 0.790 - 0.741 - zinc finger E-box binding homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-070912-553]
30. BX649458.1 BX649458.1 166 1.528 0.712 - - - - 0.816 - - -
31. dctn3 ENSDARG00000041363 3351 1.527 - 0.715 - - - - - 0.812 - dynactin 3 (p22) [Source:ZFIN;Acc:ZDB-GENE-040704-65]
32. ccs ENSDARG00000092003, ENSDARG00000116246 227 1.52 - 0.730 - - - - 0.790 - - copper chaperone for superoxide dismutase [Source:ZFIN;Acc:ZDB-GENE-050417-322]
33. DGKI 306 1.514 - - - - - 0.781 - 0.733 - diacylglycerol kinase, iota
34. cetn3 ENSDARG00000011825 1087 1.513 - - - - - - 0.773 0.740 - centrin 3 [Source:ZFIN;Acc:ZDB-GENE-050522-152]
35. uchl5 ENSDARG00000103404, ENSDARG00000110434 4029 1.51 - - - - - 0.756 - 0.754 - ubiquitin carboxyl-terminal hydrolase L5 [Source:ZFIN;Acc:ZDB-GENE-040426-2051]
36. lrrc8a lrrc8a 674 1.508 - - - - - 0.730 0.778 - -
37. tnrc6b ENSDARG00000074161 4597 1.506 - - - - - - 0.788 - 0.718 trinucleotide repeat containing 6b [Source:ZFIN;Acc:ZDB-GENE-030131-13]
38. syne1b ENSDARG00000063068 786 1.5 - - - - - - 0.757 0.743 - spectrin repeat containing, nuclear envelope 1b [Source:ZFIN;Acc:ZDB-GENE-071218-4]
39. ZNF70_2 ZNF70_2 1866 1.499 - - - - - - 0.761 0.738 -
40. CU929408.1 CU929408.1 714 1.496 - - - - - 0.735 0.761 - -
41. vps25 ENSDARG00000059079 3747 1.49 - - 0.787 - - - 0.703 - - vacuolar protein sorting 25 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050506-30]
42. parp1 ENSDARG00000019529 6787 1.487 - - - - 0.735 - - - 0.752 poly (ADP-ribose) polymerase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3955]
43. ss18 ENSDARG00000002970 2618 1.487 - 0.708 - - - - 0.779 - - synovial sarcoma translocation, chromosome 18 (H. sapiens) [Source:ZFIN;Acc:ZDB-GENE-030131-4867]
44. ralgps2 ENSDARG00000026519 1610 1.487 - - - - - 0.739 0.748 - - Ral GEF with PH domain and SH3 binding motif 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1212]
45. unc119b ENSDARG00000044362 1528 1.479 0.715 - - - - - - 0.764 - unc-119 homolog b (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-050201-2]
46. prpf31 ENSDARG00000095904 526 1.465 - - - 0.728 - - - 0.737 - PRP31 pre-mRNA processing factor 31 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-1561]
47. tmem151b tmem151b 442 1.465 - - - 0.732 - 0.733 - - -
48. ATL2 ENSDARG00000057719, ENSDARG00000113378, ENSDARG00000113487 1987 1.465 - 0.717 - - - - - 0.748 - atlastin GTPase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6505]
49. casp9 ENSDARG00000004325 306 1.462 - 0.762 - - - - 0.700 - - caspase 9, apoptosis-related cysteine peptidase [Source:ZFIN;Acc:ZDB-GENE-030825-5]
50. itga11a ENSDARG00000036086, ENSDARG00000111495 254 1.461 0.723 - - - - - - 0.738 - integrin, alpha 11a [Source:ZFIN;Acc:ZDB-GENE-050324-1]
51. fbxo10 ENSDARG00000061936, ENSDARG00000116317 1015 1.46 - 0.703 - - - - 0.757 - - F-box protein 10 [Source:ZFIN;Acc:ZDB-GENE-090313-270]
52. lrrc57 ENSDARG00000043938 1100 1.448 - 0.721 - - - - - 0.727 - leucine rich repeat containing 57 [Source:ZFIN;Acc:ZDB-GENE-040718-372]
53. ankzf1 ENSDARG00000041904 917 1.447 - 0.732 - - - - 0.715 - - ankyrin repeat and zinc finger domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050309-80]
54. snrpd2 ENSDARG00000040440, ENSDARG00000110285 4301 1.443 - - - - - - 0.717 0.726 - small nuclear ribonucleoprotein D2 polypeptide [Source:ZFIN;Acc:ZDB-GENE-040914-10]
55. RPS6KC1 ENSDARG00000104103 746 1.432 - 0.708 - - - 0.724 - - - ribosomal protein S6 kinase polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-081031-83]
56. CABZ01044136.1 CABZ01044136.1 2596 1.428 - 0.703 - - - - - 0.725 -
57. ep300b ENSDARG00000061108 5173 1.425 - - - - - - 0.710 0.715 - E1A binding protein p300 b [Source:ZFIN;Acc:ZDB-GENE-080403-15]
58. kmt2a ENSDARG00000004537 2169 1.412 - 0.712 - - - - - - 0.700 lysine (K)-specific methyltransferase 2A [Source:ZFIN;Acc:ZDB-GENE-080521-3]
59. atad5a ENSDARG00000070568 1840 0.944 - - - - - - 0.944 - - ATPase family, AAA domain containing 5a [Source:ZFIN;Acc:ZDB-GENE-070912-20]
60. arxa ENSDARG00000058011 440 0.941 - - - - - - 0.941 - - aristaless related homeobox a [Source:ZFIN;Acc:ZDB-GENE-990415-15]
61. si:ch211-207m11.3 si:ch211-207m11.3 401 0.94 - - - - - - 0.940 - -
62. dennd1b ENSDARG00000101868 328 0.94 - - - - - - 0.940 - - DENN/MADD domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-060503-16]
63. zbtb4 ENSDARG00000105255 362 0.939 - - - - - - 0.939 - - zinc finger and BTB domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-100318-5]
64. otpb ENSDARG00000058379 1143 0.936 - - - - - - 0.936 - - orthopedia homeobox b [Source:ZFIN;Acc:ZDB-GENE-990708-7]
65. POLDIP3 ENSDARG00000099375 832 0.933 - - - - - - 0.933 - - polymerase (DNA-directed), delta interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-120201-2]
66. esrrga ENSDARG00000004861 805 0.932 - - - - - - 0.932 - - estrogen-related receptor gamma a [Source:ZFIN;Acc:ZDB-GENE-030821-2]
67. bcl2l10 ENSDARG00000026766 1426 0.932 - - - - - - 0.932 - - BCL2 like 10 [Source:ZFIN;Acc:ZDB-GENE-030825-2]
68. TIMM22 ENSDARG00000091413 957 0.928 - - - - - - 0.928 - - translocase of inner mitochondrial membrane 22 [Source:HGNC Symbol;Acc:HGNC:17317]
69. MAN1A2 ENSDARG00000041728 359 0.928 - - - - - - 0.928 - - mannosidase, alpha, class 1A, member 2 [Source:ZFIN;Acc:ZDB-GENE-070912-390]
70. tcap ENSDARG00000007344 276 0.928 - - - - - - 0.928 - - titin-cap (telethonin) [Source:ZFIN;Acc:ZDB-GENE-070501-5]
71. ZBTB11 ENSDARG00000017886 817 0.927 - - - - - - 0.927 - - zinc finger and BTB domain containing 11 [Source:ZFIN;Acc:ZDB-GENE-030131-5055]
72. sepsecs ENSDARG00000033861 478 0.927 - - - - - - 0.927 - - Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase [Source:ZFIN;Acc:ZDB-GENE-040426-859]
73. NPBWR2 NPBWR2 132 0.926 - - - - - - 0.926 - -
74. hsdl1 ENSDARG00000041736 171 0.925 - - - - - - 0.925 - - hydroxysteroid dehydrogenase like 1 [Source:ZFIN;Acc:ZDB-GENE-041212-31]
75. eif4enif1 ENSDARG00000016177 238 0.925 - - - - - - 0.925 - - eukaryotic translation initiation factor 4E nuclear import factor 1 [Source:ZFIN;Acc:ZDB-GENE-050320-113]
76. KANSL1_1 KANSL1_1 1809 0.923 - - - - - - 0.923 - -
77. si:ch211-166e11.5 ENSDARG00000100407 576 0.923 - - - - - - 0.923 - - si:ch211-166e11.5 [Source:ZFIN;Acc:ZDB-GENE-070912-142]
78. BX465851.1 BX465851.1 237 0.922 - - - - - - 0.922 - -
79. s100a1 ENSDARG00000015543 274 0.921 - - - - - - 0.921 - - S100 calcium binding protein A1 [Source:ZFIN;Acc:ZDB-GENE-040916-1]
80. si:dkey-161j23.7 ENSDARG00000092882 180 0.921 - - - - - - 0.921 - - si:dkey-161j23.7 [Source:ZFIN;Acc:ZDB-GENE-091204-391]
81. dram2b ENSDARG00000044241 503 0.919 - - - - - - 0.919 - - DNA-damage regulated autophagy modulator 2b [Source:ZFIN;Acc:ZDB-GENE-040625-141]
82. smg8 ENSDARG00000061378 1164 0.919 - - - - - - 0.919 - - SMG8 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-091204-279]
83. rab11fip4a ENSDARG00000090170 839 0.918 - - - - - - 0.918 - - RAB11 family interacting protein 4 (class II) a [Source:ZFIN;Acc:ZDB-GENE-040718-266]
84. CT030012.1 ENSDARG00000105611 154 0.918 - - - - - - 0.918 - -
85. CABZ01073405.1 CABZ01073405.1 275 0.917 - - - - - - 0.917 - -
86. uspl1 ENSDARG00000034825, ENSDARG00000109866 457 0.917 - - - - - - 0.917 - - ubiquitin specific peptidase like 1 [Source:ZFIN;Acc:ZDB-GENE-040930-7]
87. atp11c ENSDARG00000036442, ENSDARG00000116165 336 0.915 - - - - - - 0.915 - - ATPase phospholipid transporting 11C [Source:ZFIN;Acc:ZDB-GENE-030616-51]
88. syt2a ENSDARG00000025206 681 0.915 - - - - - - 0.915 - - synaptotagmin IIa [Source:ZFIN;Acc:ZDB-GENE-060503-315]
89. scdb ENSDARG00000030265 271 0.915 - - - - - - 0.915 - - stearoyl-CoA desaturase b [Source:ZFIN;Acc:ZDB-GENE-050522-12]
90. GANAB_2 GANAB_2 3210 0.914 - - - - - - 0.914 - -
91. inadl 80 0.914 - - - - - - 0.914 - - InaD-like (Drosophila), transcript variant X4
92. gsk3aa ENSDARG00000029501 957 0.914 - - - - - - 0.914 - - glycogen synthase kinase 3 alpha a [Source:ZFIN;Acc:ZDB-GENE-060503-796]
93. BX571794.1 ENSDARG00000097619 376 0.913 - - - - - 0.913 - - -
94. nudt17 ENSDARG00000008014 479 0.913 - - - - - - 0.913 - - nudix (nucleoside diphosphate linked moiety X)-type motif 17 [Source:ZFIN;Acc:ZDB-GENE-050913-50]
95. tctex1d1 ENSDARG00000103545 409 0.911 - - - - - - 0.911 - - Tctex1 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040912-49]
96. csrnp2 ENSDARG00000075972 1650 0.911 - - - - - - - 0.911 - cysteine-serine-rich nuclear protein 2 [Source:ZFIN;Acc:ZDB-GENE-090312-137]
97. rxrbb ENSDARG00000002006, ENSDARG00000117079 1975 0.909 - - - - - - 0.909 - - retinoid x receptor, beta b [Source:ZFIN;Acc:ZDB-GENE-990415-242]
98. tdp1 ENSDARG00000073866 214 0.908 - - - - - - 0.908 - - tyrosyl-DNA phosphodiesterase 1 [Source:ZFIN;Acc:ZDB-GENE-090909-1]
99. si:ch211-174j14.2 ENSDARG00000093015 111 0.907 - - - - - - 0.907 - - si:ch211-174j14.2 [Source:ZFIN;Acc:ZDB-GENE-050419-63]
100. fntb ENSDARG00000027916 736 0.907 - - - - - - 0.907 - - farnesyltransferase, CAAX box, beta [Source:ZFIN;Acc:ZDB-GENE-030131-2220]

There are 1212 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA