Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for usb1

Gene Name Gene ID Reads Annotation
usb1 ENSDARG00000003841 524 U6 snRNA biogenesis 1 [Source:ZFIN;Acc:ZDB-GENE-040801-197]










Genes with expression patterns similar to usb1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. usb1 ENSDARG00000003841 524 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 U6 snRNA biogenesis 1 [Source:ZFIN;Acc:ZDB-GENE-040801-197]
2. APLF APLF 691 2.241 - - - - - 0.778 0.736 0.727 -
3. tnni2a.2 ENSDARG00000005841 483 1.727 - - - 0.867 - 0.860 - - - troponin I type 2a (skeletal, fast), tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-040426-970]
4. dhrs13l1 ENSDARG00000098746 102 1.706 0.870 - - - - 0.836 - - - dehydrogenase/reductase (SDR family) member 13 like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1907]
5. USP31 ENSDARG00000074017 628 1.701 0.842 - - - - 0.859 - - - ubiquitin specific peptidase 31 [Source:ZFIN;Acc:ZDB-GENE-100210-4]
6. calhm2 ENSDARG00000039482 138 1.675 - - - 0.860 - 0.815 - - - calcium homeostasis modulator 2 [Source:ZFIN;Acc:ZDB-GENE-030616-561]
7. phgdh ENSDARG00000001873 8325 1.67 - 0.866 - - - 0.804 - - - phosphoglycerate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030131-647]
8. bcr ENSDARG00000079286 578 1.659 - - - 0.839 - 0.820 - - - breakpoint cluster region [Source:ZFIN;Acc:ZDB-GENE-040724-43]
9. pak4 ENSDARG00000018110 1962 1.655 - - - 0.828 - - 0.827 - - p21 protein (Cdc42/Rac)-activated kinase 4 [Source:ZFIN;Acc:ZDB-GENE-040704-69]
10. ube3c ENSDARG00000035978, ENSDARG00000112229 787 1.642 - - - 0.826 - 0.816 - - - ubiquitin protein ligase E3C [Source:ZFIN;Acc:ZDB-GENE-040426-1211]
11. akt2 ENSDARG00000011219 647 1.624 - - - - - 0.755 0.869 - - v-akt murine thymoma viral oncogene homolog 2 [Source:ZFIN;Acc:ZDB-GENE-031007-5]
12. flrt3 ENSDARG00000076895 3516 1.622 - - - 0.751 - 0.871 - - - fibronectin leucine rich transmembrane 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1988]
13. si:ch73-211l13.2 ENSDARG00000095974 792 1.621 - 0.765 - - - 0.856 - - - si:ch73-211l13.2 [Source:ZFIN;Acc:ZDB-GENE-110411-257]
14. daxx ENSDARG00000000729 734 1.603 - - - 0.797 - 0.806 - - - death-domain associated protein [Source:ZFIN;Acc:ZDB-GENE-010110-3]
15. zc2hc1a ENSDARG00000027915, ENSDARG00000112745 974 1.602 - - - 0.818 - 0.784 - - - zinc finger, C2HC-type containing 1A [Source:ZFIN;Acc:ZDB-GENE-030131-3132]
16. asphd2 ENSDARG00000059629 1005 1.6 - 0.731 - - - 0.869 - - - aspartate beta-hydroxylase domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-061103-142]
17. ablim1a ENSDARG00000060149 228 1.584 - - - - - 0.842 - 0.742 - actin binding LIM protein 1a [Source:ZFIN;Acc:ZDB-GENE-080219-41]
18. ddb2 ENSDARG00000041140, ENSDARG00000114723 827 1.578 - 0.705 - - - 0.873 - - - damage-specific DNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-050419-169]
19. rbms3 ENSDARG00000044574 2514 1.577 - - - 0.821 - 0.756 - - - RNA binding motif, single stranded interacting protein [Source:ZFIN;Acc:ZDB-GENE-060929-244]
20. gtpbp10 ENSDARG00000040300 533 1.573 - - - 0.828 - 0.745 - - - GTP-binding protein 10 (putative) [Source:ZFIN;Acc:ZDB-GENE-040718-153]
21. si:ch211-215p11.4 si:ch211-215p11.4 67 1.572 - - - - - 0.855 - 0.717 -
22. kmt2d ENSDARG00000037060 1232 1.569 - - - 0.828 - 0.741 - - - lysine (K)-specific methyltransferase 2D [Source:ZFIN;Acc:ZDB-GENE-060223-2]
23. UNKL ENSDARG00000037838 1086 1.569 0.766 - - - - 0.803 - - - unkempt family zinc finger-like [Source:ZFIN;Acc:ZDB-GENE-131120-196]
24. phf10 ENSDARG00000070084 1210 1.566 - - - - - 0.784 0.782 - - PHD finger protein 10 [Source:ZFIN;Acc:ZDB-GENE-040426-1573]
25. TMEM128 552 1.56 - 0.721 - - - 0.839 - - - transmembrane protein 128
26. tm7sf3 ENSDARG00000093658 754 1.56 0.766 - - 0.794 - - - - - transmembrane 7 superfamily member 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1770]
27. gse1 ENSDARG00000062020 2337 1.557 - 0.829 - - - - 0.728 - - Gse1 coiled-coil protein [Source:ZFIN;Acc:ZDB-GENE-030131-9569]
28. C1H10orf12 C1H10orf12 1663 1.557 - 0.725 - - - 0.832 - - -
29. lmx1ba ENSDARG00000104815 376 1.551 - - - - - 0.821 - 0.730 - LIM homeobox transcription factor 1, beta a [Source:ZFIN;Acc:ZDB-GENE-050114-3]
30. fbrsl1 ENSDARG00000058232 885 1.55 - - - 0.841 - 0.709 - - - fibrosin-like 1 [Source:ZFIN;Acc:ZDB-GENE-070705-487]
31. srpk1b ENSDARG00000031560 2079 1.544 - - - - - 0.801 0.743 - - SRSF protein kinase 1b [Source:ZFIN;Acc:ZDB-GENE-070112-2292]
32. CR936200.1 CR936200.1 327 1.54 - - - 0.762 - 0.778 - - -
33. ppp4ca ENSDARG00000070570 8395 1.54 - 0.723 - 0.817 - - - - - protein phosphatase 4, catalytic subunit a [Source:ZFIN;Acc:ZDB-GENE-030131-4433]
34. phf3 ENSDARG00000034768 1372 1.54 - - - 0.735 - 0.805 - - - PHD finger protein 3 [Source:ZFIN;Acc:ZDB-GENE-090313-207]
35. TTYH1 ENSDARG00000076804 399 1.531 - - - 0.794 - 0.737 - - - tweety family member 1 [Source:ZFIN;Acc:ZDB-GENE-100922-257]
36. krit1 ENSDARG00000098916 431 1.53 - - - 0.763 - 0.767 - - - KRIT1, ankyrin repeat containing [Source:ZFIN;Acc:ZDB-GENE-030131-555]
37. rgs9b ENSDARG00000045156, ENSDARG00000111650 77 1.529 0.702 - - - - 0.827 - - - regulator of G protein signaling 9b [Source:ZFIN;Acc:ZDB-GENE-040426-1708]
38. scpp5 ENSDARG00000078622 15 1.529 0.702 - - - - 0.827 - - - secretory calcium-binding phosphoprotein 5 [Source:ZFIN;Acc:ZDB-GENE-090313-256]
39. cdk12 ENSDARG00000063726 1220 1.524 - - - - - 0.773 - 0.751 - cyclin-dependent kinase 12 [Source:ZFIN;Acc:ZDB-GENE-081104-294]
40. CT867948.2 CT867948.2 131 1.523 - - - - - 0.779 0.744 - -
41. ksr2 ENSDARG00000094526 134 1.519 - - - - - 0.812 - 0.707 - kinase suppressor of ras 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8047]
42. dhx34 ENSDARG00000061168 349 1.518 - - - 0.806 - - 0.712 - - DEAH (Asp-Glu-Ala-His) box polypeptide 34 [Source:ZFIN;Acc:ZDB-GENE-061207-30]
43. xpnpep3 ENSDARG00000007916 166 1.513 - - - - - 0.743 0.770 - - X-prolyl aminopeptidase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-040426-2076]
44. tmem176l.1 ENSDARG00000099491 860 1.51 - 0.787 - - - - 0.723 - - transmembrane protein 176l.1 [Source:ZFIN;Acc:ZDB-GENE-080829-11]
45. eif3ja ENSDARG00000012603 6324 1.509 - 0.765 - - - - 0.744 - - eukaryotic translation initiation factor 3, subunit Ja [Source:ZFIN;Acc:ZDB-GENE-040426-1266]
46. ARHGAP32 ARHGAP32 670 1.505 0.795 - - - - 0.710 - - -
47. EHBP1 ENSDARG00000043643 966 1.504 - 0.802 - - - 0.702 - - - EH domain binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-091006-4]
48. ap2m1b ENSDARG00000033899 317 1.503 - - - - - 0.749 0.754 - - adaptor related protein complex 2 subunit mu 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1103]
49. zgc:171489 ENSDARG00000052300 119 1.493 - - - - - 0.773 0.720 - - zgc:171489 [Source:ZFIN;Acc:ZDB-GENE-080303-25]
50. ENSDARG00000023499 ENSDARG00000023499 395 1.493 - - - - - 0.750 0.743 - -
51. rad21b ENSDARG00000035655 87 1.49 - - - - - 0.770 - 0.720 - RAD21 cohesin complex component b [Source:ZFIN;Acc:ZDB-GENE-060503-223]
52. si:ch211-79l20.4 1305 1.484 0.712 - - 0.772 - - - - - si:ch211-79l20.4, transcript variant X3
53. BX927318.1 ENSDARG00000097713 199 1.48 - - - - - 0.721 0.759 - -
54. snai1b ENSDARG00000046019 886 1.478 - - - 0.701 - 0.777 - - - snail family zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-980526-514]
55. fam102aa ENSDARG00000102566 903 1.476 0.733 - - - - - 0.743 - - family with sequence similarity 102, member Aa [Source:ZFIN;Acc:ZDB-GENE-081104-233]
56. BX465851.1 BX465851.1 237 1.474 0.701 - - - - 0.773 - - -
57. CYHR1 ENSDARG00000061057 2625 1.473 - 0.717 - - - 0.756 - - - cysteine/histidine-rich 1 [Source:ZFIN;Acc:ZDB-GENE-060929-720]
58. cd99l2 ENSDARG00000056722 5036 1.472 - 0.731 - - - 0.741 - - - CD99 molecule-like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1986]
59. tmem135 ENSDARG00000069157 918 1.465 - - - 0.737 - 0.728 - - - transmembrane protein 135 [Source:ZFIN;Acc:ZDB-GENE-070424-70]
60. PPAP2A PPAP2A 2409 1.465 0.754 - - - - - 0.711 - -
61. slc7a3a ENSDARG00000020645 1458 1.464 - - - 0.719 - 0.745 - - - solute carrier family 7 (cationic amino acid transporter, y+ system), member 3a [Source:ZFIN;Acc:ZDB-GENE-041114-206]
62. pbx1a ENSDARG00000100494 854 1.456 - 0.743 - - - - 0.713 - - pre-B-cell leukemia homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-000405-1]
63. dmbx1b ENSDARG00000002510 351 1.454 0.744 - - - - - - 0.710 - diencephalon/mesencephalon homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-050417-97]
64. RBM6 ENSDARG00000077060 3521 1.452 - - - - - 0.749 0.703 - - RNA binding motif protein 6 [Source:ZFIN;Acc:ZDB-GENE-050309-79]
65. usp25 ENSDARG00000012314 734 1.451 - - - 0.745 - - - 0.706 - ubiquitin specific peptidase 25 [Source:ZFIN;Acc:ZDB-GENE-040426-2847]
66. vgll2b ENSDARG00000053773 444 1.44 - - - 0.739 - 0.701 - - - vestigial-like family member 2b [Source:ZFIN;Acc:ZDB-GENE-050809-113]
67. med13b ENSDARG00000003910 1143 1.437 - - - - - 0.700 0.737 - - mediator complex subunit 13b [Source:ZFIN;Acc:ZDB-GENE-030131-3529]
68. bmp6 ENSDARG00000015686 211 1.436 0.721 - - - - - - 0.715 - bone morphogenetic protein 6 [Source:ZFIN;Acc:ZDB-GENE-050306-42]
69. si:ch211-208h1.1 si:ch211-208h1.1 262 1.431 - - - - - 0.725 0.706 - -
70. SACM1L_1 SACM1L_1 750 1.415 - 0.709 - - - - 0.706 - -
71. si:dkey-241l7.10 si:dkey-241l7.10 38 0.904 0.904 - - - - - - - -
72. tm2d1 ENSDARG00000057042 759 0.903 - - - - - 0.903 - - - TM2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050208-580]
73. prelid1b ENSDARG00000044169 501 0.903 - - - - - 0.903 - - - PRELI domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-050522-169]
74. dolpp1 ENSDARG00000036915 114 0.903 0.903 - - - - - - - - dolichyldiphosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-041024-11]
75. WDFY3 ENSDARG00000078890 2092 0.902 - - - - - 0.902 - - - WD repeat and FYVE domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-070705-153]
76. zgc:162160 ENSDARG00000060259 117 0.902 - - - - - 0.902 - - - zgc:162160 [Source:ZFIN;Acc:ZDB-GENE-070424-22]
77. tagln3b ENSDARG00000058394, ENSDARG00000115045 2756 0.901 - - - - - 0.901 - - - transgelin 3b [Source:ZFIN;Acc:ZDB-GENE-030131-4199]
78. CDR2 CDR2 384 0.899 - - - - - 0.899 - - -
79. si:dkey-176f19.6 si:dkey-176f19.6 373 0.895 - - - 0.895 - - - - -
80. CABZ01072534.1 CABZ01072534.1 69 0.895 0.895 - - - - - - - -
81. cplx4b ENSDARG00000059486 3192 0.892 - - - 0.892 - - - - - complexin 4b [Source:ZFIN;Acc:ZDB-GENE-070705-157]
82. rybpb ENSDARG00000053459 1464 0.89 - - - 0.890 - - - - - RING1 and YY1 binding protein b [Source:ZFIN;Acc:ZDB-GENE-061103-96]
83. wnt7aa ENSDARG00000044827 645 0.89 - - - 0.890 - - - - - wingless-type MMTV integration site family, member 7Aa [Source:ZFIN;Acc:ZDB-GENE-051129-1]
84. spryd7b ENSDARG00000069485, ENSDARG00000114214, ENSDARG00000115747 488 0.889 - - - - - - 0.889 - - SPRY domain containing 7b [Source:ZFIN;Acc:ZDB-GENE-040426-1634]
85. pycr1 pycr1 1258 0.888 - - - - - 0.888 - - -
86. KIF21A_1 KIF21A_1 237 0.887 - - - - - 0.887 - - -
87. tmem184c ENSDARG00000078789, ENSDARG00000111570 395 0.887 - - - 0.887 - - - - - transmembrane protein 184C [Source:ZFIN;Acc:ZDB-GENE-090312-89]
88. MAN2A2 ENSDARG00000063101 922 0.886 - - - - - 0.886 - - - mannosidase, alpha, class 2A, member 2 [Source:ZFIN;Acc:ZDB-GENE-110331-1]
89. mcm9 ENSDARG00000013528 212 0.885 - - - - - 0.885 - - - minichromosome maintenance 9 homologous recombination repair factor [Source:ZFIN;Acc:ZDB-GENE-041014-310]
90. si:dkey-52l6.2 si:dkey-52l6.2 384 0.885 - - - 0.885 - - - - -
91. zgc:110821 ENSDARG00000077085 210 0.885 - - - - - 0.885 - - - zgc:110821 [Source:ZFIN;Acc:ZDB-GENE-050227-8]
92. ppp1r26 ENSDARG00000102891 486 0.885 - - - 0.885 - - - - - protein phosphatase 1, regulatory subunit 26 [Source:ZFIN;Acc:ZDB-GENE-061103-607]
93. dot1l ENSDARG00000061992 602 0.885 - - - 0.885 - - - - - DOT1-like histone H3K79 methyltransferase [Source:ZFIN;Acc:ZDB-GENE-060503-341]
94. MON2 ENSDARG00000099798 2359 0.885 - - - - - 0.885 - - - MON2 homolog, regulator of endosome-to-Golgi trafficking [Source:ZFIN;Acc:ZDB-GENE-030131-2712]
95. rabgef1 ENSDARG00000014430 1176 0.885 - - - 0.885 - - - - - RAB guanine nucleotide exchange factor (GEF) 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1486]
96. slc25a21 ENSDARG00000060564 344 0.884 - - - - - 0.884 - - - solute carrier family 25 (mitochondrial oxoadipate carrier), member 21 [Source:ZFIN;Acc:ZDB-GENE-060929-664]
97. CDK5RAP1 ENSDARG00000044925, ENSDARG00000110547, ENSDARG00000112362 390 0.884 - - - - - 0.884 - - - CDK5 regulatory subunit associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-070424-90]
98. rad9a ENSDARG00000056984, ENSDARG00000115514 152 0.884 - - - 0.884 - - - - - RAD9 checkpoint clamp component A [Source:ZFIN;Acc:ZDB-GENE-040426-935]
99. prmt7 ENSDARG00000051902, ENSDARG00000113277, ENSDARG00000116251 440 0.883 - - - - - 0.883 - - - protein arginine methyltransferase 7 [Source:ZFIN;Acc:ZDB-GENE-040426-1560]
100. mms19 ENSDARG00000079067 65 0.882 - - - 0.882 - - - - - MMS19 homolog, cytosolic iron-sulfur assembly component [Source:ZFIN;Acc:ZDB-GENE-120316-2]

There are 1593 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA