Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for upf3a

Gene Name Gene ID Reads Annotation
upf3a ENSDARG00000069297, ENSDARG00000111067 196 UPF3A, regulator of nonsense mediated mRNA decay [Source:ZFIN;Acc:ZDB-GENE-060721-2]










Genes with expression patterns similar to upf3a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. upf3a ENSDARG00000069297, ENSDARG00000111067 196 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 UPF3A, regulator of nonsense mediated mRNA decay [Source:ZFIN;Acc:ZDB-GENE-060721-2]
2. cers6 ENSDARG00000053583 247 3.603 0.801 1.000 - - - 0.829 0.973 - - ceramide synthase 6 [Source:ZFIN;Acc:ZDB-GENE-070522-1]
3. atp2b3b ENSDARG00000023445 1424 3.572 0.849 0.845 - - - 0.933 0.945 - - ATPase plasma membrane Ca2+ transporting 3b [Source:ZFIN;Acc:ZDB-GENE-080409-2]
4. pcsk1nl ENSDARG00000076170 1232 3.557 0.818 0.835 - - - 0.920 0.984 - - proprotein convertase subtilisin/kexin type 1 inhibitor, like [Source:ZFIN;Acc:ZDB-GENE-090427-2]
5. TUBB8P7_1 TUBB8P7_1 2722 3.397 0.872 0.749 - - - 0.801 0.975 - -
6. PPFIA3 ENSDARG00000077053 310 3.342 0.829 0.754 - - - 0.808 0.951 - - protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 [Source:ZFIN;Acc:ZDB-GENE-100311-3]
7. BX957337.1 BX957337.1 1685 3.329 0.821 0.715 - - - 0.860 0.933 - -
8. TUSC5 TUSC5 1436 3.327 0.838 0.726 - - - 0.923 0.840 - -
9. stx1b ENSDARG00000000503 2724 3.302 0.904 0.758 - - - 0.707 0.933 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
10. scn8aa ENSDARG00000005775 792 3.297 0.884 0.844 - - - 0.740 0.829 - - sodium channel, voltage gated, type VIII, alpha subunit a [Source:ZFIN;Acc:ZDB-GENE-000828-1]
11. adam23a ENSDARG00000062323 580 3.286 0.702 0.837 - - - 0.809 0.938 - - ADAM metallopeptidase domain 23a [Source:ZFIN;Acc:ZDB-GENE-070810-2]
12. cacna2d3 ENSDARG00000078760 211 3.284 0.791 0.879 - - - 0.813 0.801 - - calcium channel, voltage dependent, alpha2/delta subunit 3 [Source:ZFIN;Acc:ZDB-GENE-030616-133]
13. zic4 ENSDARG00000031307 1228 3.272 0.786 0.731 - - - 0.847 0.908 - - zic family member 4 [Source:ZFIN;Acc:ZDB-GENE-040622-4]
14. nadl1.1 1200 3.258 0.795 0.785 - - - 0.702 0.976 - - neural adhesion molecule L1.1, transcript variant X1
15. nmnat2 ENSDARG00000004580 370 3.257 0.855 0.791 - - - 0.753 0.858 - - nicotinamide nucleotide adenylyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8201]
16. chrnb3a ENSDARG00000052764, ENSDARG00000112769 139 3.253 0.709 0.831 - - - 0.831 0.882 - - cholinergic receptor, nicotinic, beta polypeptide 3a [Source:ZFIN;Acc:ZDB-GENE-040108-1]
17. si:ch73-21g5.7 ENSDARG00000093156 9412 3.248 0.726 0.729 - - - 0.853 0.940 - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
18. CABZ01065506.1 CABZ01065506.1 204 3.218 0.752 0.754 - - - 0.823 0.889 - -
19. slc1a3a ENSDARG00000104431 9888 3.213 0.805 0.710 - - - 0.831 0.867 - - solute carrier family 1 (glial high affinity glutamate transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2159]
20. myt1b ENSDARG00000102879 5411 3.111 0.718 0.753 - - - 0.753 0.887 - - myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
21. stmn2b ENSDARG00000070537 1586 3.087 0.802 0.763 - - - 0.800 0.722 - - stathmin 2b [Source:ZFIN;Acc:ZDB-GENE-050522-207]
22. rfx4 ENSDARG00000026395, ENSDARG00000116861 2047 2.977 0.706 0.714 - - - 0.781 0.776 - - regulatory factor X, 4 [Source:ZFIN;Acc:ZDB-GENE-040909-2]
23. cnrip1a ENSDARG00000091683 1491 2.819 - 0.977 - - - 0.908 0.934 - - cannabinoid receptor interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-126]
24. nptx1l ENSDARG00000074671 569 2.744 0.903 - - - - 0.943 0.898 - - neuronal pentraxin 1 like [Source:ZFIN;Acc:ZDB-GENE-040426-2418]
25. dpysl5a ENSDARG00000011141 1827 2.708 - 0.909 - - - 0.884 0.915 - - dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
26. atpv0e2 ENSDARG00000059057 585 2.704 0.927 - - - - 0.881 0.896 - - ATPase H+ transporting V0 subunit e2 [Source:ZFIN;Acc:ZDB-GENE-050522-135]
27. SNAP91 ENSDARG00000098809 556 2.691 - 0.907 - - - 0.837 0.947 - - synaptosomal-associated protein 91 [Source:ZFIN;Acc:ZDB-GENE-100422-6]
28. cntn4 ENSDARG00000098161, ENSDARG00000109387 437 2.688 0.829 0.921 - - - - 0.938 - - contactin 4 [Source:ZFIN;Acc:ZDB-GENE-060929-776]
29. C7H4orf48 C7H4orf48 1455 2.661 0.866 - - - - 0.870 0.925 - -
30. hpca ENSDARG00000018397, ENSDARG00000110115 3866 2.658 0.846 - - - - 0.927 0.885 - - hippocalcin [Source:ZFIN;Acc:ZDB-GENE-040426-1683]
31. eno2 ENSDARG00000014287 2162 2.657 0.854 - - - - 0.864 0.939 - - enolase 2 [Source:ZFIN;Acc:ZDB-GENE-040704-27]
32. lhx5 ENSDARG00000057936 785 2.657 0.783 - - - - 0.921 0.953 - - LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]
33. st6gal1 ENSDARG00000044514 142 2.655 0.801 - - - - 0.902 0.952 - - ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 [Source:ZFIN;Acc:ZDB-GENE-060322-3]
34. stmn2a ENSDARG00000033234 2272 2.652 0.863 - - - - 0.887 0.902 - - stathmin 2a [Source:ZFIN;Acc:ZDB-GENE-041010-85]
35. GADD45G GADD45G 382 2.638 0.895 0.754 - - - - 0.989 - -
36. syt11a ENSDARG00000057913 1145 2.638 0.813 - - - - 0.872 0.953 - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
37. dpysl4 ENSDARG00000103490 534 2.635 0.878 - - - - 0.839 0.918 - - dihydropyrimidinase-like 4 [Source:ZFIN;Acc:ZDB-GENE-050720-3]
38. stmn1b ENSDARG00000033655 9491 2.635 0.775 - - - - 0.933 0.927 - - stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
39. SV2B SV2B 208 2.628 0.888 - - - - 0.829 0.911 - -
40. vsnl1a ENSDARG00000023228 1584 2.625 - 0.892 - - - 0.883 0.850 - - visinin-like 1a [Source:ZFIN;Acc:ZDB-GENE-041001-211]
41. slc6a5_1 ENSDARG00000067964, ENSDARG00000111378 1111 2.623 0.852 - - - - 0.863 0.908 - - solute carrier family 6 (neurotransmitter transporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-050105-2]
42. bsk146 ENSDARG00000099069 274 2.616 - 0.754 - - - 0.945 0.917 - - brain specific kinase 146 [Source:ZFIN;Acc:ZDB-GENE-060313-3]
43. gabra5 ENSDARG00000070730 156 2.611 0.850 - - - - 0.831 0.930 - - gamma-aminobutyric acid (GABA) A receptor, alpha 5 [Source:ZFIN;Acc:ZDB-GENE-081104-30]
44. cbln1 ENSDARG00000057296 165 2.602 0.803 - - - - 0.837 0.962 - - cerebellin 1 precursor [Source:ZFIN;Acc:ZDB-GENE-040718-226]
45. SKOR2 SKOR2 1041 2.597 0.836 0.915 - - - - 0.846 - -
46. syn2a ENSDARG00000045945 434 2.595 0.721 - - - - 0.902 0.972 - - synapsin IIa [Source:ZFIN;Acc:ZDB-GENE-040718-341]
47. slc32a1 ENSDARG00000059775 1092 2.594 - 0.850 - - - 0.852 0.892 - - solute carrier family 32 (GABA vesicular transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-061201-1]
48. CLIP3 ENSDARG00000054456 734 2.594 0.812 - - - - 0.850 0.932 - - CAP-GLY domain containing linker protein 3 [Source:ZFIN;Acc:ZDB-GENE-131127-193]
49. sypa ENSDARG00000042974, ENSDARG00000110528 3217 2.594 0.798 - - - - 0.872 0.924 - - synaptophysin a [Source:ZFIN;Acc:ZDB-GENE-031104-2]
50. zgc:194665 ENSDARG00000004577 136 2.589 0.878 0.754 - - - - 0.957 - - zgc:194665 [Source:ZFIN;Acc:ZDB-GENE-080722-38]
51. MAP1A MAP1A 847 2.589 0.907 - - - - 0.821 0.861 - -
52. snap25a ENSDARG00000020609 4537 2.586 0.844 - - - - 0.818 0.924 - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
53. mapk12b ENSDARG00000006409 2246 2.585 - 0.788 - - - 0.861 0.936 - - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
54. pcdh1gc5 ENSDARG00000104826 10052 2.584 0.766 - - - - 0.847 0.971 - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
55. nrn1a ENSDARG00000071860 1311 2.582 0.824 - - - - 0.865 0.893 - - neuritin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-212]
56. nxph1 ENSDARG00000033447 182 2.581 0.756 - - - - 0.880 0.945 - - neurexophilin 1 [Source:ZFIN;Acc:ZDB-GENE-040718-231]
57. lmo3 ENSDARG00000008720, ENSDARG00000114518 4773 2.57 - 0.916 - - - 0.856 0.798 - - LIM domain only 3 [Source:ZFIN;Acc:ZDB-GENE-050522-201]
58. spock2 ENSDARG00000075393 791 2.567 0.791 - - - - 0.897 0.879 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 [Source:ZFIN;Acc:ZDB-GENE-090312-170]
59. zgc:158291 ENSDARG00000044375, ENSDARG00000111929 621 2.565 0.831 0.910 - - - 0.824 - - - zgc:158291 [Source:ZFIN;Acc:ZDB-GENE-061215-70]
60. lrrc4.1 ENSDARG00000069402 323 2.563 - 0.786 - - - 0.827 0.950 - - leucine rich repeat containing 4.1 [Source:ZFIN;Acc:ZDB-GENE-041210-129]
61. KCNIP4 ENSDARG00000088100 86 2.562 - 0.754 - - - 0.843 0.965 - - potassium voltage-gated channel interacting protein 4 [Source:HGNC Symbol;Acc:HGNC:30083]
62. mllt11 ENSDARG00000071026 2518 2.561 0.824 - - - - 0.819 0.918 - - MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
63. necap1 ENSDARG00000020798 612 2.561 0.766 - - - - 0.830 0.965 - - NECAP endocytosis associated 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1682]
64. sox21b ENSDARG00000008540 1460 2.556 0.763 0.868 - - - - 0.925 - - SRY (sex determining region Y)-box 21b [Source:ZFIN;Acc:ZDB-GENE-040429-1]
65. slc1a2b ENSDARG00000102453 3136 2.556 0.899 - - - - 0.795 0.862 - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
66. rtn1b ENSDARG00000021143 1682 2.554 0.840 - - - - 0.871 0.843 - - reticulon 1b [Source:ZFIN;Acc:ZDB-GENE-030710-3]
67. zic3 ENSDARG00000071497 1448 2.551 0.773 - - - - 0.874 0.904 - - zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030708-2]
68. celf4 ENSDARG00000070045 1537 2.549 0.809 0.780 - - - - 0.960 - - CUGBP, Elav-like family member 4 [Source:ZFIN;Acc:ZDB-GENE-040718-300]
69. scg2b ENSDARG00000038574 345 2.548 0.851 - - - - 0.894 0.803 - - secretogranin II (chromogranin C), b [Source:ZFIN;Acc:ZDB-GENE-061103-160]
70. mdkb ENSDARG00000020708 5393 2.542 0.780 - - - - 0.907 0.855 - - midkine b [Source:ZFIN;Acc:ZDB-GENE-010131-6]
71. calb2a ENSDARG00000041062, ENSDARG00000110220 459 2.538 - 0.754 - - - 0.870 0.914 - - calbindin 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1677]
72. adarb1a ENSDARG00000041609 476 2.537 0.752 - - - - 0.898 0.887 - - adenosine deaminase, RNA-specific, B1a [Source:ZFIN;Acc:ZDB-GENE-000627-2]
73. ppp3ca ENSDARG00000004988 615 2.536 0.791 - - - - 0.875 0.870 - - protein phosphatase 3, catalytic subunit, alpha isozyme [Source:ZFIN;Acc:ZDB-GENE-091113-24]
74. rap2ip rap2ip 681 2.535 0.809 - - - - 0.773 0.953 - -
75. neurod4 ENSDARG00000003469, ENSDARG00000117149 1732 2.531 0.805 0.802 - - - - 0.924 - - neuronal differentiation 4 [Source:ZFIN;Acc:ZDB-GENE-030730-1]
76. atl1 ENSDARG00000060481 251 2.526 0.787 - - - - 0.922 0.817 - - atlastin GTPase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8003]
77. si:ch211-11c15.3 si:ch211-11c15.3 1279 2.525 0.815 - - - - 0.885 0.825 - -
78. thsd7ba ENSDARG00000095022 231 2.524 - 0.842 - - - 0.923 0.759 - - thrombospondin, type I, domain containing 7Ba [Source:ZFIN;Acc:ZDB-GENE-070621-2]
79. map7d2a ENSDARG00000068480 513 2.523 0.799 0.832 - - - - 0.892 - - MAP7 domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-060526-150]
80. sncgb ENSDARG00000109715 1014 2.513 0.759 - - - - 0.857 0.897 - - synuclein, gamma b (breast cancer-specific protein 1) [Source:ZFIN;Acc:ZDB-GENE-050522-235]
81. adcyap1b ENSDARG00000027740 1539 2.509 0.821 - - - - 0.837 0.851 - - adenylate cyclase activating polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-041010-89]
82. ttll7 ENSDARG00000062973 519 2.508 0.901 - - - - 0.872 0.735 - - tubulin tyrosine ligase-like family, member 7 [Source:ZFIN;Acc:ZDB-GENE-070112-2112]
83. phyhipla ENSDARG00000003998, ENSDARG00000115785 262 2.508 0.749 - - - - 0.905 0.854 - - phytanoyl-CoA 2-hydroxylase interacting protein-like a [Source:ZFIN;Acc:ZDB-GENE-061215-64]
84. gap43 ENSDARG00000099744 4114 2.507 0.797 - - - - 0.796 0.914 - - growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
85. sh3gl2 sh3gl2 1305 2.506 0.846 - - - - 0.790 0.870 - -
86. dnm1b ENSDARG00000009281 219 2.506 0.896 0.750 - - - - 0.860 - - dynamin 1b [Source:ZFIN;Acc:ZDB-GENE-100920-3]
87. TUBB2A TUBB2A 142 2.505 0.847 - - - - 0.780 0.878 - -
88. tuba1c ENSDARG00000055216 8384 2.505 0.763 - - - - 0.790 0.952 - - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
89. scdb ENSDARG00000030265 271 2.502 0.764 0.875 - - - 0.863 - - - stearoyl-CoA desaturase b [Source:ZFIN;Acc:ZDB-GENE-050522-12]
90. syt9a ENSDARG00000003994 298 2.502 0.825 0.754 - - - 0.923 - - - synaptotagmin IXa [Source:ZFIN;Acc:ZDB-GENE-031002-18]
91. cadm3 ENSDARG00000057013 1545 2.501 0.836 - - - - 0.805 0.860 - - cell adhesion molecule 3 [Source:ZFIN;Acc:ZDB-GENE-060512-196]
92. plp1a ENSDARG00000103732 3544 2.498 0.718 - - - - 0.822 0.958 - - proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
93. atp2b3a ENSDARG00000043474, ENSDARG00000112865 914 2.498 0.788 - - - - 0.808 0.902 - - ATPase plasma membrane Ca2+ transporting 3a [Source:ZFIN;Acc:ZDB-GENE-040718-174]
94. dpysl2b ENSDARG00000032083, ENSDARG00000109782 3487 2.488 - 0.803 - - - 0.813 0.872 - - dihydropyrimidinase-like 2b [Source:ZFIN;Acc:ZDB-GENE-031105-1]
95. camta1a ENSDARG00000077428, ENSDARG00000116922 176 2.483 - 0.754 - - - 0.784 0.945 - - calmodulin binding transcription activator 1a [Source:ZFIN;Acc:ZDB-GENE-090312-183]
96. cplx2l ENSDARG00000018997 3975 2.482 0.840 0.726 - - - - 0.916 - - complexin 2, like [Source:ZFIN;Acc:ZDB-GENE-040718-160]
97. rab3ab ENSDARG00000043835 1267 2.481 0.755 - - - - 0.780 0.946 - - RAB3A, member RAS oncogene family, b [Source:ZFIN;Acc:ZDB-GENE-041210-268]
98. sox2 ENSDARG00000070913 2763 2.479 - 0.701 - - - 0.864 0.914 - - SRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
99. ndrg4 ENSDARG00000103937 1234 2.477 0.825 - - - - 0.767 0.885 - - NDRG family member 4 [Source:ZFIN;Acc:ZDB-GENE-060512-226]
100. add2 ENSDARG00000074581 1402 2.477 0.811 - - - - 0.751 0.915 - - adducin 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-080718-4]

There are 2397 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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