Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for upf2

Gene Name Gene ID Reads Annotation
upf2 55 UPF2 regulator of nonsense transcripts homolog (yeast)










Genes with expression patterns similar to upf2

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. upf2 55 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 UPF2 regulator of nonsense transcripts homolog (yeast)
2. phox2a ENSDARG00000007406 470 1.761 0.930 - - - - 0.831 - - - paired-like homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-000223-14]
3. kitlgb ENSDARG00000058042, ENSDARG00000116557 63 1.696 0.904 0.792 - - - - - - - kit ligand b [Source:ZFIN;Acc:ZDB-GENE-070424-2]
4. BX571811.1 ENSDARG00000105621 25 1.686 0.886 - - - 0.800 - - - -
5. parp6a ENSDARG00000042703 112 1.684 0.807 0.877 - - - - - - - poly (ADP-ribose) polymerase family, member 6a [Source:ZFIN;Acc:ZDB-GENE-040718-272]
6. grtp1b ENSDARG00000030269 24 1.678 0.886 0.792 - - - - - - - growth hormone regulated TBC protein 1b [Source:ZFIN;Acc:ZDB-GENE-050417-346]
7. CU855821.2 CU855821.2 21 1.659 0.886 - - - - - 0.773 - -
8. kcnj8 ENSDARG00000045589 92 1.642 0.855 0.787 - - - - - - - potassium inwardly-rectifying channel, subfamily J, member 8 [Source:ZFIN;Acc:ZDB-GENE-060308-1]
9. epha6 ENSDARG00000022971 52 1.633 0.855 0.778 - - - - - - - eph receptor A6 [Source:ZFIN;Acc:ZDB-GENE-090311-43]
10. ntpcr ENSDARG00000021853 104 1.592 0.848 0.744 - - - - - - - nucleoside-triphosphatase, cancer-related [Source:ZFIN;Acc:ZDB-GENE-040801-200]
11. GBE1 GBE1 12 1.584 - 0.778 - - 0.806 - - - -
12. si:ch211-117m22.2 si:ch211-117m22.2 60 1.535 - - - - - 0.739 0.796 - -
13. ighmbp2 ENSDARG00000069274, ENSDARG00000113605 60 1.533 - - - - 0.755 0.778 - - - immunoglobulin mu DNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-050419-258]
14. LRRC2 LRRC2 23 1.532 - 0.792 - - - - - - 0.740
15. wfs1b ENSDARG00000074617 69 1.516 - 0.792 - - - 0.724 - - - Wolfram syndrome 1b (wolframin) [Source:ZFIN;Acc:ZDB-GENE-050809-19]
16. RNF219 ENSDARG00000090904 176 1.509 - 0.708 - - - 0.801 - - - ring finger protein 219 [Source:HGNC Symbol;Acc:HGNC:20308]
17. peli1a ENSDARG00000091592 119 1.499 0.740 - - - - - 0.759 - - pellino E3 ubiquitin protein ligase 1a [Source:ZFIN;Acc:ZDB-GENE-110310-6]
18. mipep ENSDARG00000055344 63 1.49 0.743 - - - - - 0.747 - - mitochondrial intermediate peptidase [Source:ZFIN;Acc:ZDB-GENE-060503-662]
19. hsd17b7_1 ENSDARG00000088140 36 1.476 0.752 - - - - 0.724 - - - hydroxysteroid (17-beta) dehydrogenase 7 [Source:ZFIN;Acc:ZDB-GENE-061013-378]
20. si:dkey-7o6.3 si:dkey-7o6.3 207 1.453 0.748 0.705 - - - - - - -
21. ccdc136b ENSDARG00000057921, ENSDARG00000075513 387 1.429 - - - - - 0.714 0.715 - - coiled-coil domain containing 136b [Source:ZFIN;Acc:ZDB-GENE-081104-244]
22. zgc:73226 ENSDARG00000023759 120 1 - - - - - 1.000 - - - zgc:73226 [Source:ZFIN;Acc:ZDB-GENE-050703-8]
23. zgc:171242 ENSDARG00000078551 12 1 - - - - - 1.000 - - - zgc:171242 [Source:ZFIN;Acc:ZDB-GENE-071004-79]
24. adprhl1 ENSDARG00000041589 34 1 - - - - - 1.000 - - - ADP-ribosylhydrolase like 1 [Source:ZFIN;Acc:ZDB-GENE-041010-126]
25. avpr2aa ENSDARG00000007436 43 1 - - - - - 1.000 - - - arginine vasopressin receptor 2a, duplicate a [Source:ZFIN;Acc:ZDB-GENE-090313-344]
26. ropn1l ENSDARG00000058370, ENSDARG00000114122 57 1 - - - - - - 1.000 - - rhophilin associated tail protein 1-like [Source:ZFIN;Acc:ZDB-GENE-040724-235]
27. pde3a ENSDARG00000004227 6 0.955 0.955 - - - - - - - - phosphodiesterase 3A, cGMP-inhibited [Source:ZFIN;Acc:ZDB-GENE-041210-23]
28. RNF207 RNF207 9 0.955 0.955 - - - - - - - -
29. abcg1 ENSDARG00000063475 97 0.955 - 0.955 - - - - - - - ATP-binding cassette, sub-family G (WHITE), member 1 [Source:ZFIN;Acc:ZDB-GENE-070424-84]
30. si:ch211-105d18.6 si:ch211-105d18.6 59 0.955 0.955 - - - - - - - -
31. litaf ENSDARG00000103483 217 0.954 0.954 - - - - - - - - lipopolysaccharide-induced TNF factor [Source:ZFIN;Acc:ZDB-GENE-040704-23]
32. PRR5 PRR5 630 0.952 - 0.952 - - - - - - -
33. si:ch73-7i4.2 ENSDARG00000093998 154 0.95 - - - - - - 0.950 - - si:ch73-7i4.2 [Source:ZFIN;Acc:ZDB-GENE-060810-137]
34. SNX19 SNX19 350 0.949 - 0.949 - - - - - - -
35. cldnk ENSDARG00000042357 103 0.946 - 0.946 - - - - - - - claudin k [Source:ZFIN;Acc:ZDB-GENE-040801-201]
36. arl3l2 ENSDARG00000015404 39 0.946 - 0.946 - - - - - - - ADP-ribosylation factor-like 3, like 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1678]
37. dnajb2 ENSDARG00000058644 30 0.943 - - - - - 0.943 - - - DnaJ (Hsp40) homolog, subfamily B, member 2 [Source:ZFIN;Acc:ZDB-GENE-061013-537]
38. rad51b ENSDARG00000037046 137 0.937 - 0.937 - - - - - - - RAD51 paralog B [Source:ZFIN;Acc:ZDB-GENE-040426-2750]
39. atg9b ENSDARG00000055292 155 0.932 - 0.932 - - - - - - - autophagy related 9B [Source:ZFIN;Acc:ZDB-GENE-091111-3]
40. nrip1a ENSDARG00000068965 684 0.932 - 0.932 - - - - - - - nuclear receptor interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-040723-8]
41. TIMP4 TIMP4 599 0.93 0.930 - - - - - - - -
42. SUSD3 SUSD3 64 0.927 0.927 - - - - - - - -
43. BX470149.1 BX470149.1 235 0.927 - 0.927 - - - - - - -
44. fam45a ENSDARG00000062965, ENSDARG00000115900 14 0.925 - - - - 0.925 - - - - family with sequence similarity 45, member A [Source:ZFIN;Acc:ZDB-GENE-030131-3548]
45. ATL2 ENSDARG00000057719, ENSDARG00000113378, ENSDARG00000113487 1987 0.925 - 0.925 - - - - - - - atlastin GTPase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6505]
46. MAL_1 MAL_1 200 0.922 - 0.922 - - - - - - -
47. si:rp71-15d4.6 si:rp71-15d4.6 95 0.922 - - - - - 0.922 - - -
48. mrps22_1 ENSDARG00000018073, ENSDARG00000115927 104 0.921 - 0.921 - - - - - - - mitochondrial ribosomal protein S22 [Source:ZFIN;Acc:ZDB-GENE-070615-31]
49. hif1aa ENSDARG00000006181 109 0.917 0.917 - - - - - - - - hypoxia inducible factor 1 subunit alpha a [Source:ZFIN;Acc:ZDB-GENE-080917-55]
50. si:dkey-97l20.2 si:dkey-97l20.2 167 0.913 - 0.913 - - - - - - -
51. RHOBTB1 ENSDARG00000079468 189 0.912 - 0.912 - - - - - - - Rho related BTB domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-130530-871]
52. cd40 ENSDARG00000054968 90 0.909 - - - - - 0.909 - - - CD40 molecule, TNF receptor superfamily member 5 [Source:ZFIN;Acc:ZDB-GENE-090313-95]
53. chrng ENSDARG00000086647 676 0.908 - - - - - - 0.908 - - cholinergic receptor, nicotinic, gamma [Source:ZFIN;Acc:ZDB-GENE-030131-3805]
54. psmb5 ENSDARG00000075445, ENSDARG00000111880 126 0.908 - - - - - - 0.908 - - proteasome subunit beta 5 [Source:ZFIN;Acc:ZDB-GENE-990415-215]
55. stx12l ENSDARG00000044605 99 0.907 - - - - - 0.907 - - - syntaxin 12, like [Source:ZFIN;Acc:ZDB-GENE-110715-1]
56. TMEM100 TMEM100 258 0.903 0.903 - - - - - - - -
57. dcaf15 ENSDARG00000077790 1039 0.903 0.903 - - - - - - - - DDB1 and CUL4 associated factor 15 [Source:ZFIN;Acc:ZDB-GENE-030131-2374]
58. tmem101 ENSDARG00000114508 494 0.903 - 0.903 - - - - - - - transmembrane protein 101 [Source:ZFIN;Acc:ZDB-GENE-121214-289]
59. NOG NOG 324 0.903 0.903 - - - - - - - -
60. CT583625.2 ENSDARG00000094770 57 0.901 - - - - - - 0.901 - - uncharacterized LOC108181196 [Source:NCBI gene;Acc:108181196]
61. nr4a2b ENSDARG00000044532 103 0.894 0.894 - - - - - - - - nuclear receptor subfamily 4, group A, member 2b [Source:ZFIN;Acc:ZDB-GENE-040718-103]
62. eif4e1b ENSDARG00000014565 12 0.893 0.893 - - - - - - - - eukaryotic translation initiation factor 4E family member 1B [Source:ZFIN;Acc:ZDB-GENE-980526-127]
63. CR848706.1 CR848706.1 128 0.893 0.893 - - - - - - - -
64. zgc:112083 ENSDARG00000037405 306 0.893 - 0.893 - - - - - - - zgc:112083 [Source:ZFIN;Acc:ZDB-GENE-050417-284]
65. adra2da ENSDARG00000091277 173 0.887 0.887 - - - - - - - - adrenergic, alpha-2D-, receptor a [Source:ZFIN;Acc:ZDB-GENE-021010-4]
66. zgc:112437 ENSDARG00000009215 50 0.887 - 0.887 - - - - - - - zgc:112437 [Source:ZFIN;Acc:ZDB-GENE-050417-293]
67. si:dkey-176f19.2 si:dkey-176f19.2 6 0.886 0.886 - - - - - - - -
68. meox2b ENSDARG00000061818, ENSDARG00000116206 62 0.886 0.886 - - - - - - - - mesenchyme homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-060503-853]
69. KCNS1 KCNS1 24 0.886 0.886 - - - - - - - -
70. frmd4bb ENSDARG00000076496 18 0.886 0.886 - - - - - - - - FERM domain containing 4Bb [Source:ZFIN;Acc:ZDB-GENE-100921-74]
71. NAT14 ENSDARG00000115349 21 0.886 0.886 - - - - - - - - N-acetyltransferase 14 (GCN5-related, putative) [Source:ZFIN;Acc:ZDB-GENE-060825-15]
72. scgn ENSDARG00000058732, ENSDARG00000115991 119 0.886 0.886 - - - - - - - - secretagogin, EF-hand calcium binding protein [Source:ZFIN;Acc:ZDB-GENE-041010-82]
73. CU550716.4 CU550716.4 14 0.886 0.886 - - - - - - - -
74. casd1 ENSDARG00000023900 12 0.886 0.886 - - - - - - - - CAS1 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060503-329]
75. hsd17b1 ENSDARG00000027469 11 0.886 0.886 - - - - - - - - hydroxysteroid (17-beta) dehydrogenase 1 [Source:ZFIN;Acc:ZDB-GENE-040901-5]
76. fes ENSDARG00000011449 46 0.886 0.886 - - - - - - - - FES proto-oncogene, tyrosine kinase [Source:ZFIN;Acc:ZDB-GENE-100812-10]
77. tnfsf10l3 ENSDARG00000032746 37 0.886 0.886 - - - - - - - - tumor necrosis factor (ligand) superfamily, member 10 like 3 [Source:ZFIN;Acc:ZDB-GENE-070606-1]
78. cyp3c1l2 cyp3c1l2 53 0.886 0.886 - - - - - - - -
79. agmat ENSDARG00000059700 9 0.886 0.886 - - - - - - - - agmatine ureohydrolase (agmatinase) [Source:ZFIN;Acc:ZDB-GENE-060929-696]
80. btr09 ENSDARG00000054805, ENSDARG00000115798 20 0.886 0.886 - - - - - - - - bloodthirsty-related gene family, member 9 [Source:ZFIN;Acc:ZDB-GENE-080722-46]
81. pax5 ENSDARG00000037383 319 0.886 0.886 - - - - - - - - paired box 5 [Source:ZFIN;Acc:ZDB-GENE-001030-2]
82. hsc70 ENSDARG00000012381 961 0.886 0.886 - - - - - - - - heat shock cognate 70 [Source:ZFIN;Acc:ZDB-GENE-040426-1221]
83. si:dkey-30j22.3 si:dkey-30j22.3 17 0.886 0.886 - - - - - - - -
84. KSR1 KSR1 8 0.886 0.886 - - - - - - - -
85. TGIF2 TGIF2 22 0.886 0.886 - - - - - - - -
86. CNGB3 CNGB3 7 0.886 0.886 - - - - - - - -
87. si:dkey-222f2.3 si:dkey-222f2.3 8 0.886 0.886 - - - - - - - -
88. hapln2 ENSDARG00000003903 13 0.886 0.886 - - - - - - - - hyaluronan and proteoglycan link protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8089]
89. si:dkey-20i20.12 si:dkey-20i20.12 7 0.886 0.886 - - - - - - - -
90. hcar1-4 ENSDARG00000087084, ENSDARG00000113450 27 0.886 0.886 - - - - - - - - hydroxycarboxylic acid receptor 1-4 [Source:ZFIN;Acc:ZDB-GENE-111111-10]
91. plxdc1 ENSDARG00000078417 41 0.886 0.886 - - - - - - - - plexin domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-081104-391]
92. DNHD1 DNHD1 4 0.886 0.886 - - - - - - - -
93. alox5 alox5 406 0.886 0.886 - - - - - - - -
94. pcdh2g12 5 0.886 0.886 - - - - - - - - protocadherin 2 gamma 12
95. ENDOD1_7 ENDOD1_7 33 0.886 0.886 - - - - - - - -
96. tlx1 ENSDARG00000003965 67 0.886 0.886 - - - - - - - - T cell leukemia homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-021021-2]
97. si:ch211-207m11.2 si:ch211-207m11.2 63 0.886 0.886 - - - - - - - -
98. PRKCA ENSDARG00000099841 2 0.886 0.886 - - - - - - - - protein kinase C alpha [Source:HGNC Symbol;Acc:HGNC:9393]
99. CABZ01085069.1 CABZ01085069.1 2 0.886 0.886 - - - - - - - -
100. SLC15A5 ENSDARG00000089974 18 0.886 0.886 - - - - - - - - solute carrier family 15 member 5 [Source:HGNC Symbol;Acc:HGNC:33455]

There are 706 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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