Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for upf1

Gene Name Gene ID Reads Annotation
upf1 ENSDARG00000016302 1003 upf1 regulator of nonsense transcripts homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-2836]










Genes with expression patterns similar to upf1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. upf1 ENSDARG00000016302 1003 8 1.000 1.000 1.000 1.000 1.000 - 1.000 1.000 1.000 upf1 regulator of nonsense transcripts homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-2836]
2. znf654 ENSDARG00000079350 978 2.226 - 0.778 - - - - 0.740 0.708 - zinc finger protein 654 [Source:ZFIN;Acc:ZDB-GENE-030131-1423]
3. tubgcp3 ENSDARG00000029133, ENSDARG00000116225 525 1.571 - 0.804 - - - - 0.767 - - tubulin, gamma complex associated protein 3 [Source:ZFIN;Acc:ZDB-GENE-030616-538]
4. slc35d2 ENSDARG00000089837 1606 1.537 - 0.825 - - - - 0.712 - - solute carrier family 35 (UDP-GlcNAc/UDP-glucose transporter), member D2 [Source:ZFIN;Acc:ZDB-GENE-080125-1]
5. tspan14 ENSDARG00000055938, ENSDARG00000117111 4518 1.515 - 0.767 - - - - 0.748 - - tetraspanin 14 [Source:ZFIN;Acc:ZDB-GENE-060825-329]
6. syf2 ENSDARG00000004706 2463 1.498 - - - - - - 0.741 0.757 - SYF2 pre-mRNA-splicing factor [Source:ZFIN;Acc:ZDB-GENE-040801-170]
7. BX511263.1_1 BX511263.1_1 368 1.481 - 0.779 - - - - - 0.702 -
8. hpcal4 ENSDARG00000070491 365 1.441 - - - - - - 0.722 0.719 - hippocalcin like 4 [Source:ZFIN;Acc:ZDB-GENE-060503-307]
9. KIF20B KIF20B 800 1.429 - - - - - - 0.726 0.703 -
10. mycbp ENSDARG00000091001 1511 0.873 - - - - - - 0.873 - - c-myc binding protein [Source:ZFIN;Acc:ZDB-GENE-060331-97]
11. nol7 ENSDARG00000075795 1559 0.865 - - - - - - 0.865 - - nucleolar protein 7 [Source:ZFIN;Acc:ZDB-GENE-030131-9100]
12. rnf44 ENSDARG00000068582 1612 0.865 - 0.865 - - - - - - - ring finger protein 44 [Source:ZFIN;Acc:ZDB-GENE-060929-604]
13. ncaph ENSDARG00000061468, ENSDARG00000113773 1401 0.86 - - - - - - 0.860 - - non-SMC condensin I complex, subunit H [Source:ZFIN;Acc:ZDB-GENE-070112-652]
14. map9 ENSDARG00000037276, ENSDARG00000115648 581 0.858 - - - - - - 0.858 - - microtubule-associated protein 9 [Source:ZFIN;Acc:ZDB-GENE-080225-36]
15. polr3k ENSDARG00000037835 1552 0.853 - 0.853 - - - - - - - polymerase (RNA) III (DNA directed) polypeptide K [Source:ZFIN;Acc:ZDB-GENE-040718-291]
16. frs2b ENSDARG00000037353 544 0.848 - - - - - - 0.848 - - fibroblast growth factor receptor substrate 2b [Source:ZFIN;Acc:ZDB-GENE-040718-406]
17. acot7 ENSDARG00000018653 693 0.848 - - - - - - 0.848 - - acyl-CoA thioesterase 7 [Source:ZFIN;Acc:ZDB-GENE-040912-42]
18. C25H7orf60 C25H7orf60 699 0.847 - - - - - - 0.847 - -
19. rab11fip1b ENSDARG00000036462 466 0.845 - 0.845 - - - - - - - RAB11 family interacting protein 1 (class I) b [Source:ZFIN;Acc:ZDB-GENE-091204-322]
20. hoxc6b ENSDARG00000101954 967 0.844 - - - - - - 0.844 - - homeobox C6b [Source:ZFIN;Acc:ZDB-GENE-000822-1]
21. nr2f6a ENSDARG00000003607 4779 0.841 - - - - - - 0.841 - - nuclear receptor subfamily 2, group F, member 6a [Source:ZFIN;Acc:ZDB-GENE-030131-4362]
22. timm50 ENSDARG00000031098, ENSDARG00000109900 988 0.841 - - - - - - 0.841 - - translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040426-1618]
23. itga3a ENSDARG00000037917 219 0.84 - - - - - - 0.840 - - integrin, alpha 3a [Source:ZFIN;Acc:ZDB-GENE-090805-3]
24. CAMK2G CAMK2G 3537 0.838 - 0.838 - - - - - - -
25. RNF169 ENSDARG00000042825 727 0.838 - - - - - - 0.838 - - ring finger protein 169 [Source:ZFIN;Acc:ZDB-GENE-030131-4336]
26. med22 ENSDARG00000014148 1307 0.837 - 0.837 - - - - - - - mediator complex subunit 22 [Source:ZFIN;Acc:ZDB-GENE-040625-156]
27. clasrp ENSDARG00000061742, ENSDARG00000116329 1650 0.834 - 0.834 - - - - - - - CLK4-associating serine/arginine rich protein [Source:ZFIN;Acc:ZDB-GENE-060503-837]
28. trim13 ENSDARG00000010010, ENSDARG00000110876, ENSDARG00000114862 767 0.833 - - - - - - 0.833 - - tripartite motif containing 13 [Source:ZFIN;Acc:ZDB-GENE-050522-516]
29. cks2 ENSDARG00000071410, ENSDARG00000116198 966 0.833 - - - - - - 0.833 - - CDC28 protein kinase regulatory subunit 2 [Source:ZFIN;Acc:ZDB-GENE-050208-508]
30. nav3 ENSDARG00000005476 1012 0.833 - 0.833 - - - - - - - neuron navigator 3 [Source:ZFIN;Acc:ZDB-GENE-021205-1]
31. pak2b ENSDARG00000018476 4331 0.832 - 0.832 - - - - - - - p21 protein (Cdc42/Rac)-activated kinase 2b [Source:ZFIN;Acc:ZDB-GENE-030131-3759]
32. rnf26 ENSDARG00000074074 762 0.832 - - - - - - 0.832 - - ring finger protein 26 [Source:ZFIN;Acc:ZDB-GENE-060727-1]
33. per2 ENSDARG00000034503 264 0.831 - 0.831 - - - - - - - period circadian clock 2 [Source:ZFIN;Acc:ZDB-GENE-011220-2]
34. kirrela 1170 0.83 - 0.830 - - - - - - - kin of IRRE like a, transcript variant X2
35. tmub1 ENSDARG00000038787 1012 0.828 - 0.828 - - - - - - - transmembrane and ubiquitin-like domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2504]
36. ryk ENSDARG00000007231 1611 0.827 - 0.827 - - - - - - - receptor-like tyrosine kinase [Source:ZFIN;Acc:ZDB-GENE-070209-277]
37. xpo7 ENSDARG00000005540, ENSDARG00000110221 4566 0.824 - - - - - - 0.824 - - exportin 7 [Source:ZFIN;Acc:ZDB-GENE-060628-2]
38. cramp1l cramp1l 700 0.822 - 0.822 - - - - - - -
39. eme1 ENSDARG00000076913 376 0.822 - 0.822 - - - - - - - essential meiotic structure-specific endonuclease 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3191]
40. fam102aa ENSDARG00000102566 903 0.822 - 0.822 - - - - - - - family with sequence similarity 102, member Aa [Source:ZFIN;Acc:ZDB-GENE-081104-233]
41. zgc:110626 ENSDARG00000053159 1124 0.82 - 0.820 - - - - - - - zgc:110626 [Source:ZFIN;Acc:ZDB-GENE-050417-447]
42. TRIP10 TRIP10 1079 0.82 - - - - - - 0.820 - -
43. arhgef4 ENSDARG00000012914 1464 0.819 - - - - - - 0.819 - - Rho guanine nucleotide exchange factor (GEF) 4 [Source:ZFIN;Acc:ZDB-GENE-070912-575]
44. ZNF337_25 ZNF337_25 1713 0.818 - 0.818 - - - - - - -
45. nsa2 ENSDARG00000007708 6329 0.817 - - - - - - 0.817 - - NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-488]
46. E2F6 E2F6 1271 0.815 - - - - - - 0.815 - -
47. ano5a ENSDARG00000015731 601 0.815 - 0.815 - - - - - - - anoctamin 5a [Source:ZFIN;Acc:ZDB-GENE-091013-2]
48. mybbp1a ENSDARG00000078214 2458 0.813 - - - - - - 0.813 - - MYB binding protein (P160) 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9864]
49. dusp8a ENSDARG00000009299 1302 0.812 - 0.812 - - - - - - - dual specificity phosphatase 8a [Source:ZFIN;Acc:ZDB-GENE-040426-1842]
50. timm10 ENSDARG00000069116 4459 0.812 - - - - - - 0.812 - - translocase of inner mitochondrial membrane 10 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040718-427]
51. kdm6bb ENSDARG00000056929 4807 0.81 - - - - - - 0.810 - - lysine (K)-specific demethylase 6B, b [Source:ZFIN;Acc:ZDB-GENE-040724-166]
52. cbx1a ENSDARG00000004189, ENSDARG00000110945 3297 0.81 - 0.810 - - - - - - - chromobox homolog 1a (HP1 beta homolog Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-4945]
53. sox18 ENSDARG00000058598 678 0.81 - 0.810 - - - - - - - SRY (sex determining region Y)-box 18 [Source:ZFIN;Acc:ZDB-GENE-080725-1]
54. lemd3 ENSDARG00000015824 2868 0.81 - - - - - - 0.810 - - LEM domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-030131-490]
55. rprd2a ENSDARG00000058089 743 0.809 - 0.809 - - - - - - - regulation of nuclear pre-mRNA domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-030131-6641]
56. b3gat2 ENSDARG00000030733 348 0.808 - - - - - - - 0.808 - beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S) [Source:ZFIN;Acc:ZDB-GENE-040801-191]
57. snx9b ENSDARG00000069302, ENSDARG00000116107 5673 0.808 - 0.808 - - - - - - - sorting nexin 9b [Source:ZFIN;Acc:ZDB-GENE-031118-50]
58. rnf175 ENSDARG00000037647 1233 0.808 - 0.808 - - - - - - - ring finger protein 175 [Source:ZFIN;Acc:ZDB-GENE-040426-1104]
59. hnrnpua ENSDARG00000015206 4012 0.808 - 0.808 - - - - - - - heterogeneous nuclear ribonucleoprotein Ua [Source:ZFIN;Acc:ZDB-GENE-030131-3731]
60. pptc7a ENSDARG00000011122 739 0.806 - 0.806 - - - - - - - PTC7 protein phosphatase homolog a [Source:ZFIN;Acc:ZDB-GENE-041114-74]
61. sema4ab ENSDARG00000062352 409 0.805 - - - - - - 0.805 - - sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ab [Source:ZFIN;Acc:ZDB-GENE-060503-363]
62. usp25 ENSDARG00000012314 734 0.803 - - - - - - - 0.803 - ubiquitin specific peptidase 25 [Source:ZFIN;Acc:ZDB-GENE-040426-2847]
63. ablim1a ENSDARG00000060149 228 0.803 - - - - - - - 0.803 - actin binding LIM protein 1a [Source:ZFIN;Acc:ZDB-GENE-080219-41]
64. SACM1L SACM1L 416 0.802 - 0.802 - - - - - - -
65. znf319 znf319 3027 0.801 - - - - - - 0.801 - -
66. lrrc32 ENSDARG00000040621 348 0.801 - 0.801 - - - - - - - leucine rich repeat containing 32 [Source:ZFIN;Acc:ZDB-GENE-090630-1]
67. dnajc5gb ENSDARG00000017687, ENSDARG00000111738 855 0.8 - 0.800 - - - - - - - DnaJ (Hsp40) homolog, subfamily C, member 5 gamma b [Source:ZFIN;Acc:ZDB-GENE-040426-1238]
68. zgc:101566 ENSDARG00000086342 363 0.8 - - - - - - 0.800 - - zgc:101566 [Source:ZFIN;Acc:ZDB-GENE-041010-73]
69. rbfox2 ENSDARG00000052182 6621 0.799 - 0.799 - - - - - - - RNA binding fox-1 homolog 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2464]
70. igf2bp2b ENSDARG00000099758, ENSDARG00000111268, ENSDARG00000116761 588 0.799 - 0.799 - - - - - - - insulin-like growth factor 2 mRNA binding protein 2b [Source:ZFIN;Acc:ZDB-GENE-060503-536]
71. sin3ab ENSDARG00000059812 2140 0.798 - - - - - - 0.798 - - SIN3 transcription regulator family member Ab [Source:ZFIN;Acc:ZDB-GENE-030131-2066]
72. RBM12B_1 RBM12B_1 1192 0.798 - - - - - - 0.798 - -
73. sptlc3 ENSDARG00000030743 596 0.798 - 0.798 - - - - - - - serine palmitoyltransferase, long chain base subunit 3 [Source:ZFIN;Acc:ZDB-GENE-041210-281]
74. galnt2 ENSDARG00000003829 891 0.798 - 0.798 - - - - - - - UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-041111-110]
75. rnf40 ENSDARG00000054201, ENSDARG00000114667 2440 0.797 - 0.797 - - - - - - - ring finger protein 40 [Source:ZFIN;Acc:ZDB-GENE-030131-6607]
76. alkbh4 ENSDARG00000052247 306 0.796 - - - - - - 0.796 - - alkB homolog 4, lysine demthylase [Source:ZFIN;Acc:ZDB-GENE-060526-275]
77. ppp4r2b ENSDARG00000053447 2506 0.796 - - - - - - 0.796 - - protein phosphatase 4, regulatory subunit 2b [Source:ZFIN;Acc:ZDB-GENE-030131-3008]
78. NFRKB ENSDARG00000091512 646 0.796 - 0.796 - - - - - - - nuclear factor related to kappaB binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-6419]
79. mrps10 ENSDARG00000045913 1453 0.794 - 0.794 - - - - - - - mitochondrial ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040914-39]
80. cdk12 ENSDARG00000063726 1220 0.794 - - - - - - - 0.794 - cyclin-dependent kinase 12 [Source:ZFIN;Acc:ZDB-GENE-081104-294]
81. gpx3 ENSDARG00000043342 101 0.794 - - - - - - 0.794 - - glutathione peroxidase 3 [Source:ZFIN;Acc:ZDB-GENE-070222-3]
82. pxk ENSDARG00000063195 851 0.793 - 0.793 - - - - - - - PX domain containing serine/threonine kinase [Source:ZFIN;Acc:ZDB-GENE-050208-393]
83. gli2a ENSDARG00000025641 2154 0.793 - - - - - - 0.793 - - GLI family zinc finger 2a [Source:ZFIN;Acc:ZDB-GENE-990706-8]
84. sik2b ENSDARG00000062315 1303 0.793 - - - - - - 0.793 - - salt-inducible kinase 2b [Source:ZFIN;Acc:ZDB-GENE-071012-1]
85. fscn1a ENSDARG00000059680 3999 0.792 - - - - - - 0.792 - - fascin actin-bundling protein 1a [Source:ZFIN;Acc:ZDB-GENE-031009-1]
86. arhgap24 ENSDARG00000100973 1105 0.791 - - - - - - 0.791 - - Rho GTPase activating protein 24 [Source:ZFIN;Acc:ZDB-GENE-091118-20]
87. BX000701.2 ENSDARG00000105074 1123 0.791 0.791 - - - - - - - - gastrula zinc finger protein XlCGF7.1-like [Source:NCBI gene;Acc:101884528]
88. agtpbp1 ENSDARG00000105214 1038 0.79 - - - - - - - 0.790 - ATP/GTP binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-081104-267]
89. swap70b ENSDARG00000057286, ENSDARG00000109359, ENSDARG00000110820 292 0.79 - 0.790 - - - - - - - switching B cell complex subunit SWAP70b [Source:ZFIN;Acc:ZDB-GENE-030131-3587]
90. med19a ENSDARG00000037392, ENSDARG00000114246 2231 0.789 - 0.789 - - - - - - - mediator complex subunit 19a [Source:ZFIN;Acc:ZDB-GENE-060929-232]
91. ctnna1 ENSDARG00000102441 7984 0.789 - 0.789 - - - - - - - catenin (cadherin-associated protein), alpha 1 [Source:ZFIN;Acc:ZDB-GENE-991207-24]
92. cry3 cry3 483 0.788 - 0.788 - - - - - - -
93. gorab ENSDARG00000042031 483 0.788 - - - - - - - 0.788 - golgin, rab6-interacting [Source:ZFIN;Acc:ZDB-GENE-040426-1384]
94. ralba ENSDARG00000040778 1574 0.788 - 0.788 - - - - - - - v-ral simian leukemia viral oncogene homolog Ba (ras related) [Source:ZFIN;Acc:ZDB-GENE-040801-267]
95. gsk3aa ENSDARG00000029501 957 0.787 - - - - - - - 0.787 - glycogen synthase kinase 3 alpha a [Source:ZFIN;Acc:ZDB-GENE-060503-796]
96. kdm5bb ENSDARG00000003098 531 0.786 - - - - - - 0.786 - - lysine (K)-specific demethylase 5Bb [Source:ZFIN;Acc:ZDB-GENE-030424-1]
97. cwc22 ENSDARG00000014008 2385 0.786 - - - - - - 0.786 - - CWC22 spliceosome-associated protein homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060929-452]
98. hoxd10a ENSDARG00000057859 1498 0.785 - 0.785 - - - - - - - homeobox D10a [Source:ZFIN;Acc:ZDB-GENE-990415-116]
99. vta1 ENSDARG00000013732 6072 0.785 - 0.785 - - - - - - - vesicle (multivesicular body) trafficking 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2154]
100. smarcd2 ENSDARG00000088877 416 0.784 - - - 0.784 - - - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 [Source:ZFIN;Acc:ZDB-GENE-080215-1]

There are 611 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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