Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for upb1

Gene Name Gene ID Reads Annotation
upb1 ENSDARG00000011521, ENSDARG00000116790 920 ureidopropionase, beta [Source:ZFIN;Acc:ZDB-GENE-030131-1380]










Genes with expression patterns similar to upb1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. upb1 ENSDARG00000011521, ENSDARG00000116790 920 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ureidopropionase, beta [Source:ZFIN;Acc:ZDB-GENE-030131-1380]
2. otx2 766 1.821 - - - - 0.994 - 0.827 - - orthodenticle homeobox 2, transcript variant X2
3. ARHGEF5 2727 1.797 - - - - 0.994 - 0.803 - - Rho guanine nucleotide exchange factor (GEF) 5, transcript variant X2
4. rcan1a ENSDARG00000003109, ENSDARG00000112478 3319 1.758 - - - - 0.977 - 0.781 - - regulator of calcineurin 1a [Source:ZFIN;Acc:ZDB-GENE-040801-135]
5. arhgap11a ENSDARG00000100019 1642 1.745 - - - - 0.991 - 0.754 - - Rho GTPase activating protein 11A [Source:ZFIN;Acc:ZDB-GENE-040426-2562]
6. lamtor5 ENSDARG00000090194, ENSDARG00000115255 2539 1.739 - - - - 0.990 - 0.749 - - late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 [Source:ZFIN;Acc:ZDB-GENE-110411-193]
7. prrc1 ENSDARG00000044304 1567 1.731 - - - - 0.992 - 0.739 - - proline-rich coiled-coil 1 [Source:ZFIN;Acc:ZDB-GENE-041024-9]
8. hey1 ENSDARG00000070538 986 1.709 - 0.795 - - - - 0.914 - - hes-related family bHLH transcription factor with YRPW motif 1 [Source:ZFIN;Acc:ZDB-GENE-000607-70]
9. scamp2l ENSDARG00000017010 491 1.702 - - 0.767 - - - 0.935 - - secretory carrier membrane protein 2, like [Source:ZFIN;Acc:ZDB-GENE-030131-6432]
10. clasp1a ENSDARG00000010280 1158 1.698 - 0.704 - - 0.994 - - - - cytoplasmic linker associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-081104-520]
11. SUOX ENSDARG00000091574 122 1.679 - 0.876 - - - - 0.803 - - sulfite oxidase [Source:ZFIN;Acc:ZDB-GENE-070718-3]
12. rab25a ENSDARG00000058800 451 1.67 - - 0.865 - - - 0.805 - - RAB25, member RAS oncogene family a [Source:ZFIN;Acc:ZDB-GENE-041212-69]
13. tnrc6b ENSDARG00000074161 4597 1.669 - - - - 0.885 - 0.784 - - trinucleotide repeat containing 6b [Source:ZFIN;Acc:ZDB-GENE-030131-13]
14. BX548021.2_1 BX548021.2_1 164 1.668 - 0.855 0.813 - - - - - -
15. kcnh6 kcnh6 59 1.662 - 0.849 - - - - 0.813 - -
16. anxa3a ENSDARG00000009196, ENSDARG00000112919 2143 1.65 - - 0.780 - - - 0.870 - - annexin A3a [Source:ZFIN;Acc:ZDB-GENE-040912-58]
17. sema3ga ENSDARG00000042545 1603 1.626 - 0.780 - - - - 0.846 - - sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ga [Source:ZFIN;Acc:ZDB-GENE-050513-3]
18. lpar6b ENSDARG00000069441 65 1.618 - - 0.808 - - - 0.810 - - lysophosphatidic acid receptor 6b [Source:ZFIN;Acc:ZDB-GENE-110408-67]
19. DSP DSP 199 1.599 - 0.854 0.745 - - - - - -
20. swap70a ENSDARG00000051819 115 1.594 - 0.799 - - - - 0.795 - - switching B cell complex subunit SWAP70a [Source:ZFIN;Acc:ZDB-GENE-040426-1182]
21. tmem8a ENSDARG00000032795 677 1.584 - - 0.746 - - - 0.838 - - transmembrane protein 8A [Source:ZFIN;Acc:ZDB-GENE-090312-158]
22. vps11 ENSDARG00000036338 421 1.578 - 0.760 - - - - 0.818 - - vacuolar protein sorting 11 [Source:ZFIN;Acc:ZDB-GENE-050731-5]
23. ch25hl1.1 ENSDARG00000039381, ENSDARG00000109469, ENSDARG00000113169 838 1.577 - - - - - 0.746 0.831 - - cholesterol 25-hydroxylase like 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8617]
24. srpx2 ENSDARG00000034559 452 1.575 0.704 - - - - - 0.871 - - sushi-repeat containing protein X-linked 2 [Source:ZFIN;Acc:ZDB-GENE-110411-231]
25. CABZ01059627.1 ENSDARG00000078394 101 1.573 - - 0.801 - - - 0.772 - -
26. FUZ ENSDARG00000079730 821 1.573 - 0.794 - - - - 0.779 - - fuzzy planar cell polarity protein [Source:ZFIN;Acc:ZDB-GENE-090609-2]
27. lonp2 ENSDARG00000101438 179 1.569 - 0.824 - - - - 0.745 - - lon peptidase 2, peroxisomal [Source:ZFIN;Acc:ZDB-GENE-041212-1]
28. lnx1 ENSDARG00000043323, ENSDARG00000113875 1199 1.568 - 0.843 0.725 - - - - - - ligand of numb-protein X 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9439]
29. zgc:91985 zgc:91985 1517 1.556 - 0.765 - - - - 0.791 - -
30. si:dkey-182g1.2 ENSDARG00000052680, ENSDARG00000109368 147 1.55 - 0.849 - - - - 0.701 - - si:dkey-182g1.2 [Source:ZFIN;Acc:ZDB-GENE-060503-619]
31. dnmbp ENSDARG00000074121 2711 1.547 - 0.703 - - - - 0.844 - - dynamin binding protein [Source:ZFIN;Acc:ZDB-GENE-101026-2]
32. rhbdl2 ENSDARG00000069833, ENSDARG00000109477 891 1.54 - - 0.735 - - - 0.805 - - rhomboid, veinlet-like 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-732]
33. SLC6A7 ENSDARG00000030006 304 1.538 - - 0.766 - - - 0.772 - - solute carrier family 6 member 7 [Source:ZFIN;Acc:ZDB-GENE-070112-1492]
34. si:ch211-135f11.1 166 1.535 - - 0.713 - - - 0.822 - - si:ch211-135f11.1, transcript variant X3
35. zc3h7b 2936 1.534 - 0.820 - - - - 0.714 - - zinc finger CCCH-type containing 7B
36. fut9 fut9 519 1.533 - 0.811 0.722 - - - - - -
37. nt5c1bb ENSDARG00000033742 1248 1.529 - 0.752 - - - - 0.777 - - 5'-nucleotidase, cytosolic IB b [Source:ZFIN;Acc:ZDB-GENE-030131-7205]
38. si:ch211-157c3.4 ENSDARG00000087093 22736 1.525 - - 0.818 - - - 0.707 - - si:ch211-157c3.4 [Source:ZFIN;Acc:ZDB-GENE-030131-8454]
39. inadl 80 1.522 - 0.744 - - - - 0.778 - - InaD-like (Drosophila), transcript variant X4
40. si:ch73-52f15.5 ENSDARG00000095400 1368 1.517 - - 0.737 - - - 0.780 - - si:ch73-52f15.5 [Source:ZFIN;Acc:ZDB-GENE-091204-341]
41. zgc:153284 ENSDARG00000036876, ENSDARG00000109673 3507 1.514 - - 0.733 - - - 0.781 - - zgc:153284 [Source:ZFIN;Acc:ZDB-GENE-060825-317]
42. ebp ENSDARG00000046098 502 1.51 - 0.768 0.742 - - - - - - EBP, cholestenol delta-isomerase [Source:ZFIN;Acc:ZDB-GENE-040718-12]
43. aldh3b1 ENSDARG00000013839 796 1.508 - - 0.785 - - - 0.723 - - aldehyde dehydrogenase 3 family, member B1 [Source:ZFIN;Acc:ZDB-GENE-021120-3]
44. NID2 NID2 5282 1.497 - - - - 0.743 - 0.754 - -
45. CABZ01049802.1 CABZ01049802.1 195 1.496 - - 0.757 - - - 0.739 - -
46. tmem168a ENSDARG00000068705 498 1.49 - - 0.741 - - - 0.749 - - transmembrane protein 168a [Source:ZFIN;Acc:ZDB-GENE-050419-97]
47. kcnk1a ENSDARG00000045067 743 1.486 - 0.779 - - - - 0.707 - - potassium channel, subfamily K, member 1a [Source:ZFIN;Acc:ZDB-GENE-070620-26]
48. stard10 ENSDARG00000097718 1041 1.478 - - 0.728 - - - 0.750 - - StAR-related lipid transfer (START) domain containing 10 [Source:ZFIN;Acc:ZDB-GENE-040426-1797]
49. tctex1d1 ENSDARG00000103545 409 1.427 - - - - - - 0.723 - 0.704 Tctex1 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040912-49]
50. THEM6_1 ENSDARG00000103914 469 1.419 - - 0.714 - - - 0.705 - - thioesterase superfamily member 6 [Source:HGNC Symbol;Acc:HGNC:29656]
51. zgc:110699 ENSDARG00000017474 381 0.997 - - - - 0.997 - - - - zgc:110699 [Source:ZFIN;Acc:ZDB-GENE-050522-487]
52. il12rb2l ENSDARG00000074850 407 0.997 - - - - 0.997 - - - - interleukin 12 receptor, beta 2a, like [Source:ZFIN;Acc:ZDB-GENE-080107-6]
53. cdkn1a ENSDARG00000076554 591 0.996 - - - - 0.996 - - - - cyclin-dependent kinase inhibitor 1A [Source:ZFIN;Acc:ZDB-GENE-070705-7]
54. ccdc53 982 0.996 - - - - 0.996 - - - - coiled-coil domain containing 53
55. tarsl2 ENSDARG00000092774 505 0.996 - - - - 0.996 - - - - threonyl-tRNA synthetase-like 2 [Source:ZFIN;Acc:ZDB-GENE-081104-490]
56. USP2_1 USP2_1 544 0.996 - - - - 0.996 - - - -
57. CABZ01027552.1 CABZ01027552.1 760 0.996 - - - - 0.996 - - - -
58. armc9 ENSDARG00000087299 459 0.996 - - - - 0.996 - - - - armadillo repeat containing 9 [Source:ZFIN;Acc:ZDB-GENE-100922-67]
59. ttc13 ENSDARG00000063242 1360 0.995 - - - - 0.995 - - - - tetratricopeptide repeat domain 13 [Source:ZFIN;Acc:ZDB-GENE-080722-25]
60. ticrr ENSDARG00000045605 739 0.995 - - - - 0.995 - - - - TopBP1-interacting, checkpoint, and replication regulator [Source:ZFIN;Acc:ZDB-GENE-040728-1]
61. cdk5 ENSDARG00000056683 1998 0.995 - - - - 0.995 - - - - cyclin-dependent kinase 5 [Source:ZFIN;Acc:ZDB-GENE-010131-2]
62. cog4 ENSDARG00000054264 785 0.995 - - - - 0.995 - - - - component of oligomeric golgi complex 4 [Source:ZFIN;Acc:ZDB-GENE-060312-33]
63. sh3bp5a ENSDARG00000100529 642 0.995 - - - - 0.995 - - - - SH3-domain binding protein 5a (BTK-associated) [Source:ZFIN;Acc:ZDB-GENE-111111-2]
64. nkx2.3 ENSDARG00000039095, ENSDARG00000113490 493 0.995 - - - - 0.995 - - - - NK2 homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-990415-178]
65. SNORA70 SNORA70 511 0.995 - - - - 0.995 - - - -
66. WIPF3 WIPF3 804 0.995 - - - - 0.995 - - - -
67. atp1b4 ENSDARG00000053262 1337 0.995 - - - - 0.995 - - - - ATPase Na+/K+ transporting subunit beta 4 [Source:ZFIN;Acc:ZDB-GENE-070412-1]
68. pik3r3a ENSDARG00000103038 1132 0.994 - - - - 0.994 - - - - phosphoinositide-3-kinase, regulatory subunit 3a (gamma) [Source:ZFIN;Acc:ZDB-GENE-040426-1978]
69. sptlc1 ENSDARG00000042995, ENSDARG00000112519 1291 0.994 - - - - 0.994 - - - - serine palmitoyltransferase, long chain base subunit 1 [Source:ZFIN;Acc:ZDB-GENE-050522-61]
70. rnaseh1 ENSDARG00000042571 922 0.994 - - - - 0.994 - - - - ribonuclease H1 [Source:ZFIN;Acc:ZDB-GENE-040718-407]
71. si:ch73-86n18.1 ENSDARG00000056379, ENSDARG00000112771 2391 0.993 - - - - 0.993 - - - - si:ch73-86n18.1 [Source:ZFIN;Acc:ZDB-GENE-141216-19]
72. usp40 ENSDARG00000071197 825 0.993 - - - - 0.993 - - - - ubiquitin specific peptidase 40 [Source:ZFIN;Acc:ZDB-GENE-060518-5]
73. adcyap1b ENSDARG00000027740 1539 0.993 - - - - 0.993 - - - - adenylate cyclase activating polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-041010-89]
74. slc20a1b ENSDARG00000010641 2564 0.993 - - - - 0.993 - - - - solute carrier family 20 (phosphate transporter), member 1b [Source:ZFIN;Acc:ZDB-GENE-030131-260]
75. nmt1a ENSDARG00000052966 5918 0.993 - - - - 0.993 - - - - N-myristoyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-050522-477]
76. clgn ENSDARG00000009315 993 0.993 - - - - 0.993 - - - - calmegin [Source:ZFIN;Acc:ZDB-GENE-060929-708]
77. si:dkey-251i10.2 ENSDARG00000093957 4424 0.993 - - - - 0.993 - - - - si:dkey-251i10.2 [Source:ZFIN;Acc:ZDB-GENE-050506-102]
78. znf280d ENSDARG00000077013 1387 0.993 - - - - 0.993 - - - - zinc finger protein 280D [Source:ZFIN;Acc:ZDB-GENE-030131-2260]
79. col11a1b ENSDARG00000009014 9998 0.993 - - - - 0.993 - - - - collagen, type XI, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-070912-607]
80. gab1 ENSDARG00000037018 1489 0.993 - - - - 0.993 - - - - GRB2-associated binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2674]
81. ipo4 ENSDARG00000041493 1578 0.993 - - - - 0.993 - - - - importin 4 [Source:ZFIN;Acc:ZDB-GENE-041014-307]
82. rbpja ENSDARG00000003398 1309 0.993 - - - - 0.993 - - - - recombination signal binding protein for immunoglobulin kappa J region a [Source:ZFIN;Acc:ZDB-GENE-031117-1]
83. exosc10 ENSDARG00000037708, ENSDARG00000115953 1121 0.992 - - - - 0.992 - - - - exosome component 10 [Source:ZFIN;Acc:ZDB-GENE-040426-781]
84. esf1 ENSDARG00000008740 1206 0.992 - - - - 0.992 - - - - ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-4917]
85. wu:fc26g07 wu:fc26g07 1165 0.992 - - - - 0.992 - - - -
86. ESCO1 ENSDARG00000077057 1112 0.992 - - - - 0.992 - - - - establishment of sister chromatid cohesion N-acetyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-130530-818]
87. SLC7A5 ENSDARG00000099265, ENSDARG00000115845 2319 0.992 - - - - 0.992 - - - - solute carrier family 7 (amino acid transporter light chain, L system), member 5 [Source:ZFIN;Acc:ZDB-GENE-080818-4]
88. prickle3 ENSDARG00000073996 840 0.992 - - - - 0.992 - - - - prickle homolog 3 [Source:ZFIN;Acc:ZDB-GENE-081105-86]
89. thoc7 ENSDARG00000015394 3824 0.992 - - - - 0.992 - - - - THO complex 7 [Source:ZFIN;Acc:ZDB-GENE-040801-17]
90. itm2ca ENSDARG00000043448 1265 0.992 - - - - 0.992 - - - - integral membrane protein 2Ca [Source:ZFIN;Acc:ZDB-GENE-040718-284]
91. kdm6bb ENSDARG00000056929 4807 0.992 - - - - 0.992 - - - - lysine (K)-specific demethylase 6B, b [Source:ZFIN;Acc:ZDB-GENE-040724-166]
92. USP24 ENSDARG00000059925 1294 0.992 - - - - 0.992 - - - - ubiquitin specific peptidase 24 [Source:ZFIN;Acc:ZDB-GENE-030131-4356]
93. sap130b ENSDARG00000079352 1468 0.992 - - - - 0.992 - - - - Sin3A-associated protein b [Source:ZFIN;Acc:ZDB-GENE-070912-570]
94. nsl1 ENSDARG00000024471 1269 0.991 - - - - 0.991 - - - - NSL1, MIS12 kinetochore complex component [Source:ZFIN;Acc:ZDB-GENE-041014-362]
95. eif3d ENSDARG00000021257 1524 0.991 - - - - 0.991 - - - - eukaryotic translation initiation factor 3, subunit D [Source:ZFIN;Acc:ZDB-GENE-030131-8442]
96. pik3cb ENSDARG00000075253 2075 0.991 - - - - 0.991 - - - - phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta [Source:ZFIN;Acc:ZDB-GENE-030131-1904]
97. pitrm1 ENSDARG00000038563, ENSDARG00000115745 1321 0.991 - - - - 0.991 - - - - pitrilysin metallopeptidase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2876]
98. AP3B1 2363 0.991 - - - - 0.991 - - - - adaptor related protein complex 3 beta 1 subunit
99. mtor ENSDARG00000053196 2156 0.991 - - - - 0.991 - - - - mechanistic target of rapamycin kinase [Source:ZFIN;Acc:ZDB-GENE-030131-2974]
100. stx6 ENSDARG00000042742, ENSDARG00000115635 1208 0.991 - - - - 0.991 - - - - syntaxin 6 [Source:ZFIN;Acc:ZDB-GENE-030131-858]

There are 1337 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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