Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for ubr3

Gene Name Gene ID Reads Annotation
ubr3 ENSDARG00000042508 738 ubiquitin protein ligase E3 component n-recognin 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1473]










Genes with expression patterns similar to ubr3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ubr3 ENSDARG00000042508 738 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ubiquitin protein ligase E3 component n-recognin 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1473]
2. pitpnb ENSDARG00000036005 513 1.63 - 0.784 - - - 0.846 - - - phosphatidylinositol transfer protein, beta [Source:ZFIN;Acc:ZDB-GENE-040426-895]
3. si:dkeyp-59c12.1 ENSDARG00000038112 186 1.587 - 0.836 - - - 0.751 - - - si:dkeyp-59c12.1 [Source:ZFIN;Acc:ZDB-GENE-050419-167]
4. lrrfip1a ENSDARG00000030012 1263 1.558 - 0.793 - - - - 0.765 - - leucine rich repeat (in FLII) interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-99]
5. gabpb2b ENSDARG00000054344, ENSDARG00000109958 238 1.528 - 0.794 - - - - - 0.734 - GA binding protein transcription factor subunit beta 2b [Source:ZFIN;Acc:ZDB-GENE-050208-136]
6. CABZ01006835.1 CABZ01006835.1 92 1.51 - 0.797 - - - 0.713 - - -
7. CCDC167 ENSDARG00000045850 1024 1.506 - 0.738 - - - - 0.768 - - coiled-coil domain containing 167 [Source:ZFIN;Acc:ZDB-GENE-041210-79]
8. adsl ENSDARG00000017049, ENSDARG00000111547, ENSDARG00000116659 1430 1.503 - - - - - 0.790 - 0.713 - adenylosuccinate lyase [Source:ZFIN;Acc:ZDB-GENE-030131-6363]
9. C20H12orf57 C20H12orf57 3325 1.498 - - - - - 0.766 0.732 - -
10. timm50 ENSDARG00000031098, ENSDARG00000109900 988 1.459 - - - - - 0.731 0.728 - - translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040426-1618]
11. CASK CASK 1750 1.457 - - - - 0.748 - 0.709 - -
12. abt1 ENSDARG00000043666 345 1.449 0.707 - - - - 0.742 - - - activator of basal transcription 1 [Source:ZFIN;Acc:ZDB-GENE-050522-127]
13. slc8a3 ENSDARG00000004931 338 1.442 - 0.724 - - - - - 0.718 - solute carrier family 8 (sodium/calcium exchanger), member 3 [Source:ZFIN;Acc:ZDB-GENE-050810-1]
14. AL954696.1 ENSDARG00000078442 768 1.438 - 0.732 - - - - - 0.706 - NOP9 nucleolar protein [Source:NCBI gene;Acc:100332577]
15. gtdc1 ENSDARG00000020642 299 1.438 - 0.715 - - - - - 0.723 - glycosyltransferase-like domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050417-8]
16. RNF115 ENSDARG00000062450 83 1.429 0.707 - - - - - - 0.722 - ring finger protein 115 [Source:ZFIN;Acc:ZDB-GENE-061215-82]
17. eif3d ENSDARG00000021257 1524 1.41 - - - - - - 0.703 0.707 - eukaryotic translation initiation factor 3, subunit D [Source:ZFIN;Acc:ZDB-GENE-030131-8442]
18. fam46c 1913 0.923 - - - - - - 0.923 - - family with sequence similarity 46, member C
19. C9H21orf33 C9H21orf33 321 0.896 - - - - - 0.896 - - -
20. kifap3a ENSDARG00000008639 721 0.89 - 0.890 - - - - - - - kinesin-associated protein 3a [Source:ZFIN;Acc:ZDB-GENE-040912-74]
21. NUAK1_1 NUAK1_1 1782 0.886 - - - - - 0.886 - - -
22. gsap ENSDARG00000045481 145 0.883 - 0.883 - - - - - - - gamma-secretase activating protein [Source:ZFIN;Acc:ZDB-GENE-041210-216]
23. hltf ENSDARG00000026053 115 0.883 - 0.883 - - - - - - - helicase-like transcription factor [Source:ZFIN;Acc:ZDB-GENE-030131-3306]
24. B3GNT1 B3GNT1 601 0.879 - 0.879 - - - - - - -
25. PEG3_38 PEG3_38 521 0.878 - 0.878 - - - - - - -
26. pax3a ENSDARG00000010192 626 0.87 - 0.870 - - - - - - - paired box 3a [Source:ZFIN;Acc:ZDB-GENE-980526-52]
27. rnf165a ENSDARG00000077906 133 0.867 - 0.867 - - - - - - - ring finger protein 165a [Source:ZFIN;Acc:ZDB-GENE-091118-64]
28. emc4_1 ENSDARG00000039268 443 0.866 - - - - - 0.866 - - - ER membrane protein complex subunit 4 [Source:ZFIN;Acc:ZDB-GENE-040426-1891]
29. ano5a ENSDARG00000015731 601 0.866 - 0.866 - - - - - - - anoctamin 5a [Source:ZFIN;Acc:ZDB-GENE-091013-2]
30. akap17a ENSDARG00000104768 275 0.865 - 0.865 - - - - - - - A kinase (PRKA) anchor protein 17A [Source:ZFIN;Acc:ZDB-GENE-040426-1460]
31. pim1 ENSDARG00000100020 7035 0.864 - - - - - - 0.864 - - Pim-1 proto-oncogene, serine/threonine kinase [Source:ZFIN;Acc:ZDB-GENE-061013-139]
32. cacng6b ENSDARG00000046079 258 0.863 - 0.863 - - - - - - - calcium channel, voltage-dependent, gamma subunit 6b [Source:ZFIN;Acc:ZDB-GENE-100922-272]
33. grid2ipb ENSDARG00000095603, ENSDARG00000111282 90 0.859 - 0.859 - - - - - - - glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein, b [Source:ZFIN;Acc:ZDB-GENE-040724-161]
34. hnrnpc ENSDARG00000053810, ENSDARG00000113662 66 0.859 - 0.859 - - - - - - - heterogeneous nuclear ribonucleoprotein C [Source:ZFIN;Acc:ZDB-GENE-040426-2043]
35. wu:fc75a09 ENSDARG00000111625 289 0.859 - 0.859 - - - - - - - wu:fc75a09 [Source:ZFIN;Acc:ZDB-GENE-030131-4139]
36. hprt1l ENSDARG00000014866 696 0.856 - 0.856 - - - - - - - hypoxanthine phosphoribosyltransferase 1, like [Source:ZFIN;Acc:ZDB-GENE-040625-17]
37. hmga1b ENSDARG00000070951 377 0.855 - 0.855 - - - - - - - high mobility group AT-hook 1b [Source:ZFIN;Acc:ZDB-GENE-061013-204]
38. trappc3 ENSDARG00000045364 1021 0.854 - - - - - 0.854 - - - trafficking protein particle complex 3 [Source:ZFIN;Acc:ZDB-GENE-040801-120]
39. ALMS1 ENSDARG00000074779 900 0.851 - 0.851 - - - - - - - Alstrom syndrome protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4837]
40. zgc:172121 ENSDARG00000034430, ENSDARG00000116650 81 0.85 - 0.850 - - - - - - - zgc:172121 [Source:ZFIN;Acc:ZDB-GENE-030131-9545]
41. rnf8 ENSDARG00000044949 751 0.849 - - - - - 0.849 - - - ring finger protein 8, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-040426-849]
42. dnaja2l ENSDARG00000010745 2367 0.848 - - - - - - 0.848 - - DnaJ (Hsp40) homolog, subfamily A, member 2, like [Source:ZFIN;Acc:ZDB-GENE-030131-2884]
43. lin7a ENSDARG00000013414 1589 0.847 - 0.847 - - - - - - - lin-7 homolog A (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-040426-1665]
44. aktip ENSDARG00000026862, ENSDARG00000115058 2775 0.844 - - - - - 0.844 - - - akt interacting protein [Source:ZFIN;Acc:ZDB-GENE-030909-5]
45. dnmt3aa ENSDARG00000005394 63 0.843 - 0.843 - - - - - - - DNA (cytosine-5-)-methyltransferase 3 alpha a [Source:ZFIN;Acc:ZDB-GENE-050314-5]
46. zeb1b ENSDARG00000013207, ENSDARG00000113922 2571 0.843 - - - - - - 0.843 - - zinc finger E-box binding homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-010621-1]
47. proza ENSDARG00000037783, ENSDARG00000116864 500 0.843 - 0.843 - - - - - - - protein Z, vitamin K-dependent plasma glycoprotein a [Source:ZFIN;Acc:ZDB-GENE-061013-403]
48. scn4bb ENSDARG00000060319, ENSDARG00000112427 63 0.843 - 0.843 - - - - - - - sodium channel, voltage-gated, type IV, beta b [Source:ZFIN;Acc:ZDB-GENE-031116-71]
49. BX640547.1_1 ENSDARG00000092775 76 0.84 - 0.840 - - - - - - - uncharacterized LOC110439536 [Source:NCBI gene;Acc:110439536]
50. btc ENSDARG00000098112, ENSDARG00000110368 333 0.84 - 0.840 - - - - - - - betacellulin, epidermal growth factor family member [Source:ZFIN;Acc:ZDB-GENE-050311-1]
51. xirp2b ENSDARG00000091090 759 0.839 - 0.839 - - - - - - - xin actin binding repeat containing 2b [Source:ZFIN;Acc:ZDB-GENE-030521-26]
52. gapvd1 ENSDARG00000090183, ENSDARG00000113177 611 0.838 - 0.838 - - - - - - - GTPase activating protein and VPS9 domains 1 [Source:ZFIN;Acc:ZDB-GENE-040718-117]
53. RASIP1 ENSDARG00000074829 113 0.838 - 0.838 - - - - - - - Ras interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-120403-3]
54. pitx3 ENSDARG00000070069 363 0.835 - 0.835 - - - - - - - paired-like homeodomain 3 [Source:ZFIN;Acc:ZDB-GENE-041229-4]
55. slc22a2 ENSDARG00000030530 313 0.835 - 0.835 - - - - - - - solute carrier family 22 (organic cation transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2167]
56. cth ENSDARG00000074301 3860 0.835 - - - - - 0.835 - - - cystathionase (cystathionine gamma-lyase) [Source:ZFIN;Acc:ZDB-GENE-030131-774]
57. si:ch211-242b18.1 ENSDARG00000054723 2929 0.834 - - - - - - 0.834 - - si:ch211-242b18.1 [Source:ZFIN;Acc:ZDB-GENE-030131-1518]
58. TTC18 TTC18 58 0.834 - 0.834 - - - - - - -
59. mre11a ENSDARG00000105014 278 0.832 - 0.832 - - - - - - - MRE11 homolog A, double strand break repair nuclease [Source:ZFIN;Acc:ZDB-GENE-040426-2638]
60. rexo1 ENSDARG00000026986 770 0.829 - 0.829 - - - - - - - REX1, RNA exonuclease 1 homolog [Source:ZFIN;Acc:ZDB-GENE-030131-1650]
61. TBC1D10B ENSDARG00000078604, ENSDARG00000114712 453 0.829 - 0.829 - - - - - - - TBC1 domain family, member 10b [Source:ZFIN;Acc:ZDB-GENE-030131-7754]
62. CU468924.1 CU468924.1 544 0.828 - 0.828 - - - - - - -
63. polr1b ENSDARG00000077469, ENSDARG00000115880 313 0.827 - 0.827 - - - - - - - RNA polymerase I subunit B [Source:ZFIN;Acc:ZDB-GENE-040426-1598]
64. CABZ01069519.1 CABZ01069519.1 64 0.827 - 0.827 - - - - - - -
65. KCNA1 KCNA1 268 0.826 - 0.826 - - - - - - -
66. zgc:174563 zgc:174563 198 0.825 - 0.825 - - - - - - -
67. timeless ENSDARG00000078497 1114 0.825 - - - - - 0.825 - - - timeless circadian clock [Source:ZFIN;Acc:ZDB-GENE-030131-8978]
68. gins2 ENSDARG00000002304 1187 0.823 0.823 - - - - - - - - GINS complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-050419-19]
69. fgf12b ENSDARG00000113525 261 0.822 - 0.822 - - - - - - - fibroblast growth factor 12b [Source:ZFIN;Acc:ZDB-GENE-060825-134]
70. tmlhe ENSDARG00000077547 301 0.822 - 0.822 - - - - - - - trimethyllysine hydroxylase, epsilon [Source:ZFIN;Acc:ZDB-GENE-091204-144]
71. ck2a2a ck2a2a 1695 0.822 - - - - - 0.822 - - -
72. elp2 ENSDARG00000017199 399 0.821 - - - - - 0.821 - - - elongator acetyltransferase complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-060503-525]
73. commd4 ENSDARG00000061946 3281 0.82 - - - - - 0.820 - - - COMM domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-060929-600]
74. exoc7 ENSDARG00000087229 987 0.82 - - - - - 0.820 - - - exocyst complex component 7 [Source:ZFIN;Acc:ZDB-GENE-040426-2752]
75. si:ch211-255g12.7 si:ch211-255g12.7 44 0.82 - 0.820 - - - - - - -
76. tmtc2 tmtc2 798 0.819 - - - - - - - 0.819 -
77. pdss2 ENSDARG00000012563 984 0.819 - 0.819 - - - - - - - prenyl (decaprenyl) diphosphate synthase, subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040718-43]
78. six2b ENSDARG00000054878 567 0.818 - 0.818 - - - - - - - SIX homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-080723-23]
79. nxn ENSDARG00000033978, ENSDARG00000115888 1683 0.817 - - - - - - 0.817 - - nucleoredoxin [Source:ZFIN;Acc:ZDB-GENE-050522-75]
80. MSS51 ENSDARG00000075463 428 0.816 - 0.816 - - - - - - - MSS51 mitochondrial translational activator [Source:ZFIN;Acc:ZDB-GENE-130530-775]
81. gemin8 ENSDARG00000053496, ENSDARG00000115240 1214 0.814 - 0.814 - - - - - - - gem (nuclear organelle) associated protein 8 [Source:ZFIN;Acc:ZDB-GENE-041114-189]
82. rcbtb2 ENSDARG00000090687 1658 0.813 - 0.813 - - - - - - - regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 [Source:ZFIN;Acc:ZDB-GENE-071016-3]
83. dopey1 438 0.813 - 0.813 - - - - - - - dopey family member 1, transcript variant X4
84. porcnl ENSDARG00000052455 29 0.813 - 0.813 - - - - - - - porcupine O-acyltransferase like [Source:ZFIN;Acc:ZDB-GENE-030131-5931]
85. prr14 ENSDARG00000089232 495 0.813 - 0.813 - - - - - - - proline rich 14 [Source:ZFIN;Acc:ZDB-GENE-030131-3785]
86. hivep2 hivep2 422 0.813 - - - - - 0.813 - - -
87. wdr62 ENSDARG00000060312 554 0.812 - 0.812 - - - - - - - WD repeat domain 62 [Source:ZFIN;Acc:ZDB-GENE-060503-291]
88. nfat5 nfat5 94 0.812 - 0.812 - - - - - - -
89. ndufa5 ENSDARG00000039346 2617 0.811 - - - - - - 0.811 - - NADH:ubiquinone oxidoreductase subunit A5 [Source:ZFIN;Acc:ZDB-GENE-050320-17]
90. CR450842.1 CR450842.1 129 0.811 - - - - - 0.811 - - -
91. USP6 USP6 613 0.809 - 0.809 - - - - - - -
92. tbl1xr1b ENSDARG00000008966 2203 0.809 - - - - - - 0.809 - - transducin (beta)-like 1 X-linked receptor 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1192]
93. kctd16b ENSDARG00000020102 83 0.808 - 0.808 - - - - - - - potassium channel tetramerization domain containing 16b [Source:ZFIN;Acc:ZDB-GENE-060117-2]
94. si:dkey-50i6.5 ENSDARG00000101320 95 0.807 - - - - - 0.807 - - - si:dkey-50i6.5 [Source:ZFIN;Acc:ZDB-GENE-081031-53]
95. znf292b ENSDARG00000043973 3791 0.807 - - - - - - 0.807 - - zinc finger protein 292b [Source:ZFIN;Acc:ZDB-GENE-030131-9559]
96. cdkn2d ENSDARG00000094176 190 0.807 - 0.807 - - - - - - - cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) [Source:ZFIN;Acc:ZDB-GENE-110316-1]
97. azi1 azi1 507 0.807 - 0.807 - - - - - - -
98. arxa ENSDARG00000058011 440 0.807 - 0.807 - - - - - - - aristaless related homeobox a [Source:ZFIN;Acc:ZDB-GENE-990415-15]
99. pds5a ENSDARG00000055022, ENSDARG00000115793 3842 0.807 - - - - - - 0.807 - - PDS5 cohesin associated factor A [Source:ZFIN;Acc:ZDB-GENE-040426-1612]
100. bag3 ENSDARG00000039486 1087 0.805 - 0.805 - - - - - - - BCL2 associated athanogene 3 [Source:ZFIN;Acc:ZDB-GENE-040801-40]

There are 761 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA