Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for ubr1

Gene Name Gene ID Reads Annotation
ubr1 ENSDARG00000060480 71 ubiquitin protein ligase E3 component n-recognin 1 [Source:ZFIN;Acc:ZDB-GENE-091110-2]










Genes with expression patterns similar to ubr1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ubr1 ENSDARG00000060480 71 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ubiquitin protein ligase E3 component n-recognin 1 [Source:ZFIN;Acc:ZDB-GENE-091110-2]
2. FAM177B 9 1.952 - - - - - 0.952 1.000 - - family with sequence similarity 177 member B
3. fbxo32 ENSDARG00000040277 93 1.952 - - - - - 0.952 1.000 - - F-box protein 32 [Source:ZFIN;Acc:ZDB-GENE-040426-1040]
4. GABRR1 ENSDARG00000043902 71 1.916 - - - - - - 0.924 0.992 - gamma-aminobutyric acid (GABA) A receptor, rho 1 [Source:ZFIN;Acc:ZDB-GENE-040724-212]
5. rabggta ENSDARG00000061024 332 1.823 - 0.915 - - - - 0.908 - - Rab geranylgeranyltransferase subunit alpha [Source:ZFIN;Acc:ZDB-GENE-060929-1042]
6. lcmt1 ENSDARG00000045140, ENSDARG00000111263 413 1.794 - - - - - 0.905 - 0.889 - leucine carboxyl methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040912-75]
7. nitr3a_1 ENSDARG00000110676 44 1.739 0.739 - - - - - 1.000 - - novel immune-type receptor 3a [Source:NCBI gene;Acc:60649]
8. CU469544.1 CU469544.1 219 1.731 - - - - - - 0.758 0.973 -
9. si:dkey-7a20.9 si:dkey-7a20.9 154 1.728 - - - - - 0.876 0.852 - -
10. PRKRIR PRKRIR 261 1.716 - - - - - - 0.845 0.871 -
11. zp2.5 ENSDARG00000086522 15 1.71 - - - - 0.710 - 1.000 - - zona pellucida glycoprotein 2, tandem duplicate 5 [Source:ZFIN;Acc:ZDB-GENE-090306-1]
12. srd5a2a ENSDARG00000043587 21 1.692 - - - - 0.702 - - 0.990 - steroid-5-alpha-reductase, alpha polypeptide 2a [Source:ZFIN;Acc:ZDB-GENE-050417-199]
13. usp8 ENSDARG00000063719 643 1.69 - 0.793 - - - - - 0.897 - ubiquitin specific peptidase 8 [Source:ZFIN;Acc:ZDB-GENE-030131-1949]
14. PPM1J ENSDARG00000074690 109 1.684 0.930 - - - - - 0.754 - - protein phosphatase, Mg2+/Mn2+ dependent, 1J [Source:ZFIN;Acc:ZDB-GENE-091230-9]
15. BX897726.3 BX897726.3 220 1.682 - - - - - 0.727 - 0.955 -
16. spop ENSDARG00000100519 177 1.68 0.721 - - - - - - 0.959 - speckle-type POZ protein [Source:ZFIN;Acc:ZDB-GENE-040426-1378]
17. CU459160.1 CU459160.1 104 1.679 - 0.775 - - - 0.904 - - -
18. psmd2 ENSDARG00000103190 141 1.679 0.729 - - - - - - 0.950 - proteasome 26S subunit, non-ATPase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1480]
19. rab1bb ENSDARG00000056479, ENSDARG00000109723 551 1.676 - 0.783 - - - - - 0.893 - RAB1B, member RAS oncogene family b [Source:ZFIN;Acc:ZDB-GENE-040625-133]
20. cables2b ENSDARG00000017154 131 1.673 - 0.872 - - - - 0.801 - - Cdk5 and Abl enzyme substrate 2b [Source:ZFIN;Acc:ZDB-GENE-090313-249]
21. znf526 ENSDARG00000077143 257 1.646 - - - - - 0.778 0.868 - - zinc finger protein 526 [Source:ZFIN;Acc:ZDB-GENE-100922-260]
22. si:ch211-286m4.1 si:ch211-286m4.1 47 1.642 0.914 - - - 0.728 - - - -
23. EPS8 78 1.628 - 0.828 - - - - 0.800 - - epidermal growth factor receptor pathway substrate 8, transcript variant X14
24. PEG3_2 PEG3_2 468 1.601 - - - - - 0.833 0.768 - -
25. qpctla ENSDARG00000061691 869 1.598 - - - - - 0.800 - 0.798 - glutaminyl-peptide cyclotransferase-like a [Source:ZFIN;Acc:ZDB-GENE-030131-1441]
26. als2b ENSDARG00000076924 738 1.587 - 0.874 - - - - - 0.713 - amyotrophic lateral sclerosis 2b (juvenile) [Source:ZFIN;Acc:ZDB-GENE-080929-1]
27. zgc:194314 zgc:194314 982 1.557 - - - - - 0.770 0.787 - -
28. gpr98 gpr98 717 1.524 0.768 - - - - - - 0.756 -
29. ptprn2 ENSDARG00000035970, ENSDARG00000114075 354 1.518 0.761 - - - - - - 0.757 - protein tyrosine phosphatase, receptor type, N polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-030131-3758]
30. flvcr2b ENSDARG00000031506 170 1.51 - 0.752 - - - - 0.758 - - feline leukemia virus subgroup C cellular receptor family, member 2b [Source:ZFIN;Acc:ZDB-GENE-041210-312]
31. smim15 ENSDARG00000086699, ENSDARG00000114331 1945 1.503 - 0.798 - - - - - 0.705 - small integral membrane protein 15 [Source:ZFIN;Acc:ZDB-GENE-070410-48]
32. THAP6 THAP6 57 1.487 0.768 - - - - - 0.719 - -
33. si:dkey-220a11.10 si:dkey-220a11.10 258 1.486 - 0.741 - - - - 0.745 - -
34. zgc:114037 63 1.469 0.762 0.707 - - - - - - - zgc:114037
35. si:dkey-157l19.2 ENSDARG00000060340 635 1.462 - 0.754 - - - 0.708 - - - si:dkey-157l19.2 [Source:ZFIN;Acc:ZDB-GENE-090313-190]
36. zgc:194398 ENSDARG00000078250 815 1.453 - 0.714 - - - 0.739 - - - zgc:194398 [Source:ZFIN;Acc:ZDB-GENE-081022-111]
37. C9H2orf40 C9H2orf40 212 1.441 0.711 0.730 - - - - - - -
38. BX323836.1 BX323836.1 1 1 - - - - - - 1.000 - -
39. slc5a1 ENSDARG00000013871 4 1 - - - - - - 1.000 - - solute carrier family 5 (sodium/glucose cotransporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1524]
40. SLC2A13 SLC2A13 74 1 1.000 - - - - - - - -
41. zgc:152938 ENSDARG00000102586 97 1 - - - - - - 1.000 - - zgc:152938 [Source:ZFIN;Acc:ZDB-GENE-061013-458]
42. PLEKHG4B PLEKHG4B 1 1 1.000 - - - - - - - -
43. 5S_rRNA_31 5S_rRNA_31 3 1 1.000 - - - - - - - -
44. si:ch211-233h19.2 ENSDARG00000042213 47 1 - - - - - - 1.000 - - si:ch211-233h19.2 [Source:ZFIN;Acc:ZDB-GENE-061009-14]
45. si:dkey-16p6.1_2 ENSDARG00000088245, ENSDARG00000089179, ENSDARG00000090033, ENSDARG00000090192, ENSDARG00000090734, ENSDARG00000091746, ENSDARG00000098189, ENSDARG00000098515, ENSDARG00000099262, ENSDARG00000100061, ENSDARG00000100164, ENSDARG00000101351, ENSDARG00000101689, ENSDARG00000101828, ENSDARG00000102212, ENSDARG00000104416, ENSDARG00000104897, ENSDARG00000105266, ENSDARG00000111518 1 1 - - - - - - 1.000 - - si:dkey-16p6.1 [Source:ZFIN;Acc:ZDB-GENE-081103-43]
46. SIKE1 2 1 - - - - - - 1.000 - - suppressor of IKBKE 1, transcript variant X3
47. CYP27A1_2 CYP27A1_2 5 1 - - - - - - 1.000 - -
48. pigr ENSDARG00000101890 10 1 - - - - - - 1.000 - - polymeric immunoglobulin receptor [Source:ZFIN;Acc:ZDB-GENE-060503-327]
49. sh2d1aa ENSDARG00000095348 4 1 - - - - - - 1.000 - - SH2 domain containing 1A duplicate a [Source:ZFIN;Acc:ZDB-GENE-060526-212]
50. grk7b ENSDARG00000055534 17 1 - - - - - - 1.000 - - G protein-coupled receptor kinase 7b [Source:ZFIN;Acc:ZDB-GENE-030904-3]
51. satb2 ENSDARG00000061885 6 1 - - - - - - 1.000 - - SATB homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-070912-212]
52. si:dkeyp-91h9.1 si:dkeyp-91h9.1 2 1 - - - - - - 1.000 - -
53. PCDH10 PCDH10 7 1 - - - - - - 1.000 - -
54. tbx5b ENSDARG00000092060 37 1 - - - - - - 1.000 - - T-box 5b [Source:ZFIN;Acc:ZDB-GENE-060601-2]
55. cx55.5 13 1 - - - - - - 1.000 - - connexin 55.5, transcript variant X1
56. zgc:152977 ENSDARG00000077178 59 1 - - - - - - 1.000 - - zgc:152977 [Source:ZFIN;Acc:ZDB-GENE-060825-353]
57. CT583709.2 CT583709.2 55 1 1.000 - - - - - - - -
58. gcnt3 ENSDARG00000060471 37 1 - - - - - - 1.000 - - glucosaminyl (N-acetyl) transferase 3, mucin type [Source:ZFIN;Acc:ZDB-GENE-110411-253]
59. pygl ENSDARG00000002197 192 1 1.000 - - - - - - - - phosphorylase, glycogen, liver [Source:ZFIN;Acc:ZDB-GENE-041205-1]
60. CABZ01002626.1 CABZ01002626.1 29 1 - - - - - - 1.000 - -
61. EPM2AIP1 EPM2AIP1 4 1 1.000 - - - - - - - -
62. CABZ01034857.1 CABZ01034857.1 1 1 - - - - - - 1.000 - -
63. AL935272.2 AL935272.2 37 1 1.000 - - - - - - - -
64. si:dkey-47k20.6 si:dkey-47k20.6 2 1 - - - - - - 1.000 - -
65. chrm2a ENSDARG00000098612 5 1 1.000 - - - - - - - - cholinergic receptor, muscarinic 2a [Source:ZFIN;Acc:ZDB-GENE-030314-1]
66. CECR6 25 1 - - - - - - 1.000 - - cat eye syndrome chromosome region, candidate 6
67. fam73b 76 1 1.000 - - - - - - - - family with sequence similarity 73, member B
68. si:ch73-77n15.1 si:ch73-77n15.1 2 1 - - - - - - 1.000 - -
69. CLNK 8 1 - - - - - - 1.000 - - cytokine dependent hematopoietic cell linker
70. si:ch1073-181h11.2 ENSDARG00000103883 24 1 - - - - - - 1.000 - - si:ch1073-181h11.2 [Source:ZFIN;Acc:ZDB-GENE-081031-58]
71. si:ch211-122l24.2 si:ch211-122l24.2 1 1 1.000 - - - - - - - -
72. chrna9 ENSDARG00000054680 4 1 1.000 - - - - - - - - cholinergic receptor, nicotinic, alpha 9 [Source:ZFIN;Acc:ZDB-GENE-090312-63]
73. BTBD17_1 BTBD17_1 42 1 1.000 - - - - - - - -
74. mtus2 mtus2 22 1 - - - - - - 1.000 - -
75. mmrn2a ENSDARG00000076135 37 1 - - - - - - 1.000 - - multimerin 2a [Source:ZFIN;Acc:ZDB-GENE-080424-3]
76. gata4 ENSDARG00000098952 11 1 - - - - - - 1.000 - - GATA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-980526-476]
77. zgc:171551 ENSDARG00000073708, ENSDARG00000111940 24 1 - - - - - - 1.000 - - zgc:171551 [Source:ZFIN;Acc:ZDB-GENE-080220-8]
78. aspscr1_1 ENSDARG00000105321 4 1 1.000 - - - - - - - - alveolar soft part sarcoma chromosome region, candidate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-31]
79. irgq2 ENSDARG00000068657 4 1 - - - - - - 1.000 - - immunity-related GTPase family, q2 [Source:ZFIN;Acc:ZDB-GENE-051212-7]
80. ZC3H12A ENSDARG00000005271 5 1 - - - - - - 1.000 - - zinc finger CCCH-type containing 12A [Source:ZFIN;Acc:ZDB-GENE-110411-6]
81. GALNT9 ENSDARG00000006832 120 1 1.000 - - - - - - - - polypeptide N-acetylgalactosaminyltransferase 9 [Source:ZFIN;Acc:ZDB-GENE-060526-21]
82. cyp11a1 ENSDARG00000002347, ENSDARG00000111941 209 1 - - - - - - 1.000 - - cytochrome P450, family 11, subfamily A, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-010306-1]
83. dbpa ENSDARG00000063014 107 1 - - - - - - 1.000 - - D site albumin promoter binding protein a [Source:ZFIN;Acc:ZDB-GENE-060503-802]
84. XKR8 XKR8 9 1 - - - - - - 1.000 - -
85. pex10 ENSDARG00000041511 52 1 1.000 - - - - - - - - peroxisomal biogenesis factor 10 [Source:ZFIN;Acc:ZDB-GENE-041010-71]
86. CU929052.1 CU929052.1 642 1 - - - - - - 1.000 - -
87. BX511021.2 ENSDARG00000097646 5 1 - - - - - - 1.000 - -
88. si:ch211-222k6.2 ENSDARG00000087046 144 1 1.000 - - - - - - - - si:ch211-222k6.2 [Source:ZFIN;Acc:ZDB-GENE-030131-9038]
89. SNORA63 SNORA63 7 1 1.000 - - - - - - - -
90. ncanb ENSDARG00000005783 22 1 1.000 - - - - - - - - neurocan b [Source:ZFIN;Acc:ZDB-GENE-050208-586]
91. CR388163.4 CR388163.4 4 1 - - - - - - 1.000 - -
92. nog2 ENSDARG00000043066 233 1 1.000 - - - - - - - - noggin 2 [Source:ZFIN;Acc:ZDB-GENE-991206-14]
93. BX537305.1 ENSDARG00000113834 10 1 - - - - - - 1.000 - -
94. six6a ENSDARG00000025187 40 1 1.000 - - - - - - - - SIX homeobox 6a [Source:ZFIN;Acc:ZDB-GENE-040426-1282]
95. EP400 ENSDARG00000100965 45 1 - - - - - - 1.000 - - E1A binding protein p400 [Source:ZFIN;Acc:ZDB-GENE-081104-186]
96. si:ch211-283l16.1 ENSDARG00000112586 131 1 - - - - - - 1.000 - - si:ch211-283l16.1 [Source:ZFIN;Acc:ZDB-GENE-110913-44]
97. WDPCP ENSDARG00000074590 35 1 1.000 - - - - - - - - WD repeat containing planar cell polarity effector [Source:ZFIN;Acc:ZDB-GENE-100405-4]
98. FRMD7 ENSDARG00000068958 17 1 - - - - - - 1.000 - - FERM domain containing 7 [Source:ZFIN;Acc:ZDB-GENE-060825-67]
99. gpr12 ENSDARG00000062934 7 1 1.000 - - - - - - - - G protein-coupled receptor 12 [Source:ZFIN;Acc:ZDB-GENE-100209-3]
100. si:ch211-239f4.6 ENSDARG00000093347 2 1 - - - - - - 1.000 - - si:ch211-239f4.6 [Source:ZFIN;Acc:ZDB-GENE-061009-18]

There are 1182 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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