Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for ubr1

Gene Name Gene ID Reads Annotation
ubr1 ENSDARG00000060480 71 ubiquitin protein ligase E3 component n-recognin 1 [Source:ZFIN;Acc:ZDB-GENE-091110-2]










Genes with expression patterns similar to ubr1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ubr1 ENSDARG00000060480 71 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ubiquitin protein ligase E3 component n-recognin 1 [Source:ZFIN;Acc:ZDB-GENE-091110-2]
2. FAM177B 9 1.952 - - - - - 0.952 1.000 - - family with sequence similarity 177 member B
3. fbxo32 ENSDARG00000040277 93 1.952 - - - - - 0.952 1.000 - - F-box protein 32 [Source:ZFIN;Acc:ZDB-GENE-040426-1040]
4. GABRR1 ENSDARG00000043902 71 1.916 - - - - - - 0.924 0.992 - gamma-aminobutyric acid (GABA) A receptor, rho 1 [Source:ZFIN;Acc:ZDB-GENE-040724-212]
5. rabggta ENSDARG00000061024 332 1.823 - 0.915 - - - - 0.908 - - Rab geranylgeranyltransferase subunit alpha [Source:ZFIN;Acc:ZDB-GENE-060929-1042]
6. lcmt1 ENSDARG00000045140, ENSDARG00000111263 413 1.794 - - - - - 0.905 - 0.889 - leucine carboxyl methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040912-75]
7. nitr3a_1 ENSDARG00000110676 44 1.739 0.739 - - - - - 1.000 - - novel immune-type receptor 3a [Source:NCBI gene;Acc:60649]
8. CU469544.1 CU469544.1 219 1.731 - - - - - - 0.758 0.973 -
9. si:dkey-7a20.9 si:dkey-7a20.9 154 1.728 - - - - - 0.876 0.852 - -
10. PRKRIR PRKRIR 261 1.716 - - - - - - 0.845 0.871 -
11. zp2.5 ENSDARG00000086522 15 1.71 - - - - 0.710 - 1.000 - - zona pellucida glycoprotein 2, tandem duplicate 5 [Source:ZFIN;Acc:ZDB-GENE-090306-1]
12. srd5a2a ENSDARG00000043587 21 1.692 - - - - 0.702 - - 0.990 - steroid-5-alpha-reductase, alpha polypeptide 2a [Source:ZFIN;Acc:ZDB-GENE-050417-199]
13. usp8 ENSDARG00000063719 643 1.69 - 0.793 - - - - - 0.897 - ubiquitin specific peptidase 8 [Source:ZFIN;Acc:ZDB-GENE-030131-1949]
14. PPM1J ENSDARG00000074690 109 1.684 0.930 - - - - - 0.754 - - protein phosphatase, Mg2+/Mn2+ dependent, 1J [Source:ZFIN;Acc:ZDB-GENE-091230-9]
15. BX897726.3 BX897726.3 220 1.682 - - - - - 0.727 - 0.955 -
16. spop ENSDARG00000100519 177 1.68 0.721 - - - - - - 0.959 - speckle-type POZ protein [Source:ZFIN;Acc:ZDB-GENE-040426-1378]
17. CU459160.1 CU459160.1 104 1.679 - 0.775 - - - 0.904 - - -
18. psmd2 ENSDARG00000103190 141 1.679 0.729 - - - - - - 0.950 - proteasome 26S subunit, non-ATPase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1480]
19. rab1bb ENSDARG00000056479, ENSDARG00000109723 551 1.676 - 0.783 - - - - - 0.893 - RAB1B, member RAS oncogene family b [Source:ZFIN;Acc:ZDB-GENE-040625-133]
20. cables2b ENSDARG00000017154 131 1.673 - 0.872 - - - - 0.801 - - Cdk5 and Abl enzyme substrate 2b [Source:ZFIN;Acc:ZDB-GENE-090313-249]
21. znf526 ENSDARG00000077143 257 1.646 - - - - - 0.778 0.868 - - zinc finger protein 526 [Source:ZFIN;Acc:ZDB-GENE-100922-260]
22. si:ch211-286m4.1 si:ch211-286m4.1 47 1.642 0.914 - - - 0.728 - - - -
23. EPS8 78 1.628 - 0.828 - - - - 0.800 - - epidermal growth factor receptor pathway substrate 8, transcript variant X14
24. PEG3_2 PEG3_2 468 1.601 - - - - - 0.833 0.768 - -
25. qpctla ENSDARG00000061691 869 1.598 - - - - - 0.800 - 0.798 - glutaminyl-peptide cyclotransferase-like a [Source:ZFIN;Acc:ZDB-GENE-030131-1441]
26. als2b ENSDARG00000076924 738 1.587 - 0.874 - - - - - 0.713 - amyotrophic lateral sclerosis 2b (juvenile) [Source:ZFIN;Acc:ZDB-GENE-080929-1]
27. zgc:194314 zgc:194314 982 1.557 - - - - - 0.770 0.787 - -
28. gpr98 gpr98 717 1.524 0.768 - - - - - - 0.756 -
29. ptprn2 ENSDARG00000035970, ENSDARG00000114075 354 1.518 0.761 - - - - - - 0.757 - protein tyrosine phosphatase, receptor type, N polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-030131-3758]
30. flvcr2b ENSDARG00000031506 170 1.51 - 0.752 - - - - 0.758 - - feline leukemia virus subgroup C cellular receptor family, member 2b [Source:ZFIN;Acc:ZDB-GENE-041210-312]
31. smim15 ENSDARG00000086699, ENSDARG00000114331 1945 1.503 - 0.798 - - - - - 0.705 - small integral membrane protein 15 [Source:ZFIN;Acc:ZDB-GENE-070410-48]
32. THAP6 THAP6 57 1.487 0.768 - - - - - 0.719 - -
33. si:dkey-220a11.10 si:dkey-220a11.10 258 1.486 - 0.741 - - - - 0.745 - -
34. zgc:114037 63 1.469 0.762 0.707 - - - - - - - zgc:114037
35. si:dkey-157l19.2 ENSDARG00000060340 635 1.462 - 0.754 - - - 0.708 - - - si:dkey-157l19.2 [Source:ZFIN;Acc:ZDB-GENE-090313-190]
36. zgc:194398 ENSDARG00000078250 815 1.453 - 0.714 - - - 0.739 - - - zgc:194398 [Source:ZFIN;Acc:ZDB-GENE-081022-111]
37. C9H2orf40 C9H2orf40 212 1.441 0.711 0.730 - - - - - - -
38. nog2 ENSDARG00000043066 233 1 1.000 - - - - - - - - noggin 2 [Source:ZFIN;Acc:ZDB-GENE-991206-14]
39. MMP20 MMP20 1 1 - - - - - - 1.000 - -
40. taar16a ENSDARG00000054237 1 1 1.000 - - - - - - - - trace amine associated receptor 16a [Source:ZFIN;Acc:ZDB-GENE-100514-1]
41. zgc:112965 ENSDARG00000007787 5 1 1.000 - - - - - - - - zgc:112965 [Source:ZFIN;Acc:ZDB-GENE-050522-10]
42. si:ch211-226h8.4 ENSDARG00000086221, ENSDARG00000113147 38 1 - - - - - - 1.000 - - si:ch211-226h8.4 [Source:ZFIN;Acc:ZDB-GENE-050208-376]
43. PLEKHS1_2 PLEKHS1_2 21 1 - - - - - - 1.000 - -
44. CU896645.1 CU896645.1 10 1 1.000 - - - - - - - -
45. 5S_rRNA_31 5S_rRNA_31 3 1 1.000 - - - - - - - -
46. GABRA3 ENSDARG00000090883 5 1 1.000 - - - - - - - - gamma-aminobutyric acid (GABA) A receptor, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-091204-365]
47. GALNTL6 ENSDARG00000040048 33 1 - - - - - - 1.000 - - polypeptide N-acetylgalactosaminyltransferase like 6 [Source:HGNC Symbol;Acc:HGNC:33844]
48. cpne5 cpne5 16 1 1.000 - - - - - - - -
49. wnt3a ENSDARG00000058822 5 1 - - - - - - 1.000 - - wingless-type MMTV integration site family, member 3A [Source:ZFIN;Acc:ZDB-GENE-001106-1]
50. SEMA6B SEMA6B 35 1 - - - - - - 1.000 - -
51. CU855711.1 ENSDARG00000088643 6 1 - - - - - - 1.000 - - legumain-like [Source:NCBI gene;Acc:108191752]
52. six6a ENSDARG00000025187 40 1 1.000 - - - - - - - - SIX homeobox 6a [Source:ZFIN;Acc:ZDB-GENE-040426-1282]
53. fscn1b ENSDARG00000037747, ENSDARG00000111370 75 1 - - - - - - 1.000 - - fascin actin-bundling protein 1b [Source:ZFIN;Acc:ZDB-GENE-120507-1]
54. SLC2A13 SLC2A13 74 1 1.000 - - - - - - - -
55. gabrr2b ENSDARG00000014057 9 1 - - - - - - 1.000 - - gamma-aminobutyric acid (GABA) A receptor, rho 2b [Source:ZFIN;Acc:ZDB-GENE-041014-174]
56. si:ch211-218m3.16 ENSDARG00000044336 33 1 - - - - - - 1.000 - - si:ch211-218m3.16 [Source:ZFIN;Acc:ZDB-GENE-091116-19]
57. rspo1 ENSDARG00000104340, ENSDARG00000111655 13 1 - - - - - - 1.000 - - R-spondin 1 [Source:ZFIN;Acc:ZDB-GENE-040718-44]
58. IYD IYD 8 1 - - - - - - 1.000 - -
59. urgcp ENSDARG00000036767 6 1 - - - - - - 1.000 - - upregulator of cell proliferation [Source:ZFIN;Acc:ZDB-GENE-120215-160]
60. zgc:114037_4 57 1 1.000 - - - - - - - - zgc:114037
61. si:dkey-56i24.1 ENSDARG00000053345, ENSDARG00000078152 11 1 - - - - - - 1.000 - - si:dkey-56i24.1 [Source:ZFIN;Acc:ZDB-GENE-081105-8]
62. si:dkey-28k24.2 ENSDARG00000095106, ENSDARG00000104787, ENSDARG00000110878, ENSDARG00000116574 1 1 - - - - - - 1.000 - - si:dkey-28k24.2 [Source:ZFIN;Acc:ZDB-GENE-121213-4]
63. si:ch73-77n15.1 si:ch73-77n15.1 2 1 - - - - - - 1.000 - -
64. BX897747.1 ENSDARG00000117746 11 1 1.000 - - - - - - - -
65. CABZ01069020.1 ENSDARG00000105806 19 1 1.000 - - - - - - - - si:cabz01069020.1 [Source:NCBI gene;Acc:100332930]
66. top3b ENSDARG00000027586 8 1 - - - - - - 1.000 - - DNA topoisomerase III beta [Source:ZFIN;Acc:ZDB-GENE-070705-37]
67. lim2.1 ENSDARG00000068974, ENSDARG00000114525 233 1 - - - - - - 1.000 - - lens intrinsic membrane protein 2.1 [Source:ZFIN;Acc:ZDB-GENE-050522-398]
68. si:ch211-239f4.6 ENSDARG00000093347 2 1 - - - - - - 1.000 - - si:ch211-239f4.6 [Source:ZFIN;Acc:ZDB-GENE-061009-18]
69. si:ch211-167j6.3 ENSDARG00000095504 5 1 1.000 - - - - - - - - si:ch211-167j6.3 [Source:ZFIN;Acc:ZDB-GENE-070912-145]
70. bcat1 ENSDARG00000045568 39 1 1.000 - - - - - - - - branched chain amino-acid transaminase 1, cytosolic [Source:ZFIN;Acc:ZDB-GENE-030131-9358]
71. si:ch73-248e21.5 ENSDARG00000088283 19 1 - - - - - - 1.000 - - si:ch73-248e21.5 [Source:ZFIN;Acc:ZDB-GENE-120215-255]
72. irgq2 ENSDARG00000068657 4 1 - - - - - - 1.000 - - immunity-related GTPase family, q2 [Source:ZFIN;Acc:ZDB-GENE-051212-7]
73. si:dkey-47k20.6 si:dkey-47k20.6 2 1 - - - - - - 1.000 - -
74. pxn pxn 10 1 - - - - - - 1.000 - -
75. cart1 ENSDARG00000070930 46 1 - - - - - - 1.000 - - cocaine- and amphetamine-regulated transcript 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8025]
76. dctn1a ENSDARG00000019743 45 1 - - - - - - 1.000 - - dynactin 1a [Source:ZFIN;Acc:ZDB-GENE-070117-2205]
77. zgc:172128 ENSDARG00000101883, ENSDARG00000104208 28 1 1.000 - - - - - - - - zgc:172128 [Source:ZFIN;Acc:ZDB-GENE-080220-2]
78. si:ch211-233m11.3 si:ch211-233m11.3 1 1 - - - - - - 1.000 - -
79. si:ch211-234c11.3_1 ENSDARG00000093615 10 1 - - - - - - 1.000 - - si:ch211-234c11.3 [Source:ZFIN;Acc:ZDB-GENE-110914-93]
80. zgc:174710 13 1 1.000 - - - - - - - - zgc:174710
81. gpr37l1b ENSDARG00000056774, ENSDARG00000114481 143 1 1.000 - - - - - - - - G protein-coupled receptor 37 like 1b [Source:ZFIN;Acc:ZDB-GENE-081104-324]
82. pdcl ENSDARG00000009480 12 1 1.000 - - - - - - - - phosducin-like [Source:ZFIN;Acc:ZDB-GENE-030131-2365]
83. si:dkey-286j17.3 si:dkey-286j17.3 8 1 - - - - - - 1.000 - -
84. sh2d1aa ENSDARG00000095348 4 1 - - - - - - 1.000 - - SH2 domain containing 1A duplicate a [Source:ZFIN;Acc:ZDB-GENE-060526-212]
85. mmrn2a ENSDARG00000076135 37 1 - - - - - - 1.000 - - multimerin 2a [Source:ZFIN;Acc:ZDB-GENE-080424-3]
86. tbx5b ENSDARG00000092060 37 1 - - - - - - 1.000 - - T-box 5b [Source:ZFIN;Acc:ZDB-GENE-060601-2]
87. AL935272.2 AL935272.2 37 1 1.000 - - - - - - - -
88. chrna9 ENSDARG00000054680 4 1 1.000 - - - - - - - - cholinergic receptor, nicotinic, alpha 9 [Source:ZFIN;Acc:ZDB-GENE-090312-63]
89. CR387932.1 ENSDARG00000097344 2 1 - - - - - - 1.000 - -
90. BX901974.1 ENSDARG00000067592 2 1 - - - - - - 1.000 - -
91. zgc:165409_1 ENSDARG00000091385 65 1 1.000 - - - - - - - - zgc:165409 [Source:ZFIN;Acc:ZDB-GENE-070615-19]
92. CNTNAP1 ENSDARG00000074524 73 1 1.000 - - - - - - - - contactin associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-030916-2]
93. si:dkey-16p6.1_2 ENSDARG00000088245, ENSDARG00000089179, ENSDARG00000090033, ENSDARG00000090192, ENSDARG00000090734, ENSDARG00000091746, ENSDARG00000098189, ENSDARG00000098515, ENSDARG00000099262, ENSDARG00000100061, ENSDARG00000100164, ENSDARG00000101351, ENSDARG00000101689, ENSDARG00000101828, ENSDARG00000102212, ENSDARG00000104416, ENSDARG00000104897, ENSDARG00000105266, ENSDARG00000111518 1 1 - - - - - - 1.000 - - si:dkey-16p6.1 [Source:ZFIN;Acc:ZDB-GENE-081103-43]
94. KCNIP4 ENSDARG00000088100 86 1 1.000 - - - - - - - - potassium voltage-gated channel interacting protein 4 [Source:HGNC Symbol;Acc:HGNC:30083]
95. TRIM8 TRIM8 5 1 - - - - - - 1.000 - -
96. XKR8 XKR8 9 1 - - - - - - 1.000 - -
97. LRRC69 LRRC69 1 1 - - - - - - 1.000 - -
98. BX511021.2 ENSDARG00000097646 5 1 - - - - - - 1.000 - -
99. CLNK 8 1 - - - - - - 1.000 - - cytokine dependent hematopoietic cell linker
100. si:dkey-14d8.19 si:dkey-14d8.19 12 1 1.000 - - - - - - - -

There are 1182 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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