Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for ubr1

Gene Name Gene ID Reads Annotation
ubr1 ENSDARG00000060480 71 ubiquitin protein ligase E3 component n-recognin 1 [Source:ZFIN;Acc:ZDB-GENE-091110-2]










Genes with expression patterns similar to ubr1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ubr1 ENSDARG00000060480 71 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ubiquitin protein ligase E3 component n-recognin 1 [Source:ZFIN;Acc:ZDB-GENE-091110-2]
2. FAM177B 9 1.952 - - - - - 0.952 1.000 - - family with sequence similarity 177 member B
3. fbxo32 ENSDARG00000040277 93 1.952 - - - - - 0.952 1.000 - - F-box protein 32 [Source:ZFIN;Acc:ZDB-GENE-040426-1040]
4. GABRR1 ENSDARG00000043902 71 1.916 - - - - - - 0.924 0.992 - gamma-aminobutyric acid (GABA) A receptor, rho 1 [Source:ZFIN;Acc:ZDB-GENE-040724-212]
5. rabggta ENSDARG00000061024 332 1.823 - 0.915 - - - - 0.908 - - Rab geranylgeranyltransferase subunit alpha [Source:ZFIN;Acc:ZDB-GENE-060929-1042]
6. lcmt1 ENSDARG00000045140, ENSDARG00000111263 413 1.794 - - - - - 0.905 - 0.889 - leucine carboxyl methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040912-75]
7. nitr3a_1 ENSDARG00000110676 44 1.739 0.739 - - - - - 1.000 - - novel immune-type receptor 3a [Source:NCBI gene;Acc:60649]
8. CU469544.1 CU469544.1 219 1.731 - - - - - - 0.758 0.973 -
9. si:dkey-7a20.9 si:dkey-7a20.9 154 1.728 - - - - - 0.876 0.852 - -
10. PRKRIR PRKRIR 261 1.716 - - - - - - 0.845 0.871 -
11. zp2.5 ENSDARG00000086522 15 1.71 - - - - 0.710 - 1.000 - - zona pellucida glycoprotein 2, tandem duplicate 5 [Source:ZFIN;Acc:ZDB-GENE-090306-1]
12. srd5a2a ENSDARG00000043587 21 1.692 - - - - 0.702 - - 0.990 - steroid-5-alpha-reductase, alpha polypeptide 2a [Source:ZFIN;Acc:ZDB-GENE-050417-199]
13. usp8 ENSDARG00000063719 643 1.69 - 0.793 - - - - - 0.897 - ubiquitin specific peptidase 8 [Source:ZFIN;Acc:ZDB-GENE-030131-1949]
14. PPM1J ENSDARG00000074690 109 1.684 0.930 - - - - - 0.754 - - protein phosphatase, Mg2+/Mn2+ dependent, 1J [Source:ZFIN;Acc:ZDB-GENE-091230-9]
15. BX897726.3 BX897726.3 220 1.682 - - - - - 0.727 - 0.955 -
16. spop ENSDARG00000100519 177 1.68 0.721 - - - - - - 0.959 - speckle-type POZ protein [Source:ZFIN;Acc:ZDB-GENE-040426-1378]
17. CU459160.1 CU459160.1 104 1.679 - 0.775 - - - 0.904 - - -
18. psmd2 ENSDARG00000103190 141 1.679 0.729 - - - - - - 0.950 - proteasome 26S subunit, non-ATPase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1480]
19. rab1bb ENSDARG00000056479, ENSDARG00000109723 551 1.676 - 0.783 - - - - - 0.893 - RAB1B, member RAS oncogene family b [Source:ZFIN;Acc:ZDB-GENE-040625-133]
20. cables2b ENSDARG00000017154 131 1.673 - 0.872 - - - - 0.801 - - Cdk5 and Abl enzyme substrate 2b [Source:ZFIN;Acc:ZDB-GENE-090313-249]
21. znf526 ENSDARG00000077143 257 1.646 - - - - - 0.778 0.868 - - zinc finger protein 526 [Source:ZFIN;Acc:ZDB-GENE-100922-260]
22. si:ch211-286m4.1 si:ch211-286m4.1 47 1.642 0.914 - - - 0.728 - - - -
23. EPS8 78 1.628 - 0.828 - - - - 0.800 - - epidermal growth factor receptor pathway substrate 8, transcript variant X14
24. PEG3_2 PEG3_2 468 1.601 - - - - - 0.833 0.768 - -
25. qpctla ENSDARG00000061691 869 1.598 - - - - - 0.800 - 0.798 - glutaminyl-peptide cyclotransferase-like a [Source:ZFIN;Acc:ZDB-GENE-030131-1441]
26. als2b ENSDARG00000076924 738 1.587 - 0.874 - - - - - 0.713 - amyotrophic lateral sclerosis 2b (juvenile) [Source:ZFIN;Acc:ZDB-GENE-080929-1]
27. zgc:194314 zgc:194314 982 1.557 - - - - - 0.770 0.787 - -
28. gpr98 gpr98 717 1.524 0.768 - - - - - - 0.756 -
29. ptprn2 ENSDARG00000035970, ENSDARG00000114075 354 1.518 0.761 - - - - - - 0.757 - protein tyrosine phosphatase, receptor type, N polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-030131-3758]
30. flvcr2b ENSDARG00000031506 170 1.51 - 0.752 - - - - 0.758 - - feline leukemia virus subgroup C cellular receptor family, member 2b [Source:ZFIN;Acc:ZDB-GENE-041210-312]
31. smim15 ENSDARG00000086699, ENSDARG00000114331 1945 1.503 - 0.798 - - - - - 0.705 - small integral membrane protein 15 [Source:ZFIN;Acc:ZDB-GENE-070410-48]
32. THAP6 THAP6 57 1.487 0.768 - - - - - 0.719 - -
33. si:dkey-220a11.10 si:dkey-220a11.10 258 1.486 - 0.741 - - - - 0.745 - -
34. zgc:114037 63 1.469 0.762 0.707 - - - - - - - zgc:114037
35. si:dkey-157l19.2 ENSDARG00000060340 635 1.462 - 0.754 - - - 0.708 - - - si:dkey-157l19.2 [Source:ZFIN;Acc:ZDB-GENE-090313-190]
36. zgc:194398 ENSDARG00000078250 815 1.453 - 0.714 - - - 0.739 - - - zgc:194398 [Source:ZFIN;Acc:ZDB-GENE-081022-111]
37. C9H2orf40 C9H2orf40 212 1.441 0.711 0.730 - - - - - - -
38. si:dkey-150h13.1 si:dkey-150h13.1 1 1 - - - - - - 1.000 - -
39. BX901974.1 ENSDARG00000067592 2 1 - - - - - - 1.000 - -
40. st6galnac ENSDARG00000086292 29 1 - - - - - - 1.000 - - ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase [Source:ZFIN;Acc:ZDB-GENE-050309-58]
41. si:ch211-197k17.3 ENSDARG00000096214 2 1 1.000 - - - - - - - - si:ch211-197k17.3 [Source:ZFIN;Acc:ZDB-GENE-110914-193]
42. bcat1 ENSDARG00000045568 39 1 1.000 - - - - - - - - branched chain amino-acid transaminase 1, cytosolic [Source:ZFIN;Acc:ZDB-GENE-030131-9358]
43. PGBD4_4 PGBD4_4 15 1 - - - - - - 1.000 - -
44. ucn3l ENSDARG00000087241 29 1 - - - - - - 1.000 - - urocortin 3, like [Source:ZFIN;Acc:ZDB-GENE-060130-250]
45. nanog ENSDARG00000075113 10 1 - - - - - - 1.000 - - nanog homeobox [Source:ZFIN;Acc:ZDB-GENE-030131-5486]
46. zgc:152977 ENSDARG00000077178 59 1 - - - - - - 1.000 - - zgc:152977 [Source:ZFIN;Acc:ZDB-GENE-060825-353]
47. PLEKHS1_2 PLEKHS1_2 21 1 - - - - - - 1.000 - -
48. si:dkeyp-67a8.4 ENSDARG00000090099, ENSDARG00000092823 1 1 1.000 - - - - - - - - si:dkeyp-67a8.4 [Source:ZFIN;Acc:ZDB-GENE-070912-666]
49. efr3ba ENSDARG00000033516 19 1 1.000 - - - - - - - - EFR3 homolog Ba (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030616-64]
50. ZC3H12A ENSDARG00000005271 5 1 - - - - - - 1.000 - - zinc finger CCCH-type containing 12A [Source:ZFIN;Acc:ZDB-GENE-110411-6]
51. si:ch211-122l24.2 si:ch211-122l24.2 1 1 1.000 - - - - - - - -
52. CU672227.1 ENSDARG00000105807 15 1 - - - - - - 1.000 - -
53. sh2d1aa ENSDARG00000095348 4 1 - - - - - - 1.000 - - SH2 domain containing 1A duplicate a [Source:ZFIN;Acc:ZDB-GENE-060526-212]
54. b3gat3 ENSDARG00000001939 58 1 - - - - - - 1.000 - - beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I) [Source:ZFIN;Acc:ZDB-GENE-020419-3]
55. si:ch211-233h19.2 ENSDARG00000042213 47 1 - - - - - - 1.000 - - si:ch211-233h19.2 [Source:ZFIN;Acc:ZDB-GENE-061009-14]
56. PLEKHG4B PLEKHG4B 1 1 1.000 - - - - - - - -
57. cyp2n13 ENSDARG00000042953 10 1 - - - - - - 1.000 - - cytochrome P450, family 2, subfamily N, polypeptide 13 [Source:ZFIN;Acc:ZDB-GENE-041001-158]
58. CR762480.5 CR762480.5 1 1 - - - - - - 1.000 - -
59. gabrr2a ENSDARG00000052982 21 1 1.000 - - - - - - - - gamma-aminobutyric acid (GABA) A receptor, rho 2a [Source:ZFIN;Acc:ZDB-GENE-060825-164]
60. si:ch211-167j6.3 ENSDARG00000095504 5 1 1.000 - - - - - - - - si:ch211-167j6.3 [Source:ZFIN;Acc:ZDB-GENE-070912-145]
61. pth2r ENSDARG00000006678, ENSDARG00000112414 46 1 - - - - - - 1.000 - - parathyroid hormone 2 receptor [Source:ZFIN;Acc:ZDB-GENE-991123-10]
62. prpf4 ENSDARG00000067639, ENSDARG00000114457, ENSDARG00000114653 10 1 1.000 - - - - - - - - PRP4 pre-mRNA processing factor 4 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-5143]
63. cyp11a1 ENSDARG00000002347, ENSDARG00000111941 209 1 - - - - - - 1.000 - - cytochrome P450, family 11, subfamily A, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-010306-1]
64. lyve1a ENSDARG00000075833 25 1 1.000 - - - - - - - - lymphatic vessel endothelial hyaluronic receptor 1a [Source:ZFIN;Acc:ZDB-GENE-031118-138]
65. pygl ENSDARG00000002197 192 1 1.000 - - - - - - - - phosphorylase, glycogen, liver [Source:ZFIN;Acc:ZDB-GENE-041205-1]
66. slc6a2 ENSDARG00000016141 49 1 - - - - - - 1.000 - - solute carrier family 6 (neurotransmitter transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-110408-4]
67. ATP13A5 ATP13A5 13 1 - - - - - - 1.000 - -
68. si:ch211-190k17.13 si:ch211-190k17.13 48 1 - - - - - - 1.000 - -
69. phf21aa ENSDARG00000006878 31 1 - - - - - - 1.000 - - PHD finger protein 21Aa [Source:ZFIN;Acc:ZDB-GENE-050208-99]
70. si:ch211-222k6.2 ENSDARG00000087046 144 1 1.000 - - - - - - - - si:ch211-222k6.2 [Source:ZFIN;Acc:ZDB-GENE-030131-9038]
71. spata20 ENSDARG00000013880 46 1 1.000 - - - - - - - - spermatogenesis associated 20 [Source:ZFIN;Acc:ZDB-GENE-030131-7269]
72. U1_35 U1_35 1 1 - - - - - - 1.000 - -
73. zgc:172133 ENSDARG00000075248 6 1 - - - - - - 1.000 - - zgc:172133 [Source:ZFIN;Acc:ZDB-GENE-080204-48]
74. gpr37l1b ENSDARG00000056774, ENSDARG00000114481 143 1 1.000 - - - - - - - - G protein-coupled receptor 37 like 1b [Source:ZFIN;Acc:ZDB-GENE-081104-324]
75. slc6a18 ENSDARG00000068387 6 1 - - - - - - 1.000 - - solute carrier family 6 (neutral amino acid transporter), member 18 [Source:ZFIN;Acc:ZDB-GENE-080219-9]
76. gata4 ENSDARG00000098952 11 1 - - - - - - 1.000 - - GATA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-980526-476]
77. CLNK 8 1 - - - - - - 1.000 - - cytokine dependent hematopoietic cell linker
78. pdcl ENSDARG00000009480 12 1 1.000 - - - - - - - - phosducin-like [Source:ZFIN;Acc:ZDB-GENE-030131-2365]
79. si:ch73-77n15.1 si:ch73-77n15.1 2 1 - - - - - - 1.000 - -
80. ncanb ENSDARG00000005783 22 1 1.000 - - - - - - - - neurocan b [Source:ZFIN;Acc:ZDB-GENE-050208-586]
81. FRMD7 ENSDARG00000068958 17 1 - - - - - - 1.000 - - FERM domain containing 7 [Source:ZFIN;Acc:ZDB-GENE-060825-67]
82. BX897747.1 ENSDARG00000117746 11 1 1.000 - - - - - - - -
83. C20H2orf70 C20H2orf70 8 1 1.000 - - - - - - - -
84. dctn1a ENSDARG00000019743 45 1 - - - - - - 1.000 - - dynactin 1a [Source:ZFIN;Acc:ZDB-GENE-070117-2205]
85. WDPCP ENSDARG00000074590 35 1 1.000 - - - - - - - - WD repeat containing planar cell polarity effector [Source:ZFIN;Acc:ZDB-GENE-100405-4]
86. si:dkey-47k20.6 si:dkey-47k20.6 2 1 - - - - - - 1.000 - -
87. PCDH10 PCDH10 7 1 - - - - - - 1.000 - -
88. GRINA GRINA 12 1 - - - - - - 1.000 - -
89. DNER ENSDARG00000061031 123 1 1.000 - - - - - - - - delta/notch-like EGF repeat containing [Source:ZFIN;Acc:ZDB-GENE-130502-1]
90. zgc:112965 ENSDARG00000007787 5 1 1.000 - - - - - - - - zgc:112965 [Source:ZFIN;Acc:ZDB-GENE-050522-10]
91. CABZ01069020.1 ENSDARG00000105806 19 1 1.000 - - - - - - - - si:cabz01069020.1 [Source:NCBI gene;Acc:100332930]
92. zgc:152938 ENSDARG00000102586 97 1 - - - - - - 1.000 - - zgc:152938 [Source:ZFIN;Acc:ZDB-GENE-061013-458]
93. si:dkey-148e22.3 si:dkey-148e22.3 4 1 - - - - - - 1.000 - -
94. gpr12 ENSDARG00000062934 7 1 1.000 - - - - - - - - G protein-coupled receptor 12 [Source:ZFIN;Acc:ZDB-GENE-100209-3]
95. zgc:165409_1 ENSDARG00000091385 65 1 1.000 - - - - - - - - zgc:165409 [Source:ZFIN;Acc:ZDB-GENE-070615-19]
96. zgc:172128 ENSDARG00000101883, ENSDARG00000104208 28 1 1.000 - - - - - - - - zgc:172128 [Source:ZFIN;Acc:ZDB-GENE-080220-2]
97. si:ch73-189n23.1 ENSDARG00000086247 15 1 - - - - - - 1.000 - - si:ch73-189n23.1 [Source:ZFIN;Acc:ZDB-GENE-070705-217]
98. MMP20 MMP20 1 1 - - - - - - 1.000 - -
99. si:ch1073-181h11.2 ENSDARG00000103883 24 1 - - - - - - 1.000 - - si:ch1073-181h11.2 [Source:ZFIN;Acc:ZDB-GENE-081031-58]
100. XKR8 XKR8 9 1 - - - - - - 1.000 - -

There are 1182 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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