Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for ubp1

Gene Name Gene ID Reads Annotation
ubp1 ENSDARG00000018000 1047 upstream binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-060503-870]










Genes with expression patterns similar to ubp1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ubp1 ENSDARG00000018000 1047 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 upstream binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-060503-870]
2. GPN1 ENSDARG00000043928 566 2.341 - - - 0.723 0.799 - 0.819 - - GPN-loop GTPase 1 [Source:ZFIN;Acc:ZDB-GENE-040801-154]
3. arl16 ENSDARG00000059498, ENSDARG00000110386 229 1.749 - - - - - 0.940 0.809 - - ADP-ribosylation factor-like 16 [Source:ZFIN;Acc:ZDB-GENE-070410-114]
4. fstl3 ENSDARG00000025670 41 1.749 - - - - - 0.949 - - 0.800 follistatin-like 3 (secreted glycoprotein) [Source:ZFIN;Acc:ZDB-GENE-050913-111]
5. kctd1 ENSDARG00000074056 652 1.746 - - - - - 0.952 0.794 - - potassium channel tetramerization domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040724-194]
6. plk4 ENSDARG00000004576 688 1.733 - - - - 0.829 0.904 - - - polo-like kinase 4 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030619-14]
7. lmbrd1 ENSDARG00000104223 924 1.721 - - - 0.809 - 0.912 - - - LMBR1 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041212-36]
8. ablim1a ENSDARG00000060149 228 1.72 - - - - - 0.915 - 0.805 - actin binding LIM protein 1a [Source:ZFIN;Acc:ZDB-GENE-080219-41]
9. srpk1b ENSDARG00000031560 2079 1.698 - - - - - 0.887 0.811 - - SRSF protein kinase 1b [Source:ZFIN;Acc:ZDB-GENE-070112-2292]
10. pole ENSDARG00000058533, ENSDARG00000115430 381 1.691 - - - - - 0.916 0.775 - - polymerase (DNA directed), epsilon [Source:ZFIN;Acc:ZDB-GENE-070705-557]
11. cenpk ENSDARG00000039616 744 1.691 - - - - - 0.942 - 0.749 - centromere protein K [Source:ZFIN;Acc:ZDB-GENE-090313-204]
12. cdk12 ENSDARG00000063726 1220 1.678 - - - - - 0.913 - 0.765 - cyclin-dependent kinase 12 [Source:ZFIN;Acc:ZDB-GENE-081104-294]
13. flrt3 ENSDARG00000076895 3516 1.678 - - - - - 0.930 0.748 - - fibronectin leucine rich transmembrane 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1988]
14. plk1 ENSDARG00000058471, ENSDARG00000111745 7020 1.665 - - - - - 0.850 0.815 - - polo-like kinase 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-021115-7]
15. nin ENSDARG00000060298 1558 1.661 - - - - - 0.877 - 0.784 - ninein (GSK3B interacting protein) [Source:ZFIN;Acc:ZDB-GENE-070725-1]
16. nfatc3b ENSDARG00000051729 239 1.658 - - - - - 0.909 0.749 - - nuclear factor of activated T cells 3b [Source:ZFIN;Acc:ZDB-GENE-100922-25]
17. C5H3orf30 C5H3orf30 63 1.652 - - - - - 0.947 0.705 - -
18. TMEM185A TMEM185A 5505 1.648 - - - 0.800 - 0.848 - - -
19. espl1 ENSDARG00000075354 818 1.647 - - - - - 0.904 0.743 - - extra spindle pole bodies like 1, separase [Source:ZFIN;Acc:ZDB-GENE-030131-5188]
20. mkrn2 ENSDARG00000007630 127 1.64 - - - - 0.764 0.876 - - - makorin, ring finger protein, 2 [Source:ZFIN;Acc:ZDB-GENE-020213-2]
21. UBN2 UBN2 557 1.637 - 0.903 - - - - - - 0.734
22. hoxb7a ENSDARG00000056030 1212 1.637 - - - - - 0.917 0.720 - - homeobox B7a [Source:ZFIN;Acc:ZDB-GENE-000329-2]
23. SMC6 ENSDARG00000091821 165 1.63 - - - - 0.800 0.830 - - - structural maintenance of chromosomes 6 [Source:ZFIN;Acc:ZDB-GENE-110303-1]
24. CELF6 ENSDARG00000101933 228 1.629 - - - - 0.775 0.854 - - - CUGBP Elav-like family member 6 [Source:HGNC Symbol;Acc:HGNC:14059]
25. adarb1a ENSDARG00000041609 476 1.628 - - - - - 0.905 - 0.723 - adenosine deaminase, RNA-specific, B1a [Source:ZFIN;Acc:ZDB-GENE-000627-2]
26. gng2_1 ENSDARG00000056831 113 1.625 - - - 0.706 - 0.919 - - - guanine nucleotide binding protein (G protein), gamma 2 [Source:ZFIN;Acc:ZDB-GENE-050417-59]
27. rab14_1 ENSDARG00000074246 481 1.625 - - - - 0.719 0.906 - - - RAB14, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-030826-20]
28. pqbp1 ENSDARG00000029724 1472 1.621 - - - 0.836 - - 0.785 - - polyglutamine binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030616-158]
29. ryk ENSDARG00000007231 1611 1.619 - - - - - 0.834 0.785 - - receptor-like tyrosine kinase [Source:ZFIN;Acc:ZDB-GENE-070209-277]
30. exoc6 ENSDARG00000020521 1533 1.619 - - - - - 0.841 0.778 - - exocyst complex component 6 [Source:ZFIN;Acc:ZDB-GENE-040426-2511]
31. sin3ab ENSDARG00000059812 2140 1.614 - - - 0.865 - 0.749 - - - SIN3 transcription regulator family member Ab [Source:ZFIN;Acc:ZDB-GENE-030131-2066]
32. si:ch211-282j22.3 ENSDARG00000010524 1007 1.614 - - - - - 0.913 0.701 - - si:ch211-282j22.3 [Source:ZFIN;Acc:ZDB-GENE-091113-49]
33. hcfc1b ENSDARG00000012519 3633 1.612 - - - - - 0.863 0.749 - - host cell factor C1b [Source:ZFIN;Acc:ZDB-GENE-030131-2411]
34. rbp7b ENSDARG00000070486, ENSDARG00000111858 449 1.602 - - - - - 0.828 0.774 - - retinol binding protein 7b, cellular [Source:ZFIN;Acc:ZDB-GENE-081022-134]
35. tagln3b ENSDARG00000058394, ENSDARG00000115045 2756 1.597 - 0.724 - - - 0.873 - - - transgelin 3b [Source:ZFIN;Acc:ZDB-GENE-030131-4199]
36. depdc1a ENSDARG00000018165, ENSDARG00000114097 1958 1.594 - - - - 0.714 0.880 - - - DEP domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9827]
37. lmx1ba ENSDARG00000104815 376 1.592 - - - - - 0.883 - 0.709 - LIM homeobox transcription factor 1, beta a [Source:ZFIN;Acc:ZDB-GENE-050114-3]
38. usp6nl ENSDARG00000022187, ENSDARG00000109772 432 1.591 - - - 0.837 - - 0.754 - - USP6 N-terminal like [Source:ZFIN;Acc:ZDB-GENE-041210-192]
39. USP31 ENSDARG00000074017 628 1.587 - - - - 0.743 0.844 - - - ubiquitin specific peptidase 31 [Source:ZFIN;Acc:ZDB-GENE-100210-4]
40. dnmt3 dnmt3 1912 1.587 - - - - - 0.822 0.765 - -
41. stox2a ENSDARG00000070162 1620 1.58 - - - - - 0.859 0.721 - - storkhead box 2a [Source:ZFIN;Acc:ZDB-GENE-090313-101]
42. ift52 ENSDARG00000045025 606 1.579 - - - - - 0.750 0.829 - - intraflagellar transport 52 homolog (Chlamydomonas) [Source:ZFIN;Acc:ZDB-GENE-040614-3]
43. mta3 ENSDARG00000054903, ENSDARG00000113436 353 1.572 - - - - - 0.768 0.804 - - metastasis associated 1 family, member 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6485]
44. dnal1 ENSDARG00000034042 339 1.572 - - - - - 0.865 0.707 - - dynein, axonemal, light chain 1 [Source:ZFIN;Acc:ZDB-GENE-040801-178]
45. ndrg3a ENSDARG00000013087 5581 1.57 - - - - - 0.853 0.717 - - ndrg family member 3a [Source:ZFIN;Acc:ZDB-GENE-980526-124]
46. arhgap11a ENSDARG00000100019 1642 1.567 - - - - - 0.798 - 0.769 - Rho GTPase activating protein 11A [Source:ZFIN;Acc:ZDB-GENE-040426-2562]
47. dhrs7 ENSDARG00000003444 812 1.566 - - - 0.787 - 0.779 - - - dehydrogenase/reductase (SDR family) member 7 [Source:ZFIN;Acc:ZDB-GENE-060825-21]
48. man1a1 ENSDARG00000005652 877 1.566 - 0.738 - - - 0.828 - - - mannosidase, alpha, class 1A, member 1 [Source:ZFIN;Acc:ZDB-GENE-041014-321]
49. ZCCHC2 ENSDARG00000067950 204 1.565 - - - 0.705 - 0.860 - - - zinc finger, CCHC domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-070912-269]
50. srcap ENSDARG00000005236 1740 1.565 - - - - - 0.799 0.766 - - Snf2-related CREBBP activator protein [Source:ZFIN;Acc:ZDB-GENE-041008-127]
51. lft2 ENSDARG00000044059 46 1.564 - - - - 0.780 - - - 0.784 lefty2 [Source:ZFIN;Acc:ZDB-GENE-990630-11]
52. CDCA4 ENSDARG00000042319 7918 1.563 - - - 0.727 - 0.836 - - - cell division cycle associated 4 [Source:ZFIN;Acc:ZDB-GENE-030131-1695]
53. phf10 ENSDARG00000070084 1210 1.562 - - - 0.715 - 0.847 - - - PHD finger protein 10 [Source:ZFIN;Acc:ZDB-GENE-040426-1573]
54. zbtb2b ENSDARG00000028086, ENSDARG00000110834 1609 1.562 - - - - 0.716 0.846 - - - zinc finger and BTB domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-040426-2753]
55. CABZ01072954.1 CABZ01072954.1 2330 1.561 - - - - - 0.823 0.738 - -
56. ift27 ENSDARG00000099279 393 1.559 - - - - 0.784 - 0.775 - - intraflagellar transport 27 homolog (Chlamydomonas) [Source:ZFIN;Acc:ZDB-GENE-041212-9]
57. gnav1 ENSDARG00000043006 305 1.559 - - - 0.700 - 0.859 - - - guanine nucleotide binding protein (G protein) alpha v1 [Source:ZFIN;Acc:ZDB-GENE-081031-92]
58. dynll2b ENSDARG00000005172 935 1.558 - - - - - 0.808 - - 0.750 dynein, light chain, LC8-type 2b [Source:ZFIN;Acc:ZDB-GENE-050320-132]
59. ildr2 ENSDARG00000014180 791 1.558 - - - - - 0.856 0.702 - - immunoglobulin-like domain containing receptor 2 [Source:ZFIN;Acc:ZDB-GENE-050706-83]
60. trnau1apa ENSDARG00000101323 911 1.557 - - - 0.808 - - 0.749 - - tRNA selenocysteine 1 associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-050522-502]
61. uso1 ENSDARG00000019581 479 1.556 - 0.763 - - - - 0.793 - - USO1 vesicle transport factor [Source:ZFIN;Acc:ZDB-GENE-040426-688]
62. mdkb ENSDARG00000020708 5393 1.552 - - - 0.756 - 0.796 - - - midkine b [Source:ZFIN;Acc:ZDB-GENE-010131-6]
63. TCAIM ENSDARG00000079881 424 1.552 - - - - - 0.845 0.707 - - T cell activation inhibitor, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-160113-67]
64. unc119b ENSDARG00000044362 1528 1.551 - - - 0.701 - 0.850 - - - unc-119 homolog b (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-050201-2]
65. snx29 ENSDARG00000077317 239 1.547 - - - - 0.728 0.819 - - - sorting nexin 29 [Source:ZFIN;Acc:ZDB-GENE-121105-13]
66. CABZ01038514.1 CABZ01038514.1 724 1.543 - - - 0.727 - 0.816 - - -
67. si:dkey-33c12.3 ENSDARG00000057881, ENSDARG00000110707 394 1.543 - - - - - 0.709 0.834 - - si:dkey-33c12.3 [Source:ZFIN;Acc:ZDB-GENE-030131-7320]
68. PAXBP1 ENSDARG00000062361 626 1.54 - 0.753 - - - 0.787 - - - PAX3 and PAX7 binding protein 1 [Source:HGNC Symbol;Acc:HGNC:13579]
69. ubxn2a ENSDARG00000087180 152 1.535 - - - - 0.766 0.769 - - - UBX domain protein 2A [Source:ZFIN;Acc:ZDB-GENE-110411-202]
70. appb ENSDARG00000055543, ENSDARG00000109552 4461 1.534 - - - 0.742 - 0.792 - - - amyloid beta (A4) precursor protein b [Source:ZFIN;Acc:ZDB-GENE-020220-1]
71. wu:fb30e12 wu:fb30e12 1254 1.533 - - - - - 0.764 0.769 - -
72. maf1 ENSDARG00000013122 3365 1.532 - 0.751 - - - - 0.781 - - MAF1 homolog, negative regulator of RNA polymerase III [Source:ZFIN;Acc:ZDB-GENE-040426-2788]
73. CDKN1C CDKN1C 667 1.531 - - - 0.727 - 0.804 - - -
74. med25 ENSDARG00000038005, ENSDARG00000115713 1305 1.53 - - - - - 0.817 0.713 - - mediator complex subunit 25 [Source:ZFIN;Acc:ZDB-GENE-040426-2850]
75. fscn1a ENSDARG00000059680 3999 1.53 - - - - - 0.816 0.714 - - fascin actin-bundling protein 1a [Source:ZFIN;Acc:ZDB-GENE-031009-1]
76. itm2cb ENSDARG00000039650 716 1.528 - - - - - 0.805 - 0.723 - integral membrane protein 2Cb [Source:ZFIN;Acc:ZDB-GENE-030131-7806]
77. rad51ap1 ENSDARG00000045853 811 1.527 - - - - 0.808 - - - 0.719 RAD51 associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-050419-96]
78. st6gal2 st6gal2 1570 1.525 - 0.786 - - - 0.739 - - -
79. chrnb2b ENSDARG00000017790 155 1.524 - - - - - 0.792 0.732 - - cholinergic receptor, nicotinic, beta 2b [Source:ZFIN;Acc:ZDB-GENE-070821-3]
80. TCF24 ENSDARG00000086944 518 1.521 - - - 0.760 - - 0.761 - - transcription factor 24 [Source:HGNC Symbol;Acc:HGNC:32275]
81. rapgef5a ENSDARG00000075271 282 1.521 - - - 0.718 0.803 - - - - Rap guanine nucleotide exchange factor (GEF) 5a [Source:ZFIN;Acc:ZDB-GENE-030131-7681]
82. CDK5RAP1 ENSDARG00000044925, ENSDARG00000110547, ENSDARG00000112362 390 1.519 - - - - - 0.762 0.757 - - CDK5 regulatory subunit associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-070424-90]
83. uvrag ENSDARG00000023815 424 1.517 - - - 0.717 - 0.800 - - - UV radiation resistance associated gene [Source:ZFIN;Acc:ZDB-GENE-040426-924]
84. rnf40 ENSDARG00000054201, ENSDARG00000114667 2440 1.514 - - - 0.792 - 0.722 - - - ring finger protein 40 [Source:ZFIN;Acc:ZDB-GENE-030131-6607]
85. enoph1 ENSDARG00000026198, ENSDARG00000111634, ENSDARG00000114318 1305 1.511 - - - - - 0.773 0.738 - - enolase-phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-040704-73]
86. npm1b ENSDARG00000037675 5448 1.508 - - - - - 0.733 0.775 - - nucleophosmin 1b [Source:ZFIN;Acc:ZDB-GENE-080723-7]
87. deptor ENSDARG00000040930 191 1.505 - - - - 0.742 0.763 - - - DEP domain containing MTOR-interacting protein [Source:ZFIN;Acc:ZDB-GENE-061013-453]
88. si:ch211-152f6.6 si:ch211-152f6.6 278 1.504 - - - - 0.709 - - 0.795 -
89. traip ENSDARG00000011262 410 1.5 - - - - - 0.781 - - 0.719 TRAF-interacting protein [Source:ZFIN;Acc:ZDB-GENE-040801-30]
90. birc5a ENSDARG00000075621 2256 1.494 - - - 0.769 - 0.725 - - - baculoviral IAP repeat containing 5a [Source:ZFIN;Acc:ZDB-GENE-030826-1]
91. nxf1 ENSDARG00000055076 3251 1.494 - - - - - 0.733 0.761 - - nuclear RNA export factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2585]
92. APLF APLF 691 1.493 - - - - - 0.759 - 0.734 -
93. zcrb1 ENSDARG00000045691 1741 1.492 - - - - 0.776 - 0.716 - - zinc finger CCHC-type and RNA binding motif 1 [Source:ZFIN;Acc:ZDB-GENE-041210-114]
94. prkrira 971 1.49 - - - 0.747 - - 0.743 - - protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) a
95. RNASEH2C ENSDARG00000089637 1673 1.489 - - - 0.748 - - 0.741 - - ribonuclease H2, subunit C [Source:ZFIN;Acc:ZDB-GENE-030131-2469]
96. eif4g3b ENSDARG00000074331, ENSDARG00000116386 1155 1.487 - 0.701 - 0.786 - - - - - eukaryotic translation initiation factor 4 gamma, 3b [Source:ZFIN;Acc:ZDB-GENE-090312-49]
97. KDM4C ENSDARG00000061504, ENSDARG00000111347, ENSDARG00000114179 383 1.486 - - - - - 0.764 0.722 - - lysine (K)-specific demethylase 4C [Source:ZFIN;Acc:ZDB-GENE-070209-38]
98. snapc3 ENSDARG00000101474 367 1.48 - - - - 0.742 - 0.738 - - small nuclear RNA activating complex, polypeptide 3 [Source:ZFIN;Acc:ZDB-GENE-040426-971]
99. kifap3a ENSDARG00000008639 721 1.478 - - - 0.748 - - - 0.730 - kinesin-associated protein 3a [Source:ZFIN;Acc:ZDB-GENE-040912-74]
100. xrcc5_1 ENSDARG00000099298 1533 1.476 - 0.710 - - - - 0.766 - - X-ray repair complementing defective repair in Chinese hamster cells 5 [Source:ZFIN;Acc:ZDB-GENE-041008-108]

There are 2120 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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