Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for ube2e3

Gene Name Gene ID Reads Annotation
ube2e3 ENSDARG00000012244 8909 ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-408]










Genes with expression patterns similar to ube2e3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ube2e3 ENSDARG00000012244 8909 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-408]
2. mbd3a ENSDARG00000061774 4047 2.538 - - - - 0.965 0.766 0.807 - - methyl-CpG binding domain protein 3a [Source:ZFIN;Acc:ZDB-GENE-030131-9077]
3. ddx5 ENSDARG00000038068 35302 2.466 - - - 0.737 - 0.853 0.876 - - DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
4. mob4 ENSDARG00000056085 17978 2.439 0.771 0.800 - - 0.868 - - - - MOB family member 4, phocein [Source:ZFIN;Acc:ZDB-GENE-040801-174]
5. setbp1 ENSDARG00000093799 4499 2.269 - - - 0.747 - - 0.802 0.720 - SET binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-060526-72]
6. rnps1 ENSDARG00000116743 9994 2.246 0.733 - 0.733 - - 0.780 - - - RNA binding protein S1, serine-rich domain [Source:NCBI gene;Acc:327020]
7. nono ENSDARG00000020482, ENSDARG00000115783 12482 1.796 - 0.857 - - - - 0.939 - - non-POU domain containing, octamer-binding [Source:ZFIN;Acc:ZDB-GENE-030131-713]
8. nhsl1b ENSDARG00000042627 3697 1.719 - - - - 0.933 - 0.786 - - NHS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040910-1]
9. rbms1a ENSDARG00000074023 2742 1.715 - - - - 0.957 0.758 - - - RNA binding motif, single stranded interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-4967]
10. zgc:77086 ENSDARG00000014015 4908 1.712 - - - - 0.959 - 0.753 - - zgc:77086 [Source:ZFIN;Acc:ZDB-GENE-040426-2238]
11. hmgn3 ENSDARG00000036754, ENSDARG00000116728 11573 1.711 - - - - 0.885 - - 0.826 - high mobility group nucleosomal binding domain 3 [Source:ZFIN;Acc:ZDB-GENE-041114-180]
12. SERP1_1 ENSDARG00000076223 6668 1.702 - 0.770 - - 0.932 - - - - stress associated endoplasmic reticulum protein 1 [Source:HGNC Symbol;Acc:HGNC:10759]
13. pou2f1b ENSDARG00000007996 2172 1.702 - - - - 0.966 0.736 - - - POU class 2 homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2422]
14. safb ENSDARG00000020467 5608 1.689 - 0.727 - - 0.962 - - - - scaffold attachment factor B [Source:ZFIN;Acc:ZDB-GENE-030131-698]
15. aclya ENSDARG00000099079 2324 1.668 - - - - 0.961 0.707 - - - ATP citrate lyase a [Source:ZFIN;Acc:ZDB-GENE-031113-1]
16. arid1aa ENSDARG00000101710 3644 1.665 - - - - 0.867 - 0.798 - - AT rich interactive domain 1Aa (SWI-like) [Source:ZFIN;Acc:ZDB-GENE-080220-35]
17. hat1 ENSDARG00000034916 5712 1.66 - - - - 0.917 0.743 - - - histone acetyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040912-99]
18. srsf2a ENSDARG00000057484 25721 1.642 - - - 0.718 0.924 - - - - serine/arginine-rich splicing factor 2a [Source:ZFIN;Acc:ZDB-GENE-040426-2706]
19. h2afva ENSDARG00000068820 16427 1.618 - - - - 0.825 0.793 - - - H2A histone family, member Va [Source:ZFIN;Acc:ZDB-GENE-020717-1]
20. USMG5 USMG5 10356 1.614 - 0.737 - - 0.877 - - - -
21. plcg1 ENSDARG00000038442 5324 1.605 - 0.759 - - 0.846 - - - - phospholipase C, gamma 1 [Source:ZFIN;Acc:ZDB-GENE-030421-3]
22. zgc:158409 zgc:158409 21963 1.596 - 0.712 - - - - 0.884 - -
23. banf1 ENSDARG00000037009 16466 1.587 - - - - - 0.779 0.808 - - barrier to autointegration factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6657]
24. papola ENSDARG00000009585 9567 1.585 - - 0.774 - - 0.811 - - - poly(A) polymerase alpha [Source:ZFIN;Acc:ZDB-GENE-030131-3507]
25. mcm6 ENSDARG00000057683, ENSDARG00000113317 6591 1.58 - - - 0.711 0.869 - - - - minichromosome maintenance complex component 6 [Source:ZFIN;Acc:ZDB-GENE-030909-6]
26. mmd ENSDARG00000040387 4522 1.58 - - - 0.706 - - 0.874 - - monocyte to macrophage differentiation-associated [Source:ZFIN;Acc:ZDB-GENE-051120-39]
27. hnrpl 6412 1.575 - - - - 0.838 0.737 - - - heterogeneous nuclear ribonucleoprotein L, transcript variant X1
28. api5 ENSDARG00000033597 6655 1.569 - - - - 0.866 0.703 - - - apoptosis inhibitor 5 [Source:ZFIN;Acc:ZDB-GENE-030131-395]
29. eif3ba ENSDARG00000059654 22960 1.559 - - - - - 0.748 0.811 - - eukaryotic translation initiation factor 3, subunit Ba [Source:ZFIN;Acc:ZDB-GENE-030131-2748]
30. ilf2 ENSDARG00000014591 14543 1.558 - - 0.736 - 0.822 - - - - interleukin enhancer binding factor 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2345]
31. abi1a ENSDARG00000010155 5631 1.553 0.737 - - - - - 0.816 - - abl-interactor 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1701]
32. scaf1 ENSDARG00000054010 3752 1.55 - - 0.780 - - 0.770 - - - SR-related CTD-associated factor 1 [Source:ZFIN;Acc:ZDB-GENE-120215-214]
33. srrm1 ENSDARG00000001244 4972 1.546 - - - - 0.792 0.754 - - - serine/arginine repetitive matrix 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2789]
34. si:ch73-46j18.5 ENSDARG00000092467 6002 1.545 - - 0.710 - 0.835 - - - - si:ch73-46j18.5 [Source:ZFIN;Acc:ZDB-GENE-030131-7892]
35. prdx2 ENSDARG00000025350 11194 1.539 - - - - 0.825 - 0.714 - - peroxiredoxin 2 [Source:ZFIN;Acc:ZDB-GENE-030326-2]
36. metrn ENSDARG00000030367, ENSDARG00000112407, ENSDARG00000115842 7032 1.537 - - - 0.725 0.812 - - - - meteorin, glial cell differentiation regulator [Source:ZFIN;Acc:ZDB-GENE-050102-1]
37. kif11 ENSDARG00000010948 4973 1.534 - - - - - 0.737 0.797 - - kinesin family member 11 [Source:ZFIN;Acc:ZDB-GENE-020426-1]
38. cdca7a ENSDARG00000077620 9345 1.524 - - - 0.732 - - 0.792 - - cell division cycle associated 7a [Source:ZFIN;Acc:ZDB-GENE-050417-29]
39. puf60b ENSDARG00000001241 13827 1.521 - - - 0.803 0.718 - - - - poly-U binding splicing factor b [Source:ZFIN;Acc:ZDB-GENE-040625-116]
40. CWC15 ENSDARG00000013382 8969 1.521 - - - - - 0.725 0.796 - - CWC15 spliceosome-associated protein homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040625-10]
41. EIF4G1 EIF4G1 19676 1.518 - - - - 0.807 - 0.711 - -
42. rbb4 rbb4 15541 1.513 - - 0.723 - - 0.790 - - -
43. cnot3a ENSDARG00000007135 3084 1.493 - - - - - 0.703 0.790 - - CCR4-NOT transcription complex, subunit 3a [Source:ZFIN;Acc:ZDB-GENE-040927-6]
44. psmc3 ENSDARG00000007141 5592 1.488 - 0.770 - - - 0.718 - - - proteasome 26S subunit, ATPase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-666]
45. stk35l ENSDARG00000057497 3582 1.485 - 0.754 - - - 0.731 - - - serine/threonine kinase 35, like [Source:ZFIN;Acc:ZDB-GENE-041212-52]
46. oxsr1a ENSDARG00000034189 4314 1.479 0.746 0.733 - - - - - - - oxidative stress responsive 1a [Source:ZFIN;Acc:ZDB-GENE-070620-25]
47. u2af2b ENSDARG00000011740 6946 1.471 - - 0.756 - - 0.715 - - - U2 small nuclear RNA auxiliary factor 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1881]
48. nucks1a ENSDARG00000078473 28285 1.469 - - 0.762 - - 0.707 - - - nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
49. smyd1b ENSDARG00000091253 4964 1.466 - 0.711 - - - - 0.755 - - SET and MYND domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-060522-1]
50. tet2 ENSDARG00000076928 2190 1.45 - - 0.708 - - - - 0.742 - tet methylcytosine dioxygenase 2 [Source:ZFIN;Acc:ZDB-GENE-090312-98]
51. ZNF609 ZNF609 2176 1.446 - - 0.702 - - 0.744 - - -
52. ENDOD1_5 ENDOD1_5 8723 1.441 - - 0.722 - - 0.719 - - -
53. snapin ENSDARG00000062382 1531 1.421 - - - - - 0.705 - - 0.716 SNAP-associated protein [Source:ZFIN;Acc:ZDB-GENE-060503-343]
54. MKI67 ENSDARG00000091150 11038 1.417 - - - 0.713 - 0.704 - - - marker of proliferation Ki-67 [Source:ZFIN;Acc:ZDB-GENE-030131-9771]
55. hnrnpm ENSDARG00000061735 19428 1.416 - 0.704 - 0.712 - - - - - heterogeneous nuclear ribonucleoprotein M [Source:ZFIN;Acc:ZDB-GENE-030131-6898]
56. si:dkey-67c22.2 ENSDARG00000055389 6410 1.415 - - - 0.708 - - - - 0.707 si:dkey-67c22.2 [Source:ZFIN;Acc:ZDB-GENE-030131-5845]
57. snrnp27 ENSDARG00000035625 9080 1.412 - - - - - 0.700 - - 0.712 small nuclear ribonucleoprotein 27 (U4/U6.U5) [Source:ZFIN;Acc:ZDB-GENE-040718-457]
58. meaf6 ENSDARG00000101216 6865 1.407 - - 0.702 - - - - - 0.705 MYST/Esa1-associated factor 6 [Source:ZFIN;Acc:ZDB-GENE-040808-12]
59. mat2b ENSDARG00000012932 3146 0.972 - - - - 0.972 - - - - methionine adenosyltransferase II, beta [Source:ZFIN;Acc:ZDB-GENE-030131-786]
60. tubg1 ENSDARG00000015610 2433 0.971 - - - - 0.971 - - - - tubulin, gamma 1 [Source:ZFIN;Acc:ZDB-GENE-040426-836]
61. nkx6.1 ENSDARG00000022569 3779 0.97 - - - - 0.970 - - - - NK6 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040718-178]
62. MAPRE2 ENSDARG00000099943 3041 0.97 - - - - 0.970 - - - - microtubule-associated protein, RP/EB family, member 2 [Source:ZFIN;Acc:ZDB-GENE-071004-41]
63. pdcd11 ENSDARG00000052480 2791 0.97 - - - - 0.970 - - - - programmed cell death 11 [Source:ZFIN;Acc:ZDB-GENE-030131-4076]
64. chd4a ENSDARG00000063535, ENSDARG00000111791 4059 0.969 - - - - 0.969 - - - - chromodomain helicase DNA binding protein 4a [Source:ZFIN;Acc:ZDB-GENE-041111-187]
65. chrac1 ENSDARG00000042337 2590 0.968 - - - - 0.968 - - - - chromatin accessibility complex 1 [Source:ZFIN;Acc:ZDB-GENE-050227-18]
66. scaf11 ENSDARG00000045885 3531 0.968 - - - - 0.968 - - - - SR-related CTD-associated factor 11 [Source:ZFIN;Acc:ZDB-GENE-041210-22]
67. e2f7 ENSDARG00000008986 1439 0.968 - - - - 0.968 - - - - E2F transcription factor 7 [Source:ZFIN;Acc:ZDB-GENE-030131-3527]
68. eif4a3 ENSDARG00000102978 16162 0.967 - - - - - - 0.967 - - eukaryotic translation initiation factor 4A3 [Source:ZFIN;Acc:ZDB-GENE-040426-915]
69. ppm1la ENSDARG00000063218 2142 0.967 - - - - 0.967 - - - - protein phosphatase, Mg2+/Mn2+ dependent, 1La [Source:ZFIN;Acc:ZDB-GENE-061103-118]
70. cdk6 ENSDARG00000070228 1778 0.967 - - - - 0.967 - - - - cyclin-dependent kinase 6 [Source:ZFIN;Acc:ZDB-GENE-060503-786]
71. RNF38 ENSDARG00000062055 3901 0.967 - - - - 0.967 - - - - ring finger protein 38 [Source:ZFIN;Acc:ZDB-GENE-030131-8693]
72. pold1 ENSDARG00000027689 1148 0.966 - - - - 0.966 - - - - polymerase (DNA directed), delta 1, catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-060429-1]
73. luc7l3 ENSDARG00000014366 4416 0.966 - - - - 0.966 - - - - LUC7-like 3 pre-mRNA splicing factor [Source:ZFIN;Acc:ZDB-GENE-060616-375]
74. bysl ENSDARG00000001057 2621 0.966 - - - - 0.966 - - - - bystin-like [Source:ZFIN;Acc:ZDB-GENE-040426-1287]
75. rbm28 ENSDARG00000025332 2685 0.966 - - - - 0.966 - - - - RNA binding motif protein 28 [Source:ZFIN;Acc:ZDB-GENE-040426-960]
76. hsf2 ENSDARG00000053097 1188 0.965 - - - - 0.965 - - - - heat shock transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-011128-1]
77. ftsjd2 ftsjd2 2694 0.965 - - - - 0.965 - - - -
78. kidins220b ENSDARG00000017338 1937 0.965 - - - - 0.965 - - - - kinase D-interacting substrate 220b [Source:ZFIN;Acc:ZDB-GENE-030131-7824]
79. pdcd6ip ENSDARG00000025269 2522 0.965 - - - - 0.965 - - - - programmed cell death 6 interacting protein [Source:ZFIN;Acc:ZDB-GENE-040426-2678]
80. pik3r1 ENSDARG00000038524 3615 0.964 - - - - 0.964 - - - - phosphoinositide-3-kinase, regulatory subunit 1 (alpha) [Source:ZFIN;Acc:ZDB-GENE-030131-1280]
81. tax1bp3 ENSDARG00000059177 4324 0.964 - - - - 0.964 - - - - Tax1 (human T-cell leukemia virus type I) binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2830]
82. sdad1 ENSDARG00000105117 2819 0.964 - - - - 0.964 - - - - SDA1 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-021213-1]
83. MRPL51 ENSDARG00000041340, ENSDARG00000113440 1544 0.964 - - - - 0.964 - - - - mitochondrial ribosomal protein L51 [Source:ZFIN;Acc:ZDB-GENE-050320-40]
84. mpp6b ENSDARG00000029761 2142 0.964 - - - - 0.964 - - - - membrane protein, palmitoylated 6b (MAGUK p55 subfamily member 6) [Source:ZFIN;Acc:ZDB-GENE-040426-775]
85. chd2 ENSDARG00000060687 3832 0.963 - - - - 0.963 - - - - chromodomain helicase DNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-050419-256]
86. sptlc2a ENSDARG00000018976 937 0.963 - - - - 0.963 - - - - serine palmitoyltransferase, long chain base subunit 2a [Source:ZFIN;Acc:ZDB-GENE-050522-23]
87. zfand1 ENSDARG00000009178, ENSDARG00000114617 1192 0.963 - - - - 0.963 - - - - zinc finger, AN1-type domain 1 [Source:ZFIN;Acc:ZDB-GENE-040801-269]
88. parp12b ENSDARG00000057974, ENSDARG00000115844 1435 0.963 - - - - 0.963 - - - - poly (ADP-ribose) polymerase family, member 12b [Source:ZFIN;Acc:ZDB-GENE-030131-2617]
89. spryd4 ENSDARG00000023309, ENSDARG00000114062 2091 0.963 - - - - 0.963 - - - - SPRY domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-040718-180]
90. scocb ENSDARG00000002217 1844 0.963 - - - - 0.963 - - - - short coiled-coil protein b [Source:ZFIN;Acc:ZDB-GENE-041010-41]
91. tbc1d23 ENSDARG00000044357, ENSDARG00000109696 6272 0.963 - - - - 0.963 - - - - TBC1 domain family, member 23 [Source:ZFIN;Acc:ZDB-GENE-040426-1253]
92. C7H4orf48 C7H4orf48 1455 0.963 - - - - 0.963 - - - -
93. acvr1b acvr1b 2963 0.963 - - - - 0.963 - - - -
94. lppr3a lppr3a 1294 0.963 - - - - 0.963 - - - -
95. CCDC106 CCDC106 1908 0.963 - - - - 0.963 - - - -
96. slc35d2 ENSDARG00000089837 1606 0.962 - - - - 0.962 - - - - solute carrier family 35 (UDP-GlcNAc/UDP-glucose transporter), member D2 [Source:ZFIN;Acc:ZDB-GENE-080125-1]
97. rc3h1 rc3h1 1087 0.962 - - - - 0.962 - - - -
98. zgc:66443 ENSDARG00000057707 624 0.962 - - - - 0.962 - - - - zgc:66443 [Source:ZFIN;Acc:ZDB-GENE-040426-2945]
99. cdc26 ENSDARG00000077815, ENSDARG00000115575 1460 0.962 - - - - 0.962 - - - - cell division cycle 26 homolog [Source:ZFIN;Acc:ZDB-GENE-040822-18]
100. cicb ENSDARG00000055502 1356 0.962 - - - - 0.962 - - - - capicua transcriptional repressor b [Source:ZFIN;Acc:ZDB-GENE-030131-1966]

There are 723 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA