Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for u2af1

Gene Name Gene ID Reads Annotation
u2af1 ENSDARG00000015325 3217 U2 small nuclear RNA auxiliary factor 1 [Source:ZFIN;Acc:ZDB-GENE-020419-1]










Genes with expression patterns similar to u2af1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. u2af1 ENSDARG00000015325 3217 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 U2 small nuclear RNA auxiliary factor 1 [Source:ZFIN;Acc:ZDB-GENE-020419-1]
2. sumo3a ENSDARG00000028119 13447 3.116 0.737 - - 0.815 - - 0.728 - 0.836 small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
3. rtf1 ENSDARG00000008947 6596 3.07 0.748 - - - 0.789 0.757 - - 0.776 RTF1 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-030131-6778]
4. TAF15 ENSDARG00000070019 5102 3.062 0.747 - - 0.710 - - - 0.763 0.842 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-061215-102]
5. polr2d ENSDARG00000076509 3386 2.988 - - - 0.774 - - 0.743 0.745 0.726 polymerase (RNA) II (DNA directed) polypeptide D [Source:ZFIN;Acc:ZDB-GENE-040714-2]
6. cdk6 ENSDARG00000070228 1778 2.958 - 0.734 - 0.736 - - 0.719 - 0.769 cyclin-dependent kinase 6 [Source:ZFIN;Acc:ZDB-GENE-060503-786]
7. hnrnpub ENSDARG00000004735 16496 2.462 0.765 - - - 0.828 - - - 0.869 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
8. prmt1 ENSDARG00000010246 11311 2.382 0.830 0.753 - - - 0.799 - - - protein arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-693]
9. smc1al ENSDARG00000058203 8838 2.33 0.744 - - - - 0.763 - - 0.823 structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]
10. snrpc ENSDARG00000009871 9567 2.329 0.715 - - - - - - 0.745 0.869 small nuclear ribonucleoprotein polypeptide C [Source:ZFIN;Acc:ZDB-GENE-020419-26]
11. ezh2 ENSDARG00000010571 3273 2.316 - 0.731 - 0.756 - - - - 0.829 enhancer of zeste 2 polycomb repressive complex 2 subunit [Source:ZFIN;Acc:ZDB-GENE-041111-259]
12. rbm25 rbm25 3629 2.314 - - - - - 0.766 - 0.739 0.809
13. drap1 ENSDARG00000041203 6749 2.297 0.740 0.822 - - - - - 0.735 - DR1-associated protein 1 (negative cofactor 2 alpha) [Source:ZFIN;Acc:ZDB-GENE-030131-400]
14. stmn1a ENSDARG00000004169 21169 2.296 0.704 - - - - - 0.818 - 0.774 stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
15. snrpd1 ENSDARG00000011648 8615 2.292 - - - - 0.785 0.765 - 0.742 - small nuclear ribonucleoprotein D1 polypeptide [Source:ZFIN;Acc:ZDB-GENE-020419-14]
16. bud31 ENSDARG00000017084 3892 2.29 - - - - - 0.739 0.752 - 0.799 BUD31 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040720-3]
17. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 2.283 0.767 - - - - - - 0.706 0.810 leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
18. eftud2 ENSDARG00000012261 3081 2.273 - 0.803 - - 0.708 - - - 0.762 elongation factor Tu GTP binding domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1569]
19. khsrp ENSDARG00000026489 15738 2.269 0.789 - - - - - 0.738 - 0.742 KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
20. ppp6r3 ENSDARG00000013379 2912 2.269 - 0.750 - - - - 0.780 - 0.739 protein phosphatase 6, regulatory subunit 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3251]
21. slbp ENSDARG00000100558 3405 2.267 0.707 - - 0.768 0.792 - - - - stem-loop binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-9686]
22. ube2g1a ENSDARG00000015292, ENSDARG00000112281 3207 2.261 - 0.704 - - - - - 0.752 0.805 ubiquitin-conjugating enzyme E2G 1a (UBC7 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-6065]
23. npm1b ENSDARG00000037675 5448 2.253 0.771 - - 0.711 - - 0.771 - - nucleophosmin 1b [Source:ZFIN;Acc:ZDB-GENE-080723-7]
24. ndufa6 ENSDARG00000038028 2653 2.251 0.768 0.752 - - - 0.731 - - - NADH:ubiquinone oxidoreductase subunit A6 [Source:ZFIN;Acc:ZDB-GENE-040426-1124]
25. kansl2 ENSDARG00000056318, ENSDARG00000113311 4702 2.244 - - - - - 0.777 0.734 - 0.733 KAT8 regulatory NSL complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-041010-67]
26. znf827 ENSDARG00000076171 6304 2.227 0.713 - - - - 0.774 - - 0.740 zinc finger protein 827 [Source:ZFIN;Acc:ZDB-GENE-080728-3]
27. bcas2 ENSDARG00000043631 1971 2.215 - 0.748 - - - - 0.756 - 0.711 BCAS2, pre-mRNA processing factor [Source:ZFIN;Acc:ZDB-GENE-030408-5]
28. chaf1a ENSDARG00000062152, ENSDARG00000114749 5342 2.213 - - - - 0.740 - - 0.716 0.757 chromatin assembly factor 1, subunit A (p150) [Source:ZFIN;Acc:ZDB-GENE-030131-5366]
29. sh2b1 ENSDARG00000057679, ENSDARG00000113263 2194 2.211 - 0.724 - - - 0.748 - - 0.739 SH2B adaptor protein 1 [Source:ZFIN;Acc:ZDB-GENE-070209-188]
30. msl2a ENSDARG00000038909 1357 2.192 - - - - - 0.721 - 0.726 0.745 male-specific lethal 2 homolog a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-070912-449]
31. tmsb ENSDARG00000054911 6411 2.185 0.729 0.726 - - - - - - 0.730 thymosin, beta [Source:ZFIN;Acc:ZDB-GENE-050307-5]
32. ier5l ENSDARG00000054906, ENSDARG00000110793, ENSDARG00000114072 4216 2.178 - - - - 0.708 0.750 - - 0.720 immediate early response 5-like [Source:ZFIN;Acc:ZDB-GENE-030131-5134]
33. pak2b ENSDARG00000018476 4331 2.174 - 0.739 - - 0.720 - - - 0.715 p21 protein (Cdc42/Rac)-activated kinase 2b [Source:ZFIN;Acc:ZDB-GENE-030131-3759]
34. zc3h13 ENSDARG00000037177, ENSDARG00000113331 2662 2.148 0.711 - - - - 0.716 - 0.721 - zinc finger CCCH-type containing 13 [Source:ZFIN;Acc:ZDB-GENE-040426-1619]
35. sfpq ENSDARG00000011564, ENSDARG00000115611 15626 1.641 - - - 0.777 - - - - 0.864 splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
36. cdh2 ENSDARG00000018693, ENSDARG00000117201 9869 1.619 0.800 - - - - - - - 0.819 cadherin 2, type 1, N-cadherin (neuronal) [Source:ZFIN;Acc:ZDB-GENE-990415-171]
37. srsf7a ENSDARG00000035325, ENSDARG00000110705 11788 1.615 - - - - - - - 0.799 0.816 serine/arginine-rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798]
38. parp1 ENSDARG00000019529 6787 1.614 0.767 - - - - - - - 0.847 poly (ADP-ribose) polymerase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3955]
39. ncl ENSDARG00000002710 16951 1.613 - 0.826 - - - - - - 0.787 nucleolin [Source:ZFIN;Acc:ZDB-GENE-030131-6986]
40. hmgb2b ENSDARG00000053990 11519 1.609 0.764 - - - - - - - 0.845 high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]
41. ube2nb ENSDARG00000045877 4583 1.606 - 0.802 - - 0.804 - - - - ubiquitin-conjugating enzyme E2Nb [Source:ZFIN;Acc:ZDB-GENE-040426-1291]
42. dek ENSDARG00000070108 2262 1.604 - - - 0.767 0.837 - - - - DEK proto-oncogene [Source:ZFIN;Acc:ZDB-GENE-060512-191]
43. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 8110 1.604 0.789 - - - 0.815 - - - - ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
44. cdc6 ENSDARG00000009942, ENSDARG00000109602 2540 1.604 0.768 - - - 0.836 - - - - cell division cycle 6 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050506-131]
45. puf60a ENSDARG00000032175 5618 1.598 - - - - 0.786 - - - 0.812 poly-U binding splicing factor a [Source:ZFIN;Acc:ZDB-GENE-030131-2891]
46. ilf2 ENSDARG00000014591 14543 1.598 0.770 - - - - - - - 0.828 interleukin enhancer binding factor 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2345]
47. tmpob ENSDARG00000022978 8121 1.597 0.813 - - - - - - - 0.784 thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
48. SNRPG ENSDARG00000099667 18697 1.592 - 0.739 - - - - - - 0.853 small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105]
49. RLTPR 1158 1.589 - - - - - - - 0.825 0.764 RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing, transcript variant X1
50. nup205 ENSDARG00000042530, ENSDARG00000114489 2255 1.589 - - - - - 0.806 - - 0.783 nucleoporin 205 [Source:ZFIN;Acc:ZDB-GENE-040715-8]
51. creb1a ENSDARG00000053586 5068 1.586 - - - - - 0.746 - - 0.840 cAMP responsive element binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-040426-750]
52. eif4bb ENSDARG00000010194, ENSDARG00000112432 12555 1.584 - 0.735 - - - - 0.849 - - eukaryotic translation initiation factor 4Bb [Source:ZFIN;Acc:ZDB-GENE-030131-8563]
53. hnrnpul1 ENSDARG00000040564 6550 1.582 0.738 - - - - - - - 0.844 heterogeneous nuclear ribonucleoprotein U-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2432]
54. nup93 ENSDARG00000003487, ENSDARG00000111433 2474 1.581 - - - - 0.767 - - - 0.814 nucleoporin 93 [Source:ZFIN;Acc:ZDB-GENE-990415-46]
55. eif2s1a ENSDARG00000005827 5992 1.579 - 0.830 - - - - - - 0.749 eukaryotic translation initiation factor 2, subunit 1 alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-526]
56. hmgb1a ENSDARG00000099175, ENSDARG00000114353 17231 1.578 - - - - - - - 0.736 0.842 high mobility group box 1a [Source:ZFIN;Acc:ZDB-GENE-030131-341]
57. acap3a ENSDARG00000075990 9652 1.574 0.820 - - - - 0.754 - - - ArfGAP with coiled-coil, ankyrin repeat and PH domains 3a [Source:ZFIN;Acc:ZDB-GENE-030131-1711]
58. hdac1 ENSDARG00000015427 19804 1.57 0.738 - - - - - - - 0.832 histone deacetylase 1 [Source:ZFIN;Acc:ZDB-GENE-020419-32]
59. ccnb3 ENSDARG00000034855, ENSDARG00000110875 2123 1.57 - - - - - - 0.851 - 0.719 cyclin B3 [Source:ZFIN;Acc:ZDB-GENE-060929-684]
60. pomp ENSDARG00000032296 4439 1.568 - 0.862 - - 0.706 - - - - proteasome maturation protein [Source:ZFIN;Acc:ZDB-GENE-040801-10]
61. max ENSDARG00000024844 6035 1.565 - - - - 0.775 - - - 0.790 myc associated factor X [Source:ZFIN;Acc:ZDB-GENE-990415-152]
62. acvr1b acvr1b 2963 1.565 - - - - - - 0.746 - 0.819
63. her2 ENSDARG00000038205 3219 1.564 0.732 - - - 0.832 - - - - hairy-related 2 [Source:ZFIN;Acc:ZDB-GENE-980526-274]
64. mcm2 ENSDARG00000102798 8148 1.563 - - - - - - 0.739 - 0.824 minichromosome maintenance complex component 2 [Source:ZFIN;Acc:ZDB-GENE-020419-24]
65. wu:fk48d07 wu:fk48d07 13245 1.562 0.744 - - - - - - - 0.818
66. usp7 ENSDARG00000073710 7017 1.56 - - - - - - 0.771 - 0.789 ubiquitin specific peptidase 7 (herpes virus-associated) [Source:ZFIN;Acc:ZDB-GENE-030131-3656]
67. pes ENSDARG00000018902 3286 1.559 0.733 0.826 - - - - - - - pescadillo [Source:ZFIN;Acc:ZDB-GENE-990415-206]
68. ppp1caa ENSDARG00000003486, ENSDARG00000115977 5931 1.558 - - - - 0.756 - 0.802 - - protein phosphatase 1, catalytic subunit, alpha isozyme a [Source:ZFIN;Acc:ZDB-GENE-040516-3]
69. rnaseh2a ENSDARG00000018891 1979 1.558 - - - - 0.775 - - 0.783 - ribonuclease H2, subunit A [Source:ZFIN;Acc:ZDB-GENE-040426-976]
70. psmc1a ENSDARG00000030537 2799 1.556 - 0.831 - - - - - - 0.725 proteasome 26S subunit, ATPase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-8730]
71. lfng ENSDARG00000037879 11783 1.556 0.788 - - - - - - - 0.768 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:ZFIN;Acc:ZDB-GENE-980605-16]
72. tia1 ENSDARG00000052536, ENSDARG00000114478 4392 1.555 - - - - - - - 0.760 0.795 TIA1 cytotoxic granule-associated RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-1506]
73. adnpa ENSDARG00000062002, ENSDARG00000115617 2009 1.555 - - - - - - - 0.781 0.774 activity-dependent neuroprotector homeobox a [Source:ZFIN;Acc:ZDB-GENE-061215-112]
74. psmc4 ENSDARG00000027099, ENSDARG00000109415 6643 1.555 0.728 - - - - 0.827 - - - proteasome 26S subunit, ATPase 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5083]
75. ptenb ENSDARG00000056623 5783 1.55 - - - - - 0.778 0.772 - - phosphatase and tensin homolog B [Source:ZFIN;Acc:ZDB-GENE-030616-47]
76. irx1a ENSDARG00000101831 644 1.55 - - - - - - - 0.842 0.708 iroquois homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-040707-1]
77. hmgb3a ENSDARG00000056725 15668 1.549 0.785 - - - - - - - 0.764 high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
78. snrpe ENSDARG00000033175 7462 1.548 - 0.848 - - - - 0.700 - - small nuclear ribonucleoprotein polypeptide E [Source:ZFIN;Acc:ZDB-GENE-040426-1112]
79. abcf2a ENSDARG00000038785 2065 1.548 - 0.813 - - 0.735 - - - - ATP-binding cassette, sub-family F (GCN20), member 2a [Source:ZFIN;Acc:ZDB-GENE-030131-8714]
80. celf3a ENSDARG00000034668 2432 1.547 - - - - 0.767 - - - 0.780 cugbp, Elav-like family member 3a [Source:ZFIN;Acc:ZDB-GENE-000501-2]
81. xpo1b ENSDARG00000063229 2529 1.547 - - - - 0.756 0.791 - - - exportin 1 (CRM1 homolog, yeast) b [Source:ZFIN;Acc:ZDB-GENE-070530-6]
82. rbmx ENSDARG00000014244 3445 1.546 - 0.739 - - - - - - 0.807 RNA binding motif protein X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-579]
83. si:ch211-198j3.1 si:ch211-198j3.1 5487 1.546 - - - - - 0.830 - - 0.716
84. caprin1b ENSDARG00000054272 7033 1.546 - - - - - 0.825 - 0.721 - cell cycle associated protein 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2020]
85. rbm14a ENSDARG00000012723, ENSDARG00000114603 3802 1.545 - - - - - - 0.730 - 0.815 RNA binding motif protein 14a [Source:ZFIN;Acc:ZDB-GENE-050522-496]
86. txlnbb ENSDARG00000076241 6396 1.538 0.722 0.816 - - - - - - - taxilin beta b [Source:ZFIN;Acc:ZDB-GENE-070424-77]
87. dla ENSDARG00000010791 9281 1.537 0.751 - - - - - - - 0.786 deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
88. vdac1 ENSDARG00000045132 8051 1.535 0.805 - - - 0.730 - - - - voltage-dependent anion channel 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6514]
89. sema3aa ENSDARG00000019235, ENSDARG00000116240 1745 1.534 - 0.810 - - - 0.724 - - - sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa [Source:ZFIN;Acc:ZDB-GENE-991209-3]
90. eif2s3 ENSDARG00000008292 17051 1.533 0.717 0.816 - - - - - - - eukaryotic translation initiation factor 2, subunit 3 gamma [Source:ZFIN;Acc:ZDB-GENE-030131-5552]
91. cul4b ENSDARG00000060510 6053 1.533 - - - - 0.818 - 0.715 - - cullin 4B [Source:ZFIN;Acc:ZDB-GENE-041008-208]
92. actl6a ENSDARG00000070828, ENSDARG00000115348 1961 1.533 - - - - 0.766 - - - 0.767 actin-like 6A [Source:ZFIN;Acc:ZDB-GENE-020419-36]
93. smc2 ENSDARG00000017744, ENSDARG00000114076 2271 1.532 - - - - 0.788 - - - 0.744 structural maintenance of chromosomes 2 [Source:ZFIN;Acc:ZDB-GENE-030131-105]
94. adssl ENSDARG00000012399 2271 1.531 - - - - 0.772 - - - 0.759 adenylosuccinate synthase, like [Source:ZFIN;Acc:ZDB-GENE-020419-28]
95. bag6 ENSDARG00000075892 3782 1.531 - - - - 0.759 0.772 - - - BCL2 associated athanogene 6 [Source:ZFIN;Acc:ZDB-GENE-010501-5]
96. marcksa ENSDARG00000004049 2518 1.531 - - - - - - - 0.712 0.819 myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
97. CR936437.1 CR936437.1 6465 1.528 - - - - 0.755 - - - 0.773
98. mcm5 ENSDARG00000019507 6407 1.528 - - - 0.745 - - - - 0.783 minichromosome maintenance complex component 5 [Source:ZFIN;Acc:ZDB-GENE-021209-1]
99. si:dkeyp-44a8.2 ENSDARG00000092493 8308 1.528 - - - - 0.759 - - - 0.769 si:dkeyp-44a8.2 [Source:ZFIN;Acc:ZDB-GENE-070705-542]
100. nr2f1a ENSDARG00000052695 5037 1.527 - - - - - - - 0.724 0.803 nuclear receptor subfamily 2, group F, member 1a [Source:ZFIN;Acc:ZDB-GENE-980526-115]

There are 1563 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA