Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for trub2

Gene Name Gene ID Reads Annotation
trub2 ENSDARG00000028379 783 TruB pseudouridine (psi) synthase family member 2 [Source:ZFIN;Acc:ZDB-GENE-040704-41]










Genes with expression patterns similar to trub2

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. trub2 ENSDARG00000028379 783 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 TruB pseudouridine (psi) synthase family member 2 [Source:ZFIN;Acc:ZDB-GENE-040704-41]
2. trappc2 ENSDARG00000097660 760 2.608 - - 0.932 0.921 - 0.755 - - - trafficking protein particle complex 2 [Source:ZFIN;Acc:ZDB-GENE-060929-1266]
3. suv39h1b ENSDARG00000055753 1540 2.543 - - 0.940 0.856 - - 0.747 - - suppressor of variegation 3-9 homolog 1b [Source:ZFIN;Acc:ZDB-GENE-030131-5105]
4. axin1 ENSDARG00000102964 1710 2.413 - - 0.920 0.701 - - 0.792 - - axin 1 [Source:ZFIN;Acc:ZDB-GENE-000403-1]
5. mns1 ENSDARG00000060169, ENSDARG00000110835 283 1.909 - - 0.967 0.942 - - - - - meiosis-specific nuclear structural 1 [Source:ZFIN;Acc:ZDB-GENE-030521-42]
6. ATF6B 960 1.849 - - 0.984 - - - 0.865 - - activating transcription factor 6 beta
7. cc2d2a ENSDARG00000090971 363 1.827 - - 0.960 - - 0.867 - - - coiled-coil and C2 domain containing 2A [Source:ZFIN;Acc:ZDB-GENE-030131-2291]
8. CCDC167 ENSDARG00000045850 1024 1.793 - - 0.946 - - 0.847 - - - coiled-coil domain containing 167 [Source:ZFIN;Acc:ZDB-GENE-041210-79]
9. lrrfip2 ENSDARG00000010400 2633 1.788 - - 0.884 0.904 - - - - - leucine rich repeat (in FLII) interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7781]
10. nfkb2 ENSDARG00000038687, ENSDARG00000112821 468 1.759 - - 0.971 0.788 - - - - - nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) [Source:ZFIN;Acc:ZDB-GENE-030131-6701]
11. nabp1a ENSDARG00000004692, ENSDARG00000115485 1843 1.751 - - 0.781 0.970 - - - - - nucleic acid binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-041212-71]
12. VPS37B_1 VPS37B_1 1816 1.748 - - 0.941 0.807 - - - - -
13. ppig ENSDARG00000044431 3427 1.744 - - - 0.926 - - 0.818 - - peptidylprolyl isomerase G (cyclophilin G) [Source:ZFIN;Acc:ZDB-GENE-040426-2822]
14. trappc6bl ENSDARG00000033171, ENSDARG00000111544 911 1.741 - - 0.925 0.816 - - - - - trafficking protein particle complex 6b-like [Source:ZFIN;Acc:ZDB-GENE-040426-1602]
15. dnajc5ab ENSDARG00000004836 2923 1.74 - - - 0.930 - - 0.810 - - DnaJ (Hsp40) homolog, subfamily C, member 5ab [Source:ZFIN;Acc:ZDB-GENE-081021-2]
16. ADCY3 ADCY3 537 1.711 - 0.761 - 0.950 - - - - -
17. golph3 ENSDARG00000052851, ENSDARG00000109334 2114 1.705 - - 0.969 - - - 0.736 - - golgi phosphoprotein 3 [Source:ZFIN;Acc:ZDB-GENE-041010-209]
18. znhit2 ENSDARG00000030805 197 1.688 - 0.733 - 0.955 - - - - - zinc finger, HIT-type containing 2 [Source:ZFIN;Acc:ZDB-GENE-061103-46]
19. tmub1 ENSDARG00000038787 1012 1.684 - - 0.937 - - - 0.747 - - transmembrane and ubiquitin-like domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2504]
20. aanat2 ENSDARG00000079802 175 1.682 - - - 0.956 - 0.726 - - - arylalkylamine N-acetyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-991019-6]
21. etv4 ENSDARG00000018303, ENSDARG00000115855 3889 1.669 - - 0.925 - - - 0.744 - - ets variant 4 [Source:ZFIN;Acc:ZDB-GENE-990415-71]
22. CCNJL ENSDARG00000077116 1197 1.66 - - 0.907 - - - - 0.753 - cyclin J-like [Source:ZFIN;Acc:ZDB-GENE-030131-9888]
23. TRIP10 TRIP10 1079 1.654 - - 0.951 0.703 - - - - -
24. mst4 mst4 1672 1.651 - - 0.905 0.746 - - - - -
25. u2af2a ENSDARG00000012505 2920 1.649 - - - 0.811 - - 0.838 - - U2 small nuclear RNA auxiliary factor 2a [Source:ZFIN;Acc:ZDB-GENE-050706-131]
26. MRPL52 ENSDARG00000090568 4402 1.648 - - 0.792 0.856 - - - - - mitochondrial ribosomal protein L52 [Source:ZFIN;Acc:ZDB-GENE-110325-1]
27. strada ENSDARG00000037929 1614 1.639 - - 0.837 - - - 0.802 - - ste20-related kinase adaptor alpha [Source:ZFIN;Acc:ZDB-GENE-030131-6482]
28. zgc:171497 ENSDARG00000100614 1040 1.636 - - 0.910 0.726 - - - - - zgc:171497 [Source:ZFIN;Acc:ZDB-GENE-080220-58]
29. hells ENSDARG00000057738, ENSDARG00000112932, ENSDARG00000116012 1443 1.632 - - 0.804 - - - 0.828 - - helicase, lymphoid specific [Source:ZFIN;Acc:ZDB-GENE-030131-9923]
30. NIPBL NIPBL 871 1.62 - - - 0.838 - - 0.782 - -
31. IWS1 2428 1.608 - - 0.908 - - - 0.700 - - IWS1, SUPT6H interacting protein, transcript variant X2
32. ttc1 ENSDARG00000044567 1141 1.597 - - - 0.861 - - - 0.736 - tetratricopeptide repeat domain 1 [Source:ZFIN;Acc:ZDB-GENE-041114-80]
33. gatad2ab ENSDARG00000006192 2461 1.595 - 0.740 - 0.855 - - - - - GATA zinc finger domain containing 2Ab [Source:ZFIN;Acc:ZDB-GENE-040426-2372]
34. gpatch11 ENSDARG00000026892 1360 1.592 - - 0.883 - - - 0.709 - - G patch domain containing 11 [Source:ZFIN;Acc:ZDB-GENE-040718-89]
35. IPO11 ENSDARG00000054224 616 1.575 - - - 0.816 - - 0.759 - - importin 11 [Source:ZFIN;Acc:ZDB-GENE-040711-1]
36. pou3f2b ENSDARG00000076262, ENSDARG00000112713 2439 1.575 - - 0.738 0.837 - - - - - POU class 3 homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-980526-370]
37. sar1b ENSDARG00000103403 1699 1.571 - - 0.815 - - - 0.756 - - secretion associated, Ras related GTPase 1B [Source:ZFIN;Acc:ZDB-GENE-040426-1958]
38. mapkapk5 ENSDARG00000028082 443 1.571 0.707 - - - - - 0.864 - - mitogen-activated protein kinase-activated protein kinase 5 [Source:ZFIN;Acc:ZDB-GENE-040718-25]
39. xrn1 ENSDARG00000091652 2864 1.57 - - 0.824 - - 0.746 - - - 5'-3' exoribonuclease 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1203]
40. bub1bb ENSDARG00000074927 1667 1.559 - - 0.827 0.732 - - - - - BUB1 mitotic checkpoint serine/threonine kinase Bb [Source:ZFIN;Acc:ZDB-GENE-030829-51]
41. marcksa ENSDARG00000004049 2518 1.555 - - 0.745 0.810 - - - - - myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
42. tmed3 ENSDARG00000028816, ENSDARG00000113132 1686 1.551 - 0.750 0.801 - - - - - - transmembrane p24 trafficking protein 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8335]
43. nup35 ENSDARG00000012222 1212 1.535 - - - 0.790 - - 0.745 - - nucleoporin 35 [Source:ZFIN;Acc:ZDB-GENE-030131-9407]
44. lzic ENSDARG00000055899 638 1.535 - 0.705 - 0.830 - - - - - leucine zipper and CTNNBIP1 domain containing [Source:ZFIN;Acc:ZDB-GENE-040718-342]
45. acot13 ENSDARG00000061728, ENSDARG00000114746 516 1.534 0.812 - - - - - 0.722 - - acyl-CoA thioesterase 13 [Source:ZFIN;Acc:ZDB-GENE-060503-437]
46. chrac1 ENSDARG00000042337 2590 1.534 - - - 0.830 - - 0.704 - - chromatin accessibility complex 1 [Source:ZFIN;Acc:ZDB-GENE-050227-18]
47. ppat ENSDARG00000004517 3349 1.518 - - - 0.803 - 0.715 - - - phosphoribosyl pyrophosphate amidotransferase [Source:ZFIN;Acc:ZDB-GENE-041210-323]
48. tet3 ENSDARG00000062646 6672 1.518 - - - 0.813 - - 0.705 - - tet methylcytosine dioxygenase 3 [Source:ZFIN;Acc:ZDB-GENE-060526-109]
49. FAM114A2 ENSDARG00000079508 1226 1.516 - - - 0.785 - - 0.731 - - family with sequence similarity 114, member A2 [Source:ZFIN;Acc:ZDB-GENE-030131-6308]
50. abca1a ENSDARG00000074635 1085 1.515 - - - 0.788 - - 0.727 - - ATP-binding cassette, sub-family A (ABC1), member 1A [Source:ZFIN;Acc:ZDB-GENE-031006-12]
51. aebp1 ENSDARG00000091726 906 1.508 - - - - - 0.720 0.788 - - AE binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2390]
52. nsd1a ENSDARG00000060016 2974 1.5 - - - 0.785 - - 0.715 - - nuclear receptor binding SET domain protein 1a [Source:ZFIN;Acc:ZDB-GENE-080519-3]
53. kctd12.2 ENSDARG00000053542, ENSDARG00000113200 2951 1.495 - - - 0.751 - - 0.744 - - potassium channel tetramerisation domain containing 12.2 [Source:ZFIN;Acc:ZDB-GENE-060117-4]
54. GANAB_1 GANAB_1 685 1.467 - - - 0.740 - - 0.727 - -
55. mat2b ENSDARG00000012932 3146 1.454 - - 0.700 - - - - 0.754 - methionine adenosyltransferase II, beta [Source:ZFIN;Acc:ZDB-GENE-030131-786]
56. ptprga ENSDARG00000045006 719 1.451 - - - - - 0.733 0.718 - - protein tyrosine phosphatase, receptor type, g a [Source:ZFIN;Acc:ZDB-GENE-101101-4]
57. pdpk1a ENSDARG00000062304 213 1.419 - - - - - 0.713 0.706 - - 3-phosphoinositide dependent protein kinase 1a [Source:ZFIN;Acc:ZDB-GENE-061013-109]
58. abcg2c ENSDARG00000058574 1261 1.416 - - - 0.701 - 0.715 - - - ATP-binding cassette, sub-family G (WHITE), member 2c [Source:ZFIN;Acc:ZDB-GENE-050517-37]
59. rnf121 ENSDARG00000060282 1809 1.406 - - - - - 0.705 0.701 - - ring finger protein 121 [Source:ZFIN;Acc:ZDB-GENE-050809-3]
60. wdr73 ENSDARG00000023152, ENSDARG00000111497 217 0.981 - - 0.981 - - - - - - WD repeat domain 73 [Source:ZFIN;Acc:ZDB-GENE-050417-126]
61. CABZ01073032.1 CABZ01073032.1 125 0.978 - - 0.978 - - - - - -
62. zgc:66484 ENSDARG00000030478 167 0.976 - - 0.976 - - - - - - zgc:66484 [Source:ZFIN;Acc:ZDB-GENE-030131-5768]
63. PLA2G3_1 PLA2G3_1 411 0.975 - - 0.975 - - - - - -
64. BX649554.3_1 BX649554.3_1 1071 0.974 - - 0.974 - - - - - -
65. jag1b ENSDARG00000013168 1002 0.974 - - 0.974 - - - - - - jagged 1b [Source:ZFIN;Acc:ZDB-GENE-011128-4]
66. RNase_MRP RNase_MRP 118 0.974 - - 0.974 - - - - - -
67. CR942805.1 CR942805.1 94 0.973 - - 0.973 - - - - - -
68. CABZ01113061.1 CABZ01113061.1 51 0.973 - - 0.973 - - - - - -
69. map3k10 ENSDARG00000055672 284 0.973 - - 0.973 - - - - - - mitogen-activated protein kinase kinase kinase 10 [Source:ZFIN;Acc:ZDB-GENE-050419-112]
70. TRIM14_6 TRIM14_6 342 0.973 - - 0.973 - - - - - -
71. wdr66 ENSDARG00000059855 276 0.973 - - 0.973 - - - - - - WD repeat domain 66 [Source:ZFIN;Acc:ZDB-GENE-060526-328]
72. CMTM8 CMTM8 71 0.973 - - 0.973 - - - - - -
73. zgc:113265 318 0.973 - - 0.973 - - - - - - zgc:113265, transcript variant X3
74. il2rb ENSDARG00000075720 116 0.973 - - 0.973 - - - - - - interleukin 2 receptor, beta [Source:ZFIN;Acc:ZDB-GENE-080108-2]
75. inpp5e ENSDARG00000103926 567 0.973 - - 0.973 - - - - - - inositol polyphosphate-5-phosphatase E [Source:ZFIN;Acc:ZDB-GENE-050809-23]
76. zgc:158260 ENSDARG00000101703 103 0.973 - - 0.973 - - - - - - zgc:158260 [Source:ZFIN;Acc:ZDB-GENE-061201-24]
77. msgn1 ENSDARG00000070546 188 0.973 - - 0.973 - - - - - - mesogenin 1 [Source:ZFIN;Acc:ZDB-GENE-030722-1]
78. TRAK1 212 0.972 - - 0.972 - - - - - - trafficking protein, kinesin binding 1, transcript variant X6
79. slc35c1 ENSDARG00000104669 65 0.971 - - 0.971 - - - - - - solute carrier family 35 (GDP-fucose transporter), member C1 [Source:ZFIN;Acc:ZDB-GENE-041212-11]
80. mxra5b ENSDARG00000076309 190 0.971 - - 0.971 - - - - - - matrix-remodelling associated 5b [Source:ZFIN;Acc:ZDB-GENE-081104-119]
81. ndst2b ENSDARG00000060678 453 0.971 - - 0.971 - - - - - - N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2b [Source:ZFIN;Acc:ZDB-GENE-100430-2]
82. CU571255.1 CU571255.1 902 0.971 - - 0.971 - - - - - -
83. TATDN3 ENSDARG00000044072 914 0.97 - - 0.970 - - - - - - TatD DNase domain containing 3 [Source:HGNC Symbol;Acc:HGNC:27010]
84. rapgef1a ENSDARG00000043593 416 0.97 - - 0.970 - - - - - - Rap guanine nucleotide exchange factor (GEF) 1a [Source:ZFIN;Acc:ZDB-GENE-081105-26]
85. rcbtb2 ENSDARG00000090687 1658 0.969 - - 0.969 - - - - - - regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 [Source:ZFIN;Acc:ZDB-GENE-071016-3]
86. F8A3 F8A3 646 0.969 - - 0.969 - - - - - -
87. GPSM3 GPSM3 257 0.968 - - 0.968 - - - - - -
88. brf1a ENSDARG00000017835 206 0.968 - - 0.968 - - - - - - BRF1, RNA polymerase III transcription initiation factor a [Source:ZFIN;Acc:ZDB-GENE-030131-6334]
89. CAMSAP2 CAMSAP2 109 0.967 - - 0.967 - - - - - -
90. pho ENSDARG00000035133 670 0.967 - - 0.967 - - - - - - phoenix [Source:ZFIN;Acc:ZDB-GENE-030131-5935]
91. BX571794.1 ENSDARG00000097619 376 0.967 - - 0.967 - - - - - -
92. CU929394.1 CU929394.1 405 0.967 - - 0.967 - - - - - -
93. herc2 ENSDARG00000073841 486 0.966 - - 0.966 - - - - - - HECT and RLD domain containing E3 ubiquitin protein ligase 2 [Source:ZFIN;Acc:ZDB-GENE-070718-6]
94. twist2 ENSDARG00000078266 499 0.966 - - 0.966 - - - - - - twist2 [Source:ZFIN;Acc:ZDB-GENE-980526-235]
95. dact1 ENSDARG00000101635 1303 0.966 - - 0.966 - - - - - - dishevelled-binding antagonist of beta-catenin 1 [Source:ZFIN;Acc:ZDB-GENE-040623-3]
96. CYP27A1_1 CYP27A1_1 329 0.966 - - 0.966 - - - - - -
97. pcdh8 ENSDARG00000006467 317 0.965 - - 0.965 - - - - - - protocadherin 8 [Source:ZFIN;Acc:ZDB-GENE-980526-242]
98. antxr1c ENSDARG00000063612 3203 0.965 - - 0.965 - - - - - - ANTXR cell adhesion molecule 1c [Source:ZFIN;Acc:ZDB-GENE-090514-5]
99. arhgap29b ENSDARG00000017748 812 0.965 - - 0.965 - - - - - - Rho GTPase activating protein 29b [Source:ZFIN;Acc:ZDB-GENE-031010-44]
100. DACT3 DACT3 766 0.965 - - 0.965 - - - - - -

There are 1405 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA