Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for trub1

Gene Name Gene ID Reads Annotation
trub1 ENSDARG00000053805 202 TruB pseudouridine (psi) synthase family member 1 [Source:ZFIN;Acc:ZDB-GENE-080723-73]










Genes with expression patterns similar to trub1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. trub1 ENSDARG00000053805 202 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 TruB pseudouridine (psi) synthase family member 1 [Source:ZFIN;Acc:ZDB-GENE-080723-73]
2. gtf3aa ENSDARG00000030267 217 1.839 - 0.904 - - - 0.935 - - - general transcription factor IIIAa [Source:ZFIN;Acc:ZDB-GENE-041006-1]
3. im:7136021 ENSDARG00000054128 79 1.669 - - - - - 0.854 0.815 - - im:7136021 [Source:ZFIN;Acc:ZDB-GENE-041008-74]
4. ppp1r14c ENSDARG00000077341 1587 1.668 - 0.893 - - - - 0.775 - - protein phosphatase 1, regulatory (inhibitor) subunit 14C [Source:ZFIN;Acc:ZDB-GENE-050706-92]
5. pold3 ENSDARG00000076169 694 1.652 - 0.928 - - - - - - 0.724 polymerase (DNA-directed), delta 3, accessory subunit [Source:ZFIN;Acc:ZDB-GENE-060512-59]
6. fancc ENSDARG00000055232, ENSDARG00000116499 50 1.617 0.883 - - - - - 0.734 - - FA complementation group C [Source:ZFIN;Acc:ZDB-GENE-060510-2]
7. rars2 ENSDARG00000032277 54 1.614 - - - - - 0.799 0.815 - - arginyl-tRNA synthetase 2, mitochondrial (putative) [Source:ZFIN;Acc:ZDB-GENE-040426-1244]
8. adam8b ENSDARG00000057644 108 1.607 0.712 - - - - 0.895 - - - ADAM metallopeptidase domain 8b [Source:ZFIN;Acc:ZDB-GENE-070808-1]
9. ehbp1l1b ENSDARG00000079895 559 1.579 - 0.854 - - - 0.725 - - - EH domain binding protein 1-like 1b [Source:ZFIN;Acc:ZDB-GENE-091204-238]
10. ccdc103 ENSDARG00000053455 81 1.575 0.869 - - - - - - - 0.706 coiled-coil domain containing 103 [Source:ZFIN;Acc:ZDB-GENE-040718-253]
11. mirlet7i 192 1.57 - 0.707 - - - 0.863 - - - microRNA let-7i
12. DCUN1D3 ENSDARG00000011493 319 1.556 0.846 - - - - - - - 0.710 defective in cullin neddylation 1 domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-070928-2]
13. BX530018.3 ENSDARG00000107022 614 1.546 - 0.812 - - - 0.734 - - -
14. zgc:91811 zgc:91811 186 1.546 - - - - - 0.822 - - 0.724
15. fbxo21 ENSDARG00000076611 466 1.543 0.790 0.753 - - - - - - - F-box protein 21 [Source:ZFIN;Acc:ZDB-GENE-100922-229]
16. trmt112 ENSDARG00000071878, ENSDARG00000109878 930 1.52 - 0.810 - - - 0.710 - - - tRNA methyltransferase 11-2 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050522-30]
17. narf_1 ENSDARG00000024184, ENSDARG00000110086 127 1.514 0.809 - - - - - 0.705 - - nuclear prelamin A recognition factor [Source:ZFIN;Acc:ZDB-GENE-040718-31]
18. mad1l1 ENSDARG00000033852 464 1.513 - - - - - 0.752 - - 0.761 mitotic arrest deficient 1 like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1081]
19. ZBTB22 ZBTB22 1053 1.512 0.759 - - - - 0.753 - - -
20. nxt2 ENSDARG00000061527, ENSDARG00000113656 277 1.509 0.718 - - - - - - 0.791 - nuclear transport factor 2-like export factor 2 [Source:ZFIN;Acc:ZDB-GENE-050521-1]
21. DNLZ ENSDARG00000068655 229 1.461 - 0.724 - - - 0.737 - - - DNL-type zinc finger [Source:ZFIN;Acc:ZDB-GENE-070112-1482]
22. rnf41l ENSDARG00000073918 329 1.447 - 0.727 - - - 0.720 - - - ring finger protein 41, like [Source:ZFIN;Acc:ZDB-GENE-030131-9441]
23. nt5dc3 ENSDARG00000062949 816 1.433 - 0.709 - - - 0.724 - - - 5'-nucleotidase domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-080523-3]
24. loxl3b ENSDARG00000039563 1657 1.43 - 0.728 - - - - - - 0.702 lysyl oxidase-like 3b [Source:ZFIN;Acc:ZDB-GENE-030131-8210]
25. nmt2 ENSDARG00000021808 510 0.957 - 0.957 - - - - - - - N-myristoyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-717]
26. CU571255.1 CU571255.1 902 0.954 - 0.954 - - - - - - -
27. col11a2 ENSDARG00000012422 3204 0.953 - 0.953 - - - - - - - collagen, type XI, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-000208-23]
28. si:ch211-253b1.4 si:ch211-253b1.4 261 0.949 - 0.949 - - - - - - -
29. ubald1a ENSDARG00000002362 181 0.946 - - - - - 0.946 - - - UBA-like domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-040718-191]
30. ltbp3 325 0.945 - 0.945 - - - - - - - latent transforming growth factor beta binding protein 3, transcript variant X3
31. ypel2b ENSDARG00000087258, ENSDARG00000116766 539 0.941 - 0.941 - - - - - - - yippee-like 2b [Source:ZFIN;Acc:ZDB-GENE-110419-2]
32. BX470254.1 ENSDARG00000097402 1389 0.94 - 0.940 - - - - - - -
33. zgc:174700 zgc:174700 35 0.929 0.929 - - - - - - - -
34. mfsd6b ENSDARG00000054583 239 0.928 - - - - - 0.928 - - - major facilitator superfamily domain containing 6b [Source:ZFIN;Acc:ZDB-GENE-040912-84]
35. CABZ01044297.1 CABZ01044297.1 2015 0.927 - 0.927 - - - - - - -
36. CU074314.1 CU074314.1 354 0.926 - - - - - 0.926 - - -
37. dnmt5 dnmt5 379 0.924 - 0.924 - - - - - - -
38. si:dkey-154p10.3 ENSDARG00000068366 153 0.924 - - - - - 0.924 - - - si:dkey-154p10.3 [Source:ZFIN;Acc:ZDB-GENE-070912-380]
39. ybey_1 ENSDARG00000011999, ENSDARG00000110510 75 0.92 - 0.920 - - - - - - - ybeY metalloendoribonuclease [Source:ZFIN;Acc:ZDB-GENE-030131-437]
40. ADAMTS17 ENSDARG00000075555 887 0.909 - - - - - 0.909 - - - ADAM metallopeptidase with thrombospondin type 1 motif, 17 [Source:ZFIN;Acc:ZDB-GENE-121030-7]
41. zgc:91999 ENSDARG00000105001 129 0.907 - 0.907 - - - - - - - zgc:91999 [Source:ZFIN;Acc:ZDB-GENE-040801-241]
42. col9a3 ENSDARG00000037845 6564 0.904 - 0.904 - - - - - - - collagen, type IX, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9799]
43. ebp ENSDARG00000046098 502 0.903 - - - - - 0.903 - - - EBP, cholestenol delta-isomerase [Source:ZFIN;Acc:ZDB-GENE-040718-12]
44. epyc ENSDARG00000056950 7783 0.903 - 0.903 - - - - - - - epiphycan [Source:ZFIN;Acc:ZDB-GENE-041008-9]
45. CABZ01085858.1 CABZ01085858.1 355 0.901 - 0.901 - - - - - - -
46. mmp17b ENSDARG00000102956 249 0.901 - 0.901 - - - - - - - matrix metallopeptidase 17b [Source:ZFIN;Acc:ZDB-GENE-081107-17]
47. noa1 ENSDARG00000102934 66 0.901 - - - - - 0.901 - - - nitric oxide associated 1 [Source:ZFIN;Acc:ZDB-GENE-080220-18]
48. METTL12 METTL12 415 0.899 - 0.899 - - - - - - -
49. si:ch73-362m14.2 ENSDARG00000090164 47 0.899 0.899 - - - - - - - - si:ch73-362m14.2 [Source:ZFIN;Acc:ZDB-GENE-120215-235]
50. zgc:171310 ENSDARG00000110627 23 0.899 0.899 - - - - - - - - zgc:171310 [Source:ZFIN;Acc:ZDB-GENE-070822-11]
51. lect1 7551 0.897 - 0.897 - - - - - - - leukocyte cell derived chemotaxin 1, transcript variant X1
52. OSBPL3 OSBPL3 145 0.895 - - - - - 0.895 - - -
53. comta ENSDARG00000015337 93 0.894 - - - - - 0.894 - - - catechol-O-methyltransferase a [Source:ZFIN;Acc:ZDB-GENE-050913-117]
54. ntla ntla 926 0.892 - 0.892 - - - - - - -
55. XXYLT1 ENSDARG00000088799 193 0.892 0.892 - - - - - - - - xyloside xylosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-120521-2]
56. ppm1la ENSDARG00000063218 2142 0.889 - 0.889 - - - - - - - protein phosphatase, Mg2+/Mn2+ dependent, 1La [Source:ZFIN;Acc:ZDB-GENE-061103-118]
57. pi15a ENSDARG00000045378 2361 0.888 - 0.888 - - - - - - - peptidase inhibitor 15a [Source:ZFIN;Acc:ZDB-GENE-040724-135]
58. CU855821.2 CU855821.2 21 0.888 - - - - - 0.888 - - -
59. BX322608.1 ENSDARG00000111690 326 0.888 - 0.888 - - - - - - -
60. CLMP 108 0.887 0.887 - - - - - - - - CXADR like membrane protein
61. trim37 ENSDARG00000076473 115 0.887 0.887 - - - - - - - - tripartite motif containing 37 [Source:ZFIN;Acc:ZDB-GENE-030131-2957]
62. cenpp ENSDARG00000044135 96 0.886 - - - - - 0.886 - - - centromere protein P [Source:ZFIN;Acc:ZDB-GENE-040801-74]
63. PAQR4 PAQR4 2150 0.886 - 0.886 - - - - - - -
64. guf1 ENSDARG00000029088 231 0.886 - - - - - 0.886 - - - GUF1 homolog, GTPase [Source:ZFIN;Acc:ZDB-GENE-030131-4289]
65. si:ch211-224l10.4 ENSDARG00000088762 36 0.884 0.884 - - - - - - - - si:ch211-224l10.4 [Source:ZFIN;Acc:ZDB-GENE-090312-125]
66. TNFRSF14 TNFRSF14 330 0.884 0.884 - - - - - - - -
67. si:dkey-20i10.7 ENSDARG00000075269 133 0.883 0.883 - - - - - - - - si:dkey-20i10.7 [Source:ZFIN;Acc:ZDB-GENE-090313-232]
68. ctu1 ENSDARG00000020986 135 0.883 - - - - - - 0.883 - - cytosolic thiouridylase subunit 1 homolog (S. pombe) [Source:ZFIN;Acc:ZDB-GENE-040426-704]
69. si:dkey-254e13.6 ENSDARG00000088301 191 0.882 - - - - - 0.882 - - - si:dkey-254e13.6 [Source:ZFIN;Acc:ZDB-GENE-070705-420]
70. si:dkey-189d19.2 si:dkey-189d19.2 45 0.882 - - - - - 0.882 - - -
71. DDHD1 DDHD1 250 0.882 - - - - - 0.882 - - -
72. si:dkey-242k1.6 ENSDARG00000101205 112 0.881 - - - - - - 0.881 - - si:dkey-242k1.6 [Source:ZFIN;Acc:ZDB-GENE-041008-84]
73. UFSP1 ENSDARG00000061610 81 0.881 - - - - - 0.881 - - - UFM1-specific peptidase 1 (non-functional) [Source:ZFIN;Acc:ZDB-GENE-070410-124]
74. cyp2k16 ENSDARG00000102981 560 0.88 - - - - - 0.880 - - - cytochrome P450, family 2, subfamily K, polypeptide16 [Source:ZFIN;Acc:ZDB-GENE-041010-37]
75. clu ENSDARG00000010434 498 0.88 - 0.880 - - - - - - - clusterin [Source:ZFIN;Acc:ZDB-GENE-040426-1774]
76. ap4s1 ENSDARG00000054220 346 0.88 - - - - - 0.880 - - - adaptor related protein complex 4 subunit sigma 1 [Source:ZFIN;Acc:ZDB-GENE-030616-404]
77. plcl1 ENSDARG00000067676 2457 0.879 - 0.879 - - - - - - - phospholipase C like 1 [Source:ZFIN;Acc:ZDB-GENE-090313-194]
78. si:dkey-283b1.7 ENSDARG00000053460 10 0.879 - - - - - 0.879 - - - si:dkey-283b1.7 [Source:ZFIN;Acc:ZDB-GENE-120215-126]
79. prrg2 ENSDARG00000087193 15 0.879 - - - - - 0.879 - - - proline rich Gla (G-carboxyglutamic acid) 2 [Source:ZFIN;Acc:ZDB-GENE-130625-1]
80. gfm2 ENSDARG00000005561 302 0.878 - - - - - 0.878 - - - G elongation factor, mitochondrial 2 [Source:ZFIN;Acc:ZDB-GENE-060201-3]
81. phkg1b ENSDARG00000069498 43 0.878 - - - - - 0.878 - - - phosphorylase kinase, gamma 1b (muscle) [Source:ZFIN;Acc:ZDB-GENE-050522-52]
82. tmco4 ENSDARG00000078924 330 0.878 0.878 - - - - - - - - transmembrane and coiled-coil domains 4 [Source:ZFIN;Acc:ZDB-GENE-041008-216]
83. TULP2 TULP2 38 0.876 - - - - - 0.876 - - -
84. CAMKV CAMKV 11 0.876 - - - - - 0.876 - - -
85. matn3b ENSDARG00000069265 856 0.876 - 0.876 - - - - - - - matrilin 3b [Source:ZFIN;Acc:ZDB-GENE-050221-9]
86. si:ch211-127i16.2 ENSDARG00000092976, ENSDARG00000116049 152 0.876 0.876 - - - - - - - - si:ch211-127i16.2 [Source:ZFIN;Acc:ZDB-GENE-091204-54]
87. si:dkey-286j17.3 si:dkey-286j17.3 8 0.875 0.875 - - - - - - - -
88. chrne ENSDARG00000034307, ENSDARG00000112263 1022 0.875 - 0.875 - - - - - - - cholinergic receptor, nicotinic, epsilon [Source:ZFIN;Acc:ZDB-GENE-040808-32]
89. rhcgl1 ENSDARG00000007080, ENSDARG00000111618 28 0.875 0.875 - - - - - - - - Rh family, C glycoprotein, like 1 [Source:ZFIN;Acc:ZDB-GENE-060209-2]
90. camk2a ENSDARG00000053617 950 0.875 - 0.875 - - - - - - - calcium/calmodulin-dependent protein kinase II alpha [Source:ZFIN;Acc:ZDB-GENE-051113-72]
91. ssrp1b ENSDARG00000016994 58 0.875 0.875 - - - - - - - - structure specific recognition protein 1b [Source:ZFIN;Acc:ZDB-GENE-041008-209]
92. palm1a ENSDARG00000026882, ENSDARG00000115356 3425 0.875 - 0.875 - - - - - - - paralemmin 1a [Source:ZFIN;Acc:ZDB-GENE-050417-409]
93. PEG3_4 PEG3_4 256 0.874 0.874 - - - - - - - -
94. atad1a ENSDARG00000023267 155 0.874 0.874 - - - - - - - - ATPase family, AAA domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-030616-593]
95. sox9b ENSDARG00000043923 5375 0.874 - 0.874 - - - - - - - SRY (sex determining region Y)-box 9b [Source:ZFIN;Acc:ZDB-GENE-001103-2]
96. si:dkey-247i3.4 si:dkey-247i3.4 89 0.874 - - - - - 0.874 - - -
97. slc25a26 ENSDARG00000058208, ENSDARG00000110562, ENSDARG00000111558 584 0.874 - 0.874 - - - - - - - solute carrier family 25 (S-adenosylmethionine carrier), member 26 [Source:ZFIN;Acc:ZDB-GENE-050913-126]
98. si:dkey-231k6.4 si:dkey-231k6.4 72 0.874 0.874 - - - - - - - -
99. si:dkey-253d23.3 ENSDARG00000095643 66 0.873 - - - - - 0.873 - - - si:dkey-253d23.3 [Source:ZFIN;Acc:ZDB-GENE-050208-330]
100. loxl1 ENSDARG00000054451 2485 0.873 - 0.873 - - - - - - - lysyl oxidase-like 1 [Source:ZFIN;Acc:ZDB-GENE-060503-693]

There are 1032 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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