Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for trmu

Gene Name Gene ID Reads Annotation
trmu ENSDARG00000043734 291 tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Source:ZFIN;Acc:ZDB-GENE-050522-540]










Genes with expression patterns similar to trmu

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. trmu ENSDARG00000043734 291 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Source:ZFIN;Acc:ZDB-GENE-050522-540]
2. plekhj1 ENSDARG00000025593 696 1.571 - 0.845 - - - - 0.726 - - pleckstrin homology domain containing, family J member 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2480]
3. bmb ENSDARG00000096603 120 1.567 - - - - - - 0.805 - 0.762 brambleberry [Source:ZFIN;Acc:ZDB-GENE-030131-5577]
4. gmcl1 ENSDARG00000020948 261 1.561 - 0.804 - - - - 0.757 - - germ cell-less, spermatogenesis associated 1 [Source:ZFIN;Acc:ZDB-GENE-030131-865]
5. wu:fb59d01 ENSDARG00000089361 171 1.561 - 0.799 - - - - - 0.762 - wu:fb59d01 [Source:ZFIN;Acc:ZDB-GENE-030131-1098]
6. TMEM245 ENSDARG00000070455 85 1.506 - 0.785 - - - - - 0.721 - transmembrane protein 245 [Source:ZFIN;Acc:ZDB-GENE-100922-188]
7. CU570976.1 ENSDARG00000097183 341 1.501 - - - - - 0.723 0.778 - -
8. tpra1 ENSDARG00000054930 850 1.484 - 0.771 - - - - - - 0.713 transmembrane protein, adipocyte asscociated 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4146]
9. si:dkey-183n20.2 si:dkey-183n20.2 210 1.481 - - - - - - 0.747 0.734 -
10. hrasb ENSDARG00000005651 662 1.467 - 0.709 - - - - - 0.758 - -Ha-ras Harvey rat sarcoma viral oncogene homolog b [Source:ZFIN;Acc:ZDB-GENE-050522-466]
11. vps26b ENSDARG00000015823, ENSDARG00000116682 1023 1.442 - 0.718 - - - 0.724 - - - VPS26, retromer complex component B [Source:ZFIN;Acc:ZDB-GENE-040426-2699]
12. rn7sk ENSDARG00000081270 149 1.442 - 0.724 - - - - - - 0.718 RNA, 7SK small nuclear [Source:ZFIN;Acc:ZDB-GENE-090323-1]
13. chmp7 ENSDARG00000041362 831 1.423 0.709 0.714 - - - - - - - charged multivesicular body protein 7 [Source:ZFIN;Acc:ZDB-GENE-040426-1750]
14. MED8 ENSDARG00000114425 459 1.418 0.703 - - - - - - - 0.715 mediator complex subunit 8 [Source:ZFIN;Acc:ZDB-GENE-040426-2091]
15. fam49bb ENSDARG00000045417 513 0.904 - 0.904 - - - - - - - family with sequence similarity 49, member Bb [Source:ZFIN;Acc:ZDB-GENE-040426-2590]
16. mmp9 ENSDARG00000042816 298 0.887 - 0.887 - - - - - - - matrix metallopeptidase 9 [Source:ZFIN;Acc:ZDB-GENE-040426-2132]
17. nr1d4b ENSDARG00000059370 243 0.885 - - - - - - 0.885 - - nuclear receptor subfamily 1, group D, member 4b [Source:ZFIN;Acc:ZDB-GENE-080403-6]
18. foxd2 ENSDARG00000058133 1150 0.872 - - - - - - 0.872 - - forkhead box D2 [Source:ZFIN;Acc:ZDB-GENE-980605-6]
19. dis3 ENSDARG00000060559, ENSDARG00000110345 92 0.864 - - - - - - 0.864 - - DIS3 exosome endoribonuclease and 3'-5' exoribonuclease [Source:ZFIN;Acc:ZDB-GENE-080213-3]
20. CT583658.1 CT583658.1 561 0.864 - - - - - - 0.864 - -
21. med28 ENSDARG00000037410, ENSDARG00000112591, ENSDARG00000113633, ENSDARG00000117136 629 0.861 - 0.861 - - - - - - - mediator complex subunit 28 [Source:ZFIN;Acc:ZDB-GENE-041121-4]
22. SLC17A7 SLC17A7 1226 0.861 - 0.861 - - - - - - -
23. zbtb2b ENSDARG00000028086, ENSDARG00000110834 1609 0.86 - 0.860 - - - - - - - zinc finger and BTB domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-040426-2753]
24. zer1 ENSDARG00000105123 682 0.857 - 0.857 - - - - - - - zyg-11 related, cell cycle regulator [Source:ZFIN;Acc:ZDB-GENE-040426-2307]
25. rad23b ENSDARG00000021550 2575 0.857 - 0.857 - - - - - - - RAD23 homolog B, nucleotide excision repair protein [Source:ZFIN;Acc:ZDB-GENE-040426-1487]
26. gtf2a2 ENSDARG00000053685, ENSDARG00000109493, ENSDARG00000113094 515 0.849 - 0.849 - - - - - - - general transcription factor IIA, 2 [Source:ZFIN;Acc:ZDB-GENE-050522-513]
27. gmnn ENSDARG00000035957, ENSDARG00000113743 682 0.839 - 0.839 - - - - - - - geminin, DNA replication inhibitor [Source:ZFIN;Acc:ZDB-GENE-030429-30]
28. egfl7 ENSDARG00000100657 776 0.839 - - - - - - 0.839 - - EGF-like-domain, multiple 7 [Source:ZFIN;Acc:ZDB-GENE-040429-2]
29. srek1 ENSDARG00000009764, ENSDARG00000114600 319 0.839 - - - - - - 0.839 - - splicing regulatory glutamine/lysine-rich protein 1 [Source:ZFIN;Acc:ZDB-GENE-040801-132]
30. NEDD4 NEDD4 2040 0.838 - 0.838 - - - - - - -
31. RPS6KC1 ENSDARG00000104103 746 0.837 - 0.837 - - - - - - - ribosomal protein S6 kinase polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-081031-83]
32. CR925880.1 CR925880.1 196 0.835 - 0.835 - - - - - - -
33. mcmbp ENSDARG00000055314 731 0.834 - - - - - 0.834 - - - minichromosome maintenance complex binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-9676]
34. fam78a fam78a 238 0.831 - - - - - - 0.831 - -
35. kif15 ENSDARG00000012073 1936 0.831 - 0.831 - - - - - - - kinesin family member 15 [Source:ZFIN;Acc:ZDB-GENE-050622-16]
36. phrf1 ENSDARG00000075252 1982 0.83 - 0.830 - - - - - - - PHD and ring finger domains 1 [Source:ZFIN;Acc:ZDB-GENE-030131-624]
37. clk2b ENSDARG00000059870 525 0.822 - - - - - - 0.822 - - CDC-like kinase 2b [Source:ZFIN;Acc:ZDB-GENE-060929-1126]
38. ripk4 ENSDARG00000043211 775 0.821 - 0.821 - - - - - - - receptor-interacting serine-threonine kinase 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2042]
39. mgaa ENSDARG00000078784 1344 0.82 - 0.820 - - - - - - - MGA, MAX dimerization protein a [Source:ZFIN;Acc:ZDB-GENE-030603-1]
40. ube3b ENSDARG00000061960 978 0.82 - 0.820 - - - - - - - ubiquitin protein ligase E3B [Source:ZFIN;Acc:ZDB-GENE-060526-231]
41. gpx8 ENSDARG00000013302 1427 0.819 - 0.819 - - - - - - - glutathione peroxidase 8 (putative) [Source:ZFIN;Acc:ZDB-GENE-040426-965]
42. ddb2 ENSDARG00000041140, ENSDARG00000114723 827 0.819 - - - - - - 0.819 - - damage-specific DNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-050419-169]
43. ext2 ENSDARG00000056648 1322 0.819 - 0.819 - - - - - - - exostosin glycosyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-041124-3]
44. slc6a5_1 ENSDARG00000067964, ENSDARG00000111378 1111 0.818 - 0.818 - - - - - - - solute carrier family 6 (neurotransmitter transporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-050105-2]
45. mgat5 ENSDARG00000071506 324 0.818 - 0.818 - - - - - - - alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase [Source:ZFIN;Acc:ZDB-GENE-060616-238]
46. gfra4 gfra4 287 0.814 - 0.814 - - - - - - -
47. rtn4ip1 ENSDARG00000031366 388 0.813 - - - - - - 0.813 - - reticulon 4 interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1314]
48. si:dkey-161j23.7 ENSDARG00000092882 180 0.813 - 0.813 - - - - - - - si:dkey-161j23.7 [Source:ZFIN;Acc:ZDB-GENE-091204-391]
49. SHISA9 SHISA9 154 0.813 - - - - - 0.813 - - -
50. polr2i ENSDARG00000040443, ENSDARG00000110652 879 0.812 - 0.812 - - - - - - - polymerase (RNA) II (DNA directed) polypeptide I [Source:ZFIN;Acc:ZDB-GENE-041010-106]
51. LRRC8A LRRC8A 406 0.811 - - - - - - 0.811 - -
52. arrdc2 ENSDARG00000020761 621 0.811 - 0.811 - - - - - - - arrestin domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7146]
53. psmf1 ENSDARG00000022652 527 0.811 - 0.811 - - - - - - - proteasome inhibitor subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040718-282]
54. vwa9 1013 0.809 - 0.809 - - - - - - - von Willebrand factor A domain containing 9, transcript variant X1
55. si:ch211-200p22.4 ENSDARG00000029170, ENSDARG00000110266 175 0.807 - 0.807 - - - - - - - si:ch211-200p22.4 [Source:ZFIN;Acc:ZDB-GENE-081104-61]
56. znf280d ENSDARG00000077013 1387 0.805 - - - - - - 0.805 - - zinc finger protein 280D [Source:ZFIN;Acc:ZDB-GENE-030131-2260]
57. CABZ01079241.1 ENSDARG00000098424 88 0.804 - - - - - - - 0.804 - zinc finger Y-chromosomal protein 1-like [Source:NCBI gene;Acc:563292]
58. si:ch211-238e22.1 si:ch211-238e22.1 1032 0.802 - - - - - 0.802 - - -
59. tsnaxip1 ENSDARG00000030512 197 0.802 - - - - - - 0.802 - - translin-associated factor X interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-070424-39]
60. C16H1orf172 C16H1orf172 909 0.802 - 0.802 - - - - - - -
61. tmem169 tmem169 592 0.801 - - - - - - 0.801 - -
62. tmem39a ENSDARG00000102746 900 0.801 - 0.801 - - - - - - - transmembrane protein 39A [Source:ZFIN;Acc:ZDB-GENE-030131-1928]
63. apln ENSDARG00000053279 858 0.801 0.801 - - - - - - - - apelin [Source:ZFIN;Acc:ZDB-GENE-070521-8]
64. crfb6 1137 0.8 - - - - - - 0.800 - - cytokine receptor family member b6
65. alx4a ENSDARG00000088332 895 0.798 - 0.798 - - - - - - - ALX homeobox 4a [Source:ZFIN;Acc:ZDB-GENE-070712-3]
66. tbx3a ENSDARG00000002216 2270 0.796 - 0.796 - - - - - - - T-box 3a [Source:ZFIN;Acc:ZDB-GENE-070209-80]
67. becn1 ENSDARG00000079128 581 0.794 - 0.794 - - - - - - - beclin 1, autophagy related [Source:ZFIN;Acc:ZDB-GENE-040426-1666]
68. CCDC57_1 CCDC57_1 35 0.794 - 0.794 - - - - - - -
69. slc24a1 ENSDARG00000041431 33 0.793 - - - - - - 0.793 - - solute carrier family 24 (sodium/potassium/calcium exchanger), member 1 [Source:ZFIN;Acc:ZDB-GENE-060503-191]
70. RSPH1 289 0.792 - - - - - - 0.792 - - radial spoke head 1 homolog (Chlamydomonas), transcript variant X2
71. shroom4 ENSDARG00000079900 1852 0.792 - - - - - 0.792 - - - shroom family member 4 [Source:ZFIN;Acc:ZDB-GENE-041111-246]
72. lrrc8c ENSDARG00000099911 1499 0.791 0.791 - - - - - - - - leucine rich repeat containing 8 VRAC subunit C [Source:ZFIN;Acc:ZDB-GENE-030131-2965]
73. wu:fj30f06 480 0.791 - 0.791 - - - - - - - wu:fj30f06, transcript variant X1
74. si:ch211-239f4.4 si:ch211-239f4.4 12 0.79 - - - - - - 0.790 - -
75. carf ENSDARG00000019950 303 0.79 - 0.790 - - - - - - - calcium responsive transcription factor [Source:ZFIN;Acc:ZDB-GENE-070912-172]
76. wdr20b_1 ENSDARG00000041239 212 0.79 - - - - - - 0.790 - - WD repeat domain 20b [Source:ZFIN;Acc:ZDB-GENE-041014-234]
77. tmem51a ENSDARG00000068575, ENSDARG00000114656 596 0.79 - 0.790 - - - - - - - transmembrane protein 51a [Source:ZFIN;Acc:ZDB-GENE-061103-481]
78. BX682552.2 BX682552.2 1427 0.789 - 0.789 - - - - - - -
79. ctdnep1a ENSDARG00000016519, ENSDARG00000115280 596 0.788 - 0.788 - - - - - - - CTD nuclear envelope phosphatase 1a [Source:ZFIN;Acc:ZDB-GENE-041114-177]
80. htr1fa ENSDARG00000002773, ENSDARG00000109862 38 0.788 - 0.788 - - - - - - - 5-hydroxytryptamine (serotonin) receptor 1Fa [Source:ZFIN;Acc:ZDB-GENE-081105-125]
81. snupn ENSDARG00000008395 507 0.788 - - - - - - 0.788 - - snurportin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3464]
82. jam2a ENSDARG00000058996 701 0.786 - - - - - 0.786 - - - junctional adhesion molecule 2a [Source:ZFIN;Acc:ZDB-GENE-031204-3]
83. HNRNPUL2 HNRNPUL2 110 0.786 - - - - - - 0.786 - -
84. zgc:175008 zgc:175008 55 0.786 - - - - - - 0.786 - -
85. si:dkey-204f11.49p si:dkey-204f11.49p 97 0.786 - - - - - - 0.786 - -
86. zgc:174697 zgc:174697 128 0.786 - - - - - - 0.786 - -
87. si:ch211-222k6.3 ENSDARG00000071578 127 0.786 - - - - - - 0.786 - - si:ch211-222k6.3 [Source:ZFIN;Acc:ZDB-GENE-050208-567]
88. ppardb ENSDARG00000009473 1601 0.785 - 0.785 - - - - - - - peroxisome proliferator-activated receptor delta b [Source:ZFIN;Acc:ZDB-GENE-000112-47]
89. asnsd1 830 0.783 - 0.783 - - - - - - - asparagine synthetase domain containing 1, transcript variant X1
90. lztfl1 ENSDARG00000105010 1697 0.783 - - - - - - 0.783 - - leucine zipper transcription factor-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-945]
91. kcnj8 ENSDARG00000045589 92 0.783 - - - - - - 0.783 - - potassium inwardly-rectifying channel, subfamily J, member 8 [Source:ZFIN;Acc:ZDB-GENE-060308-1]
92. si:dkeyp-33e11.3 si:dkeyp-33e11.3 306 0.782 - 0.782 - - - - - - -
93. TMEM186 ENSDARG00000074264, ENSDARG00000109974 245 0.782 - - - - - 0.782 - - - transmembrane protein 186 [Source:ZFIN;Acc:ZDB-GENE-081022-122]
94. masp2 ENSDARG00000007988 331 0.782 - 0.782 - - - - - - - mannan-binding lectin serine peptidase 2 [Source:ZFIN;Acc:ZDB-GENE-060130-154]
95. myoz3a ENSDARG00000067701 100 0.782 - - - - - 0.782 - - - myozenin 3a [Source:ZFIN;Acc:ZDB-GENE-111012-4]
96. ehmt1a ENSDARG00000068157 855 0.782 - 0.782 - - - - - - - euchromatic histone-lysine N-methyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-040724-44]
97. vipr1b ENSDARG00000059058 62 0.781 - 0.781 - - - - - - - vasoactive intestinal peptide receptor 1b [Source:ZFIN;Acc:ZDB-GENE-050311-6]
98. CU571169.5 CU571169.5 353 0.781 - - - - - - 0.781 - -
99. fam65a 731 0.78 - 0.780 - - - - - - - family with sequence similarity 65, member A, transcript variant X5
100. si:dkeyp-118b1.2 ENSDARG00000079131 705 0.779 - - - - - - 0.779 - - si:dkeyp-118b1.2 [Source:ZFIN;Acc:ZDB-GENE-030131-7685]

There are 496 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA