Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for trim55b

Gene Name Gene ID Reads Annotation
trim55b ENSDARG00000058158 586 tripartite motif containing 55b [Source:ZFIN;Acc:ZDB-GENE-060312-37]










Genes with expression patterns similar to trim55b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. trim55b ENSDARG00000058158 586 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 tripartite motif containing 55b [Source:ZFIN;Acc:ZDB-GENE-060312-37]
2. rp42-pen rp42-pen 3395 2.679 0.915 0.938 - - - - 0.826 - -
3. CABZ01086825.1 CABZ01086825.1 573 2.637 - 0.795 - - - - 0.900 0.942 -
4. asb2a asb2a 845 2.63 - 0.776 - - - - 0.935 0.919 -
5. tmem180 tmem180 430 2.555 0.893 0.761 - - - 0.901 - - -
6. pdlim3b ENSDARG00000014248, ENSDARG00000111275 708 2.545 - 0.776 - - - 0.933 0.836 - - PDZ and LIM domain 3b [Source:ZFIN;Acc:ZDB-GENE-060130-104]
7. si:ch211-51c14.1 ENSDARG00000054645, ENSDARG00000110953 2434 2.456 - - - - - 0.911 0.794 0.751 - si:ch211-51c14.1 [Source:ZFIN;Acc:ZDB-GENE-120215-48]
8. kif21a ENSDARG00000061131 913 2.453 0.793 0.767 - - - - 0.893 - - kinesin family member 21A [Source:ZFIN;Acc:ZDB-GENE-110411-237]
9. ITGB1BP2 ENSDARG00000030176 2472 2.439 - 0.756 - - - - 0.773 0.910 - integrin subunit beta 1 binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6154]
10. ache ENSDARG00000031796 1985 2.431 0.789 0.816 - - - - 0.826 - - acetylcholinesterase [Source:ZFIN;Acc:ZDB-GENE-010906-1]
11. EEF1E1 ENSDARG00000071774 3806 2.41 - 0.814 - - - 0.779 0.817 - - eukaryotic translation elongation factor 1 epsilon 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4949]
12. atp1a2a ENSDARG00000010472, ENSDARG00000111818, ENSDARG00000115733 6341 2.405 - 0.841 - 0.730 - - 0.834 - - ATPase Na+/K+ transporting subunit alpha 2 [Source:ZFIN;Acc:ZDB-GENE-001212-6]
13. CRAT CRAT 521 2.397 - 0.718 - - - - 0.791 0.888 -
14. tns1 tns1 5891 2.345 - 0.740 - - - 0.890 0.715 - -
15. eno3 ENSDARG00000039007 11355 2.342 - 0.832 0.722 - - - 0.788 - - enolase 3, (beta, muscle) [Source:ZFIN;Acc:ZDB-GENE-031006-5]
16. srpk3 ENSDARG00000005916 1546 2.339 - 0.750 - - - 0.842 0.747 - - SRSF protein kinase 3 [Source:ZFIN;Acc:ZDB-GENE-101025-2]
17. cilp ENSDARG00000053362 1429 2.336 - 0.704 - - - - 0.781 0.851 - cartilage intermediate layer protein, nucleotide pyrophosphohydrolase [Source:ZFIN;Acc:ZDB-GENE-050208-76]
18. fgf6a ENSDARG00000009351 799 2.331 - 0.789 - - - 0.804 0.738 - - fibroblast growth factor 6a [Source:ZFIN;Acc:ZDB-GENE-980526-559]
19. mef2aa ENSDARG00000031756 2699 2.325 0.733 0.798 - - - - 0.794 - - myocyte enhancer factor 2aa [Source:ZFIN;Acc:ZDB-GENE-990415-163]
20. TSPAN4 TSPAN4 941 2.318 - 0.711 - - - 0.786 - 0.821 -
21. zgc:153662 zgc:153662 4604 2.283 - 0.728 - - - - 0.775 0.780 -
22. zbtb46 ENSDARG00000078191, ENSDARG00000113888 231 1.867 - - - - - 0.941 - 0.926 - zinc finger and BTB domain containing 46 [Source:ZFIN;Acc:ZDB-GENE-090313-352]
23. CACHD1 ENSDARG00000061590 1287 1.829 - - - - - 0.914 - 0.915 - cache domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-100819-3]
24. elp3 ENSDARG00000042005 936 1.821 - - - - - 0.909 - 0.912 - elongator acetyltransferase complex subunit 3 [Source:ZFIN;Acc:ZDB-GENE-050327-35]
25. sh3d19_1 ENSDARG00000088202, ENSDARG00000114126, ENSDARG00000117115 90 1.819 0.874 - - - - 0.945 - - - SH3 domain containing 19 [Source:ZFIN;Acc:ZDB-GENE-050522-481]
26. slc9a6a ENSDARG00000009209, ENSDARG00000111329 184 1.806 0.860 - - - - 0.946 - - - solute carrier family 9, subfamily A (NHE6, cation proton antiporter 6), member 6a [Source:ZFIN;Acc:ZDB-GENE-070424-104]
27. tmem47 ENSDARG00000057322 4691 1.794 - 0.912 - - - - 0.882 - - transmembrane protein 47 [Source:ZFIN;Acc:ZDB-GENE-040426-2644]
28. smim8 ENSDARG00000071040 622 1.794 0.850 - - - - 0.944 - - - small integral membrane protein 8 [Source:ZFIN;Acc:ZDB-GENE-050522-423]
29. PRSS23 ENSDARG00000055786 564 1.787 0.880 - - - - 0.907 - - - serine protease 23 [Source:ZFIN;Acc:ZDB-GENE-030131-9149]
30. si:dkey-58f10.12 ENSDARG00000092680 258 1.78 0.874 - - - - - - 0.906 - si:dkey-58f10.12 [Source:ZFIN;Acc:ZDB-GENE-060526-314]
31. ryr3 ENSDARG00000071331 6795 1.776 - 0.869 - - - - 0.907 - - ryanodine receptor 3 [Source:ZFIN;Acc:ZDB-GENE-041001-165]
32. PTPLA PTPLA 4044 1.769 - 0.880 - - - - 0.889 - -
33. ntmt1 ENSDARG00000022399 5779 1.768 - 0.901 - - - - 0.867 - - N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2055]
34. STIM2 STIM2 644 1.767 - - - - - - 0.834 0.933 -
35. ryr1b ENSDARG00000023797 5693 1.764 - 0.875 - - - - 0.889 - - ryanodine receptor 1b (skeletal) [Source:ZFIN;Acc:ZDB-GENE-070705-417]
36. suz12b ENSDARG00000098924, ENSDARG00000114239, ENSDARG00000114524 1947 1.756 0.848 - - - - 0.908 - - - SUZ12, polycomb repressive complex 2 subunit b [Source:ZFIN;Acc:ZDB-GENE-030131-3255]
37. dbnla ENSDARG00000008170 2129 1.753 - - - - - 0.906 - 0.847 - drebrin-like a [Source:ZFIN;Acc:ZDB-GENE-040704-42]
38. ck2b ck2b 781 1.753 0.887 - - - - 0.866 - - -
39. myhc4 ENSDARG00000035438 1322 1.747 - 0.821 - - - - 0.926 - - myosin heavy chain 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6206]
40. optc ENSDARG00000014358 1295 1.746 - 0.818 - - - 0.928 - - - opticin [Source:ZFIN;Acc:ZDB-GENE-030131-1798]
41. C13H10orf71 3489 1.74 - 0.870 - - - - 0.870 - - chromosome 13 C10orf71 homolog
42. hapln1a ENSDARG00000089769 12334 1.738 - 0.873 - - - - 0.865 - - hyaluronan and proteoglycan link protein 1a [Source:ZFIN;Acc:ZDB-GENE-050302-175]
43. hhatla ENSDARG00000039051 6598 1.736 - 0.870 - - - - 0.866 - - hedgehog acyltransferase like, a [Source:ZFIN;Acc:ZDB-GENE-040426-1865]
44. six1b ENSDARG00000026473 1908 1.735 - 0.851 - - - - 0.884 - - SIX homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2308]
45. pbxip1a ENSDARG00000071015 4960 1.733 - 0.858 - - - - 0.875 - - pre-B-cell leukemia homeobox interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-060503-871]
46. TRIP10 TRIP10 1079 1.733 - - - - - 0.857 - 0.876 -
47. nmrk2 ENSDARG00000067848 10293 1.729 - 0.827 - - - - 0.902 - - nicotinamide riboside kinase 2 [Source:ZFIN;Acc:ZDB-GENE-040912-44]
48. usp28 ENSDARG00000008880 1850 1.725 - 0.851 - - - - 0.874 - - ubiquitin specific peptidase 28 [Source:ZFIN;Acc:ZDB-GENE-041008-142]
49. me3 ENSDARG00000002305 3305 1.724 0.871 - - - - 0.853 - - - malic enzyme 3, NADP(+)-dependent, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-041111-294]
50. oafa ENSDARG00000075851 2015 1.723 - - - - - 0.927 - 0.796 - OAF homolog a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-090917-1]
51. MYOT ENSDARG00000076312 1791 1.723 - 0.845 - - - - 0.878 - - myotilin [Source:ZFIN;Acc:ZDB-GENE-110411-129]
52. si:dkey-181m9.5 si:dkey-181m9.5 1079 1.72 - - - - - 0.809 0.911 - -
53. EHBP1L1 EHBP1L1 2500 1.718 - 0.843 - - - - 0.875 - -
54. dvl2 ENSDARG00000056184 1525 1.718 0.846 - - - - 0.872 - - - dishevelled segment polarity protein 2 [Source:ZFIN;Acc:ZDB-GENE-041118-20]
55. tnnc1b ENSDARG00000037539 13945 1.714 - 0.858 - - - - 0.856 - - troponin C type 1b (slow) [Source:ZFIN;Acc:ZDB-GENE-040625-62]
56. RECQL4 ENSDARG00000077516 462 1.713 - - - - - 0.949 0.764 - - RecQ helicase-like 4 [Source:ZFIN;Acc:ZDB-GENE-091112-2]
57. znf106a ENSDARG00000016651 6049 1.713 - 0.827 - - - - 0.886 - - zinc finger protein 106a [Source:ZFIN;Acc:ZDB-GENE-040718-21]
58. chrnd ENSDARG00000019342 2728 1.711 - 0.818 - - - - 0.893 - - cholinergic receptor, nicotinic, delta (muscle) [Source:ZFIN;Acc:ZDB-GENE-030131-6665]
59. chrna1 ENSDARG00000009021 2931 1.709 - 0.849 - - - - 0.860 - - cholinergic receptor, nicotinic, alpha 1 (muscle) [Source:ZFIN;Acc:ZDB-GENE-980526-137]
60. usp5_1 ENSDARG00000014517, ENSDARG00000114598 5050 1.708 - 0.830 - - - - 0.878 - - ubiquitin specific peptidase 5 (isopeptidase T) [Source:ZFIN;Acc:ZDB-GENE-040426-2584]
61. wwp2 ENSDARG00000061345 3459 1.706 0.889 - - - - - - 0.817 - WW domain containing E3 ubiquitin protein ligase 2 [Source:ZFIN;Acc:ZDB-GENE-000607-82]
62. gpx7 ENSDARG00000091511 3045 1.706 0.865 - - - - 0.841 - - - glutathione peroxidase 7 [Source:ZFIN;Acc:ZDB-GENE-050522-419]
63. mybphb ENSDARG00000003081 5208 1.705 - 0.874 - - - - 0.831 - - myosin binding protein Hb [Source:ZFIN;Acc:ZDB-GENE-030131-9794]
64. tnw 16679 1.705 - 0.800 - - - - 0.905 - - tenascin W, transcript variant X2
65. dlk2 ENSDARG00000076247 387 1.705 0.907 - - - - - 0.798 - - delta-like 2 homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-081107-4]
66. hspb11 ENSDARG00000002204 879 1.705 - 0.814 - - - - 0.891 - - heat shock protein, alpha-crystallin-related, b11 [Source:ZFIN;Acc:ZDB-GENE-030131-5148]
67. txlnbb ENSDARG00000076241 6396 1.704 - 0.843 - - - - 0.861 - - taxilin beta b [Source:ZFIN;Acc:ZDB-GENE-070424-77]
68. tusc2a ENSDARG00000099817 560 1.699 0.886 - - - - - 0.813 - - tumor suppressor 2, mitochondrial calcium regulator a [Source:ZFIN;Acc:ZDB-GENE-061013-612]
69. mybpc2b ENSDARG00000021265 9618 1.699 - 0.860 - - - - 0.839 - - myosin binding protein C, fast type b [Source:ZFIN;Acc:ZDB-GENE-050320-80]
70. srl ENSDARG00000104587 11126 1.698 - 0.818 - - - - 0.880 - - sarcalumenin [Source:ZFIN;Acc:ZDB-GENE-061110-91]
71. FRMD5 ENSDARG00000075942 569 1.695 - 0.780 - - - - 0.915 - - FERM domain containing 5 [Source:HGNC Symbol;Acc:HGNC:28214]
72. CCK CCK 1826 1.694 - - - - - 0.890 0.804 - -
73. rspry1 ENSDARG00000062558 1424 1.694 0.869 - - - - - - 0.825 - ring finger and SPRY domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-061026-2]
74. asb8 ENSDARG00000003383 733 1.692 - 0.827 - - - - - 0.865 - ankyrin repeat and SOCS box containing 8 [Source:ZFIN;Acc:ZDB-GENE-030131-5411]
75. atp6v0a2b ENSDARG00000035565, ENSDARG00000113695 785 1.691 0.830 - - - - - - 0.861 - ATPase H+ transporting V0 subunit a2b [Source:ZFIN;Acc:ZDB-GENE-060526-4]
76. pip5k1ab ENSDARG00000024642 1988 1.689 - 0.759 - - - 0.930 - - - phosphatidylinositol-4-phosphate 5-kinase, type I, alpha, b [Source:ZFIN;Acc:ZDB-GENE-041111-123]
77. thbs3a ENSDARG00000077641 631 1.688 - - - - - 0.923 0.765 - - thrombospondin 3a [Source:ZFIN;Acc:ZDB-GENE-020708-3]
78. dchs1b ENSDARG00000079850 831 1.688 - 0.769 - - - 0.919 - - - dachsous cadherin-related 1b [Source:ZFIN;Acc:ZDB-GENE-050208-41]
79. MYOM3 2720 1.688 - 0.869 - - - - 0.819 - - myomesin 3, transcript variant X2
80. prx ENSDARG00000017246 6183 1.686 - 0.759 - - - - 0.927 - - periaxin [Source:ZFIN;Acc:ZDB-GENE-030131-5790]
81. fkbp1b ENSDARG00000052625 883 1.685 - - - - - - 0.892 0.793 - FK506 binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1785]
82. gpr143 ENSDARG00000034572 559 1.684 - - - - - 0.878 - 0.806 - G protein-coupled receptor 143 [Source:ZFIN;Acc:ZDB-GENE-040426-1476]
83. zgc:158296 ENSDARG00000070923 3935 1.684 - 0.848 - - - - 0.836 - - zgc:158296 [Source:ZFIN;Acc:ZDB-GENE-070112-1272]
84. NEURL2 ENSDARG00000062446, ENSDARG00000110488 483 1.684 - 0.734 - - - 0.950 - - - neuralized E3 ubiquitin protein ligase 2 [Source:ZFIN;Acc:ZDB-GENE-070410-31]
85. sh3bgr ENSDARG00000021633 3498 1.683 - 0.811 - - - - 0.872 - - SH3 domain binding glutamate-rich protein [Source:ZFIN;Acc:ZDB-GENE-040801-27]
86. trdn ENSDARG00000041779 4283 1.68 - 0.769 - - - - 0.911 - - triadin [Source:ZFIN;Acc:ZDB-GENE-041014-193]
87. DNAJA4 ENSDARG00000051762 5657 1.68 - 0.813 - - - - 0.867 - - DnaJ heat shock protein family (Hsp40) member A4 [Source:HGNC Symbol;Acc:HGNC:14885]
88. fbp2 ENSDARG00000012366 1042 1.677 - 0.825 - - - - 0.852 - - fructose-1,6-bisphosphatase 2 [Source:ZFIN;Acc:ZDB-GENE-040822-23]
89. pygma ENSDARG00000055518 15972 1.676 - 0.847 - - - - 0.829 - - phosphorylase, glycogen, muscle A [Source:ZFIN;Acc:ZDB-GENE-050522-482]
90. rgmd ENSDARG00000034013, ENSDARG00000111872 4752 1.676 - 0.841 - - - - 0.835 - - RGM domain family, member D [Source:ZFIN;Acc:ZDB-GENE-030131-561]
91. btbd9 ENSDARG00000068983 356 1.674 - - - - - 0.952 0.722 - - BTB (POZ) domain containing 9 [Source:ZFIN;Acc:ZDB-GENE-040704-39]
92. ywhag2 ENSDARG00000071658, ENSDARG00000116741 3326 1.674 - 0.827 - - - - 0.847 - - 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-061023-2]
93. ADAMTSL4 ENSDARG00000063407 1045 1.673 - 0.732 - - - 0.941 - - - ADAMTS like 4 [Source:HGNC Symbol;Acc:HGNC:19706]
94. kif26aa ENSDARG00000042368 674 1.673 - 0.740 - - - - - 0.933 - kinesin family member 26Aa [Source:ZFIN;Acc:ZDB-GENE-041001-148]
95. sptb ENSDARG00000030490 7128 1.671 - 0.802 - - - - 0.869 - - spectrin, beta, erythrocytic [Source:ZFIN;Acc:ZDB-GENE-000906-1]
96. TMPO TMPO 3264 1.669 - 0.825 - - - - 0.844 - -
97. sfrp2 ENSDARG00000070050, ENSDARG00000114620 1681 1.669 - 0.829 - - - - 0.840 - - secreted frizzled-related protein 2 [Source:ZFIN;Acc:ZDB-GENE-061013-293]
98. fitm1 ENSDARG00000056464 1759 1.668 - 0.807 - - - - 0.861 - - fat storage-inducing transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-050306-28]
99. BX927282.2 ENSDARG00000096925 221 1.667 - 0.763 - - - - - 0.904 -
100. cacnb1 ENSDARG00000002167 1402 1.667 - 0.812 - - - - 0.855 - - calcium channel, voltage-dependent, beta 1 subunit [Source:ZFIN;Acc:ZDB-GENE-040718-399]

There are 2184 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA