Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for trim3a

Gene Name Gene ID Reads Annotation
trim3a ENSDARG00000063711 44 tripartite motif containing 3a [Source:ZFIN;Acc:ZDB-GENE-080522-4]










Genes with expression patterns similar to trim3a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. trim3a ENSDARG00000063711 44 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 tripartite motif containing 3a [Source:ZFIN;Acc:ZDB-GENE-080522-4]
2. zfp64 ENSDARG00000061147 44 2.713 0.939 - - - - 0.774 1.000 - - zinc finger protein 64 homolog (mouse) [Source:ZFIN;Acc:ZDB-GENE-031118-80]
3. CABZ01028287.1 CABZ01028287.1 626 2.329 0.845 - - 0.743 - - 0.741 - -
4. ENTHD1 ENTHD1 235 2.319 0.812 0.770 - - - - 0.737 - -
5. rbp1b rbp1b 36 2.281 0.823 - - - - 0.742 - 0.716 -
6. ccdc153 ENSDARG00000077161 93 2.256 0.737 - - 0.801 - 0.718 - - - coiled-coil domain containing 153 [Source:ZFIN;Acc:ZDB-GENE-080204-16]
7. JAKMIP1 ENSDARG00000076090 55 2.246 0.799 - - - - 0.742 0.705 - - janus kinase and microtubule interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-110208-7]
8. slc25a3a ENSDARG00000027424 11 1.982 - - - 0.982 - - 1.000 - - solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3a [Source:ZFIN;Acc:ZDB-GENE-040426-1673]
9. kif3cb ENSDARG00000079500 935 1.939 0.939 - - - - - 1.000 - - kinesin family member 3Cb [Source:ZFIN;Acc:ZDB-GENE-080709-4]
10. CR391967.1 CR391967.1 135 1.896 0.896 - - - - - 1.000 - -
11. TMEM100_1 TMEM100_1 44 1.887 0.939 - - - - - 0.948 - -
12. tbr1a ENSDARG00000076259 341 1.875 - - - 0.875 - - 1.000 - - T-box, brain, 1a [Source:ZFIN;Acc:ZDB-GENE-060810-93]
13. gaa ENSDARG00000090714 19 1.867 - - - - - 0.867 1.000 - - glucosidase, alpha; acid (Pompe disease, glycogen storage disease type II) [Source:ZFIN;Acc:ZDB-GENE-070212-2]
14. zgc:114081 ENSDARG00000057899, ENSDARG00000113048 5 1.845 0.939 0.906 - - - - - - - zgc:114081 [Source:ZFIN;Acc:ZDB-GENE-050913-78]
15. nog2 ENSDARG00000043066 233 1.845 0.939 0.906 - - - - - - - noggin 2 [Source:ZFIN;Acc:ZDB-GENE-991206-14]
16. lrrc48 lrrc48 50 1.823 - 0.823 - - - - 1.000 - -
17. CABZ01015475.1 ENSDARG00000104841 6 1.823 - 0.823 - - - - 1.000 - - jumonji domain containing 8 [Source:NCBI gene;Acc:100330060]
18. si:dkey-258p11.1 si:dkey-258p11.1 48 1.822 0.822 - - - - - 1.000 - -
19. arf3a ENSDARG00000070539 29 1.816 0.939 - - 0.877 - - - - - ADP-ribosylation factor 3a [Source:ZFIN;Acc:ZDB-GENE-040801-176]
20. ZDHHC12 ZDHHC12 29 1.811 - 0.906 - 0.905 - - - - -
21. si:ch73-91k6.8 si:ch73-91k6.8 37 1.787 0.937 - - - - - 0.850 - -
22. nek8 ENSDARG00000045626, ENSDARG00000117017 67 1.779 - 1.000 - - - - 0.779 - - NIMA-related kinase 8 [Source:ZFIN;Acc:ZDB-GENE-020509-1]
23. si:ch211-57m13.9 ENSDARG00000095884 10 1.776 0.776 - - - - - 1.000 - - si:ch211-57m13.9 [Source:ZFIN;Acc:ZDB-GENE-110411-61]
24. TRIM46 TRIM46 73 1.775 0.939 - - - - - 0.836 - -
25. hapln4 ENSDARG00000018542 10 1.76 - - - 0.760 - - 1.000 - - hyaluronan and proteoglycan link protein 4 [Source:ZFIN;Acc:ZDB-GENE-060503-243]
26. si:ch211-113a14.18 ENSDARG00000051735 1253 1.749 0.749 - - - - - 1.000 - - si:ch211-113a14.18 [Source:ZFIN;Acc:ZDB-GENE-121214-116]
27. sh3gl1b ENSDARG00000002642, ENSDARG00000113208 61 1.748 0.817 0.931 - - - - - - - SH3-domain GRB2-like 1b [Source:ZFIN;Acc:ZDB-GENE-031001-6]
28. si:ch211-117c9.5 ENSDARG00000071235 154 1.746 0.798 - - - - - 0.948 - - si:ch211-117c9.5 [Source:ZFIN;Acc:ZDB-GENE-110408-2]
29. ccdc28b ENSDARG00000011222 528 1.745 0.856 0.889 - - - - - - - coiled-coil domain containing 28B [Source:ZFIN;Acc:ZDB-GENE-060208-3]
30. BX005294.2 ENSDARG00000109361 3 1.742 - - - - - 0.742 1.000 - -
31. CR388042.1 ENSDARG00000106267 18 1.737 - 0.827 - - - - 0.910 - -
32. sez6l ENSDARG00000100594 35 1.734 - - - - - 0.734 1.000 - - seizure related 6 homolog (mouse)-like [Source:ZFIN;Acc:ZDB-GENE-091204-162]
33. s100b ENSDARG00000057598 41 1.728 - 0.836 - - - - 0.892 - - S100 calcium binding protein, beta (neural) [Source:ZFIN;Acc:ZDB-GENE-040718-290]
34. nfatc1 ENSDARG00000036168 16 1.711 - 0.711 - - - - 1.000 - - nuclear factor of activated T cells 1 [Source:ZFIN;Acc:ZDB-GENE-060503-677]
35. NF1 NF1 62 1.708 - 0.757 - - - - 0.951 - -
36. map6 map6 70 1.707 0.939 - - - - - 0.768 - -
37. si:ch211-71k14.1 ENSDARG00000087061 48 1.704 - - - - - - 1.000 - 0.704 si:ch211-71k14.1 [Source:ZFIN;Acc:ZDB-GENE-110411-283]
38. nrsn1 ENSDARG00000111235 123 1.699 0.944 - - - - - 0.755 - - neurensin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7491]
39. bbs12 ENSDARG00000016112 38 1.686 - 0.829 - - - 0.857 - - - Bardet-Biedl syndrome 12 [Source:ZFIN;Acc:ZDB-GENE-070626-3]
40. ncanb ENSDARG00000005783 22 1.681 0.939 - - - - 0.742 - - - neurocan b [Source:ZFIN;Acc:ZDB-GENE-050208-586]
41. chrm2a ENSDARG00000098612 5 1.681 0.939 - - - - 0.742 - - - cholinergic receptor, muscarinic 2a [Source:ZFIN;Acc:ZDB-GENE-030314-1]
42. SLC2A13 SLC2A13 74 1.662 0.939 - - - - - 0.723 - -
43. C11H1orf116 C11H1orf116 9 1.658 - 0.882 - 0.776 - - - - -
44. FAM163A_1 ENSDARG00000093021 6 1.649 - 0.906 - - - - - 0.743 - family with sequence similarity 163 member A [Source:HGNC Symbol;Acc:HGNC:28274]
45. skor1a ENSDARG00000069030 19 1.648 - 0.906 - - - 0.742 - - - SKI family transcriptional corepressor 1a [Source:ZFIN;Acc:ZDB-GENE-080722-5]
46. 5S_rRNA_15 5S_rRNA_15 9 1.648 - 0.906 - - - 0.742 - - -
47. THEM6 ENSDARG00000103914 49 1.648 - 0.826 - - - - 0.822 - - thioesterase superfamily member 6 [Source:HGNC Symbol;Acc:HGNC:29656]
48. nlgn2b ENSDARG00000079251, ENSDARG00000111576 179 1.641 0.788 - - - - - 0.853 - - neuroligin 2b [Source:ZFIN;Acc:ZDB-GENE-090918-3]
49. zgc:162402 zgc:162402 298 1.638 - - - 0.821 - - 0.817 - -
50. LRFN5_1 LRFN5_1 96 1.627 0.893 - - - - - 0.734 - -
51. HIST1H4J_2 HIST1H4J_2 12 1.619 - - - 0.899 - - - - 0.720
52. lrp2a ENSDARG00000102506 212 1.611 0.728 - - - - - 0.883 - - low density lipoprotein receptor-related protein 2a [Source:ZFIN;Acc:ZDB-GENE-050119-2]
53. KLHDC3 ENSDARG00000102772 14 1.608 - 0.906 - - - - - 0.702 - kelch domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2426]
54. agbl4 ENSDARG00000068050, ENSDARG00000110838 201 1.602 0.870 - - - - - 0.732 - - ATP/GTP binding protein-like 4 [Source:ZFIN;Acc:ZDB-GENE-081104-437]
55. ANO8 ANO8 380 1.597 0.701 - - - - - 0.896 - -
56. BX927369.3 BX927369.3 5 1.593 - - - - - - 0.850 0.743 -
57. tfpi2 ENSDARG00000061351, ENSDARG00000115583 61 1.589 0.753 - - - - - 0.836 - - tissue factor pathway inhibitor 2 [Source:ZFIN;Acc:ZDB-GENE-060503-38]
58. zgc:100906 ENSDARG00000033599 344 1.587 0.819 - - - - - 0.768 - - zgc:100906 [Source:ZFIN;Acc:ZDB-GENE-040801-20]
59. prdm13 ENSDARG00000078701 205 1.579 0.743 - - - - - 0.836 - - PR domain containing 13 [Source:ZFIN;Acc:ZDB-GENE-080616-1]
60. BRINP3 BRINP3 11 1.578 - - - - - 0.742 0.836 - -
61. crygm2d14 ENSDARG00000087301 66 1.557 - - - 0.815 - 0.742 - - - crystallin, gamma M2d14 [Source:ZFIN;Acc:ZDB-GENE-070822-20]
62. gucy2f ENSDARG00000025504 6 1.556 - - - 0.836 - - - - 0.720 guanylate cyclase 2F, retinal [Source:ZFIN;Acc:ZDB-GENE-011128-7]
63. grin2ca ENSDARG00000078149 13 1.54 - - - - - 0.742 0.798 - - glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca [Source:ZFIN;Acc:ZDB-GENE-070822-3]
64. fat3a ENSDARG00000033840 902 1.503 0.726 - - - - - 0.777 - - FAT atypical cadherin 3a [Source:ZFIN;Acc:ZDB-GENE-060929-1254]
65. wdr32 ENSDARG00000029600, ENSDARG00000110405 607 1.499 - 0.795 - - - - 0.704 - - WD repeat domain 32 [Source:ZFIN;Acc:ZDB-GENE-040426-2314]
66. PRKCA_1 ENSDARG00000099841 12 1.483 - - - 0.741 - 0.742 - - - protein kinase C alpha [Source:HGNC Symbol;Acc:HGNC:9393]
67. U4atac U4atac 47 1.467 - 0.754 - - - - - - 0.713
68. porcnl ENSDARG00000052455 29 1.462 - - - - - 0.742 - - 0.720 porcupine O-acyltransferase like [Source:ZFIN;Acc:ZDB-GENE-030131-5931]
69. cuedc1a ENSDARG00000068716 232 1.456 - - - - - 0.733 0.723 - - CUE domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-061027-344]
70. nmu ENSDARG00000043299 67 1.449 - - - - 0.707 0.742 - - - neuromedin U [Source:ZFIN;Acc:ZDB-GENE-041001-111]
71. PRPF6 ENSDARG00000091367 48 1 - - - - - - 1.000 - - PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-2575]
72. si:ch211-223a21.3 ENSDARG00000104737 28 1 - - - - - - 1.000 - - si:ch211-223a21.3 [Source:ZFIN;Acc:ZDB-GENE-110913-50]
73. si:dkey-157e10.7 si:dkey-157e10.7 105 1 - 1.000 - - - - - - -
74. cart4 ENSDARG00000070142 55 1 - - - - - - 1.000 - - cocaine- and amphetamine-regulated transcript 4 [Source:ZFIN;Acc:ZDB-GENE-060503-863]
75. wu:fe38f03 wu:fe38f03 22 1 - - - - - - 1.000 - -
76. BX936443.2 BX936443.2 28 1 - - - - - - 1.000 - -
77. cyp3c4 ENSDARG00000070021 95 1 - - - - - - 1.000 - - cytochrome P450, family 3, subfamily C, polypeptide 4 [Source:ZFIN;Acc:ZDB-GENE-060929-96]
78. hmgcra ENSDARG00000052734, ENSDARG00000109336 45 1 - - - - - - 1.000 - - 3-hydroxy-3-methylglutaryl-CoA reductase a [Source:ZFIN;Acc:ZDB-GENE-040401-2]
79. fzd8b ENSDARG00000038569, ENSDARG00000110687 52 1 - - - - - - 1.000 - - frizzled class receptor 8b [Source:ZFIN;Acc:ZDB-GENE-000328-4]
80. si:ch211-198c19.3 ENSDARG00000095533 5 1 - - - - - - 1.000 - - si:ch211-198c19.3 [Source:ZFIN;Acc:ZDB-GENE-100922-226]
81. CABZ01036418.1 CABZ01036418.1 0 1 - - - - - - 1.000 - -
82. zdhhc18a ENSDARG00000069807 8 1 - - - - - - 1.000 - - zinc finger, DHHC-type containing 18a [Source:ZFIN;Acc:ZDB-GENE-060929-424]
83. clock clock 32 1 - - - - - - 1.000 - -
84. si:dkey-235h8.1 si:dkey-235h8.1 2457 1 - - - - - - 1.000 - -
85. CAPG CAPG 17 1 - - - - - - 1.000 - -
86. si:ch211-281p14.2 22 1 - - - - - - 1.000 - - si:ch211-281p14.2, transcript variant X2
87. prl ENSDARG00000037946 80 1 - - - - - - 1.000 - - prolactin [Source:ZFIN;Acc:ZDB-GENE-030513-1]
88. fabp7b ENSDARG00000034650 397 1 - - - - - - 1.000 - - fatty acid binding protein 7, brain, b [Source:ZFIN;Acc:ZDB-GENE-040614-4]
89. CABZ01089980.1 ENSDARG00000117446 16 1 - - - - - - 1.000 - -
90. pm20d1.1 ENSDARG00000037551 11 1 - - - - - - 1.000 - - peptidase M20 domain containing 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-051120-102]
91. drd2a ENSDARG00000056926 40 1 - - - - - - 1.000 - - dopamine receptor D2a [Source:ZFIN;Acc:ZDB-GENE-021119-2]
92. si:ch211-113a14.26_2 0 1 - - - - - - 1.000 - - si:ch211-113a14.26
93. eomesa ENSDARG00000006640 257 1 - - - - - - 1.000 - - eomesodermin homolog a [Source:ZFIN;Acc:ZDB-GENE-001228-1]
94. si:dkeyp-104f11.5 si:dkeyp-104f11.5 30 1 - - - - - - 1.000 - -
95. MEX3D MEX3D 293 1 - - - - - - 1.000 - -
96. CMA1_4 CMA1_4 23 1 - - - - - - 1.000 - -
97. nkx1.2la ENSDARG00000006350 76 1 - - - - - - 1.000 - - NK1 transcription factor related 2-like,a [Source:ZFIN;Acc:ZDB-GENE-040615-1]
98. hnf1a ENSDARG00000009470 60 1 - 1.000 - - - - - - - HNF1 homeobox a [Source:ZFIN;Acc:ZDB-GENE-021206-12]
99. zgc:174224 ENSDARG00000093875 4 1 - - - - - - 1.000 - - zgc:174224 [Source:ZFIN;Acc:ZDB-GENE-071004-118]
100. CU481774.2 CU481774.2 1 1 - - - - - - 1.000 - -

There are 1298 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA