Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for traf1

Gene Name Gene ID Reads Annotation
traf1 ENSDARG00000069482 50 TNF receptor-associated factor 1 [Source:ZFIN;Acc:ZDB-GENE-071120-4]










Genes with expression patterns similar to traf1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. traf1 ENSDARG00000069482 50 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 TNF receptor-associated factor 1 [Source:ZFIN;Acc:ZDB-GENE-071120-4]
2. si:ch211-237l4.6 ENSDARG00000056915 49 2.855 - 1.000 - - - - 0.914 0.941 - si:ch211-237l4.6 [Source:ZFIN;Acc:ZDB-GENE-040724-42]
3. hsp70l_1 ENSDARG00000055723 72 2.575 0.825 1.000 - - - - 0.750 - - heat shock cognate 70-kd protein, like [Source:ZFIN;Acc:ZDB-GENE-050321-1]
4. sc:d217 ENSDARG00000079645 32 2.434 0.809 0.875 - - - 0.750 - - - sc:d217 [Source:ZFIN;Acc:ZDB-GENE-080303-15]
5. mtus2 mtus2 22 2 - 1.000 - - - - 1.000 - -
6. MFAP4_7 MFAP4_7 43 2 - 1.000 - - - 1.000 - - -
7. smad6b ENSDARG00000031763 12 2 1.000 - - - - - 1.000 - - SMAD family member 6b [Source:ZFIN;Acc:ZDB-GENE-050419-198]
8. ucn3l ENSDARG00000087241 29 2 1.000 - - - - - 1.000 - - urocortin 3, like [Source:ZFIN;Acc:ZDB-GENE-060130-250]
9. si:dkeyp-66a7.1 si:dkeyp-66a7.1 6 2 1.000 1.000 - - - - - - -
10. mcm5_1 ENSDARG00000019507 10 2 1.000 1.000 - - - - - - - minichromosome maintenance complex component 5 [Source:ZFIN;Acc:ZDB-GENE-021209-1]
11. si:ch211-120c15.1 si:ch211-120c15.1 20 2 1.000 1.000 - - - - - - -
12. si:ch211-188i4.4 5 2 1.000 1.000 - - - - - - - si:ch211-188i4.4, transcript variant X3
13. urgcp ENSDARG00000036767 6 2 - 1.000 - - - - 1.000 - - upregulator of cell proliferation [Source:ZFIN;Acc:ZDB-GENE-120215-160]
14. si:ch211-157l15.4 si:ch211-157l15.4 92 2 - 1.000 - - - 1.000 - - -
15. zgc:152670 ENSDARG00000017038, ENSDARG00000117151 587 2 - - - - - 1.000 1.000 - - zgc:152670 [Source:ZFIN;Acc:ZDB-GENE-060929-954]
16. PCDH10 PCDH10 7 2 - 1.000 - - - - 1.000 - -
17. si:ch211-199m9.2 si:ch211-199m9.2 9 2 - 1.000 - - - - 1.000 - -
18. lama3 ENSDARG00000071462 1 2 - 1.000 - - - 1.000 - - - laminin, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-050208-475]
19. phf21aa ENSDARG00000006878 31 2 - 1.000 - - - - 1.000 - - PHD finger protein 21Aa [Source:ZFIN;Acc:ZDB-GENE-050208-99]
20. si:dkeyp-82h4.1 ENSDARG00000096463 18 2 1.000 1.000 - - - - - - - si:dkeyp-82h4.1 [Source:ZFIN;Acc:ZDB-GENE-120709-49]
21. BX511021.2 ENSDARG00000097646 5 2 - - - - - 1.000 1.000 - -
22. bmp1b ENSDARG00000028053 25 2 1.000 1.000 - - - - - - - bone morphogenetic protein 1b [Source:ZFIN;Acc:ZDB-GENE-060818-2]
23. zgc:171759_5 ENSDARG00000100259, ENSDARG00000109737, ENSDARG00000111964, ENSDARG00000114195, ENSDARG00000115938 274 2 1.000 - - - - 1.000 - - - zgc:171759 [Source:ZFIN;Acc:ZDB-GENE-071004-32]
24. rs1 rs1 70 2 1.000 - - - - 1.000 - - -
25. grtp1b ENSDARG00000030269 24 2 - - - - - 1.000 1.000 - - growth hormone regulated TBC protein 1b [Source:ZFIN;Acc:ZDB-GENE-050417-346]
26. ABHD12B_1 ABHD12B_1 57 1.976 - 1.000 - - - - 0.976 - -
27. GMIP ENSDARG00000077249 43 1.951 1.000 - - - - 0.951 - - - GEM interacting protein [Source:ZFIN;Acc:ZDB-GENE-130530-823]
28. rdh14a ENSDARG00000039299 79 1.938 1.000 - - - - - 0.938 - - retinol dehydrogenase 14a [Source:ZFIN;Acc:ZDB-GENE-041010-124]
29. NFATC4 ENSDARG00000054162 44 1.933 - 1.000 - - - - 0.933 - - nuclear factor of activated T cells 4 [Source:ZFIN;Acc:ZDB-GENE-070912-659]
30. sergef ENSDARG00000070986, ENSDARG00000111782 48 1.924 - 1.000 - - - - 0.924 - - secretion regulating guanine nucleotide exchange factor [Source:ZFIN;Acc:ZDB-GENE-061220-11]
31. si:dkey-46g23.2 ENSDARG00000115817 11 1.904 - - - - - 1.000 0.904 - - si:dkey-46g23.2 [Source:ZFIN;Acc:ZDB-GENE-070705-476]
32. ca10b ENSDARG00000009568 8 1.904 - 1.000 - - - - 0.904 - - carbonic anhydrase Xb [Source:ZFIN;Acc:ZDB-GENE-080815-2]
33. b3gat3 ENSDARG00000001939 58 1.881 0.881 - - - - - 1.000 - - beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I) [Source:ZFIN;Acc:ZDB-GENE-020419-3]
34. si:ch211-283g2.2 ENSDARG00000108340, ENSDARG00000108953 59 1.869 - 1.000 - - - - 0.869 - - si:ch211-283g2.2 [Source:ZFIN;Acc:ZDB-GENE-060526-151]
35. wdr17 ENSDARG00000075098 83 1.853 - 1.000 - - - - 0.853 - - WD repeat domain 17 [Source:ZFIN;Acc:ZDB-GENE-090313-131]
36. fscn1b ENSDARG00000037747, ENSDARG00000111370 75 1.852 - 0.852 - - - - 1.000 - - fascin actin-bundling protein 1b [Source:ZFIN;Acc:ZDB-GENE-120507-1]
37. slc13a1 ENSDARG00000045638, ENSDARG00000114835 13 1.841 - 1.000 - - - 0.841 - - - solute carrier family 13 member 1 [Source:ZFIN;Acc:ZDB-GENE-031222-3]
38. CECR6 25 1.838 - - - - - 0.838 1.000 - - cat eye syndrome chromosome region, candidate 6
39. slc15a1a ENSDARG00000100315 23 1.832 - 1.000 - 0.832 - - - - - solute carrier family 15 (oligopeptide transporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-091204-9]
40. dclre1a ENSDARG00000091768 94 1.831 - 1.000 - - - - 0.831 - - DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050522-124]
41. st6galnac ENSDARG00000086292 29 1.825 0.825 - - - - - 1.000 - - ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase [Source:ZFIN;Acc:ZDB-GENE-050309-58]
42. chrna6 ENSDARG00000055559 60 1.825 0.825 1.000 - - - - - - - cholinergic receptor, nicotinic, alpha 6 [Source:ZFIN;Acc:ZDB-GENE-090312-91]
43. CABZ01021538.1 CABZ01021538.1 67 1.824 0.824 1.000 - - - - - - -
44. cd40 ENSDARG00000054968 90 1.815 - - - - - - 0.856 0.959 - CD40 molecule, TNF receptor superfamily member 5 [Source:ZFIN;Acc:ZDB-GENE-090313-95]
45. PLEKHS1_2 PLEKHS1_2 21 1.811 - - 0.811 - - - 1.000 - -
46. rhof ENSDARG00000054389, ENSDARG00000111798 15 1.805 - - 0.805 - - 1.000 - - - ras homolog family member F [Source:ZFIN;Acc:ZDB-GENE-050522-280]
47. si:ch211-59h6.1 ENSDARG00000013022 193 1.8 - - - - - - 0.882 0.918 - si:ch211-59h6.1 [Source:ZFIN;Acc:ZDB-GENE-091204-418]
48. f2rl1.1 ENSDARG00000068856 47 1.798 0.825 - - - - - 0.973 - - coagulation factor II (thrombin) receptor-like 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-061215-140]
49. RNF115 ENSDARG00000062450 83 1.796 - - - - - 0.837 - 0.959 - ring finger protein 115 [Source:ZFIN;Acc:ZDB-GENE-061215-82]
50. calml4a ENSDARG00000075800 14 1.791 - - - - - 1.000 - - 0.791 calmodulin-like 4a [Source:ZFIN;Acc:ZDB-GENE-081022-9]
51. ODF2 ODF2 6 1.784 - 1.000 0.784 - - - - - -
52. macrod1 ENSDARG00000029609 66 1.779 0.779 - - - - 1.000 - - - MACRO domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040912-100]
53. SDSL ENSDARG00000074698 34 1.778 - 1.000 - - - - 0.778 - - serine dehydratase-like [Source:ZFIN;Acc:ZDB-GENE-131121-410]
54. si:dkeyp-59a8.1 si:dkeyp-59a8.1 6 1.774 - 1.000 - - - - - - 0.774
55. BX936386.1 ENSDARG00000097166 5 1.747 - - - - - 1.000 - - 0.747
56. ugt2a6 ENSDARG00000039501 5 1.746 - - 0.746 - - 1.000 - - - UDP glucuronosyltransferase 2 family, polypeptide A6 [Source:ZFIN;Acc:ZDB-GENE-081104-3]
57. trpc6a ENSDARG00000056625, ENSDARG00000111066 4 1.745 - - - - - - 0.954 - 0.791 transient receptor potential cation channel, subfamily C, member 6a [Source:ZFIN;Acc:ZDB-GENE-040724-114]
58. trhra ENSDARG00000076546 3 1.744 1.000 - 0.744 - - - - - - thyrotropin-releasing hormone receptor a [Source:ZFIN;Acc:ZDB-GENE-100922-18]
59. zgc:193801 ENSDARG00000076552 37 1.741 0.809 - - - - - 0.932 - - zgc:193801 [Source:ZFIN;Acc:ZDB-GENE-081022-40]
60. fank1 ENSDARG00000039657 9 1.728 1.000 - - - - - 0.728 - - fibronectin type III and ankyrin repeat domains 1 [Source:ZFIN;Acc:ZDB-GENE-130613-3]
61. olfm1a ENSDARG00000018270 107 1.727 - 1.000 - - - - 0.727 - - olfactomedin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-194]
62. paqr7a ENSDARG00000100462 15 1.725 - - 0.811 - - - 0.914 - - progestin and adipoQ receptor family member VII, a [Source:ZFIN;Acc:ZDB-GENE-070705-346]
63. cx28.9 ENSDARG00000041797 12 1.719 - - - 0.928 - - - - 0.791 connexin 28.9 [Source:ZFIN;Acc:ZDB-GENE-041114-200]
64. uckl1a ENSDARG00000001686 21 1.718 1.000 - 0.718 - - - - - - uridine-cytidine kinase 1-like 1a [Source:ZFIN;Acc:ZDB-GENE-040724-238]
65. CST7 CST7 22 1.709 - - 0.709 - - 1.000 - - -
66. tgm5l ENSDARG00000098837 174 1.708 0.779 - - - - - - 0.929 - transglutaminase 5, like [Source:ZFIN;Acc:ZDB-GENE-110411-176]
67. si:ch211-51n3.1 si:ch211-51n3.1 26 1.706 - - - 0.820 - 0.886 - - -
68. ism2 ism2 153 1.705 - - - - - - 0.869 0.836 -
69. BX321870.1 ENSDARG00000098519 9 1.702 - 1.000 - - 0.702 - - - -
70. si:ch211-141o9.10 ENSDARG00000077900 98 1.694 - 0.844 - - - - - 0.850 - si:ch211-141o9.10 [Source:ZFIN;Acc:ZDB-GENE-130603-5]
71. CD53 CD53 108 1.691 - - 0.830 - - - 0.861 - -
72. g6pc3 ENSDARG00000020371 152 1.683 - - - 0.836 - - 0.847 - - glucose 6 phosphatase, catalytic, 3 [Source:ZFIN;Acc:ZDB-GENE-061215-19]
73. gpr56 gpr56 523 1.674 - 0.823 - - - - - 0.851 -
74. smyd3 ENSDARG00000058050 69 1.673 - - - - - 0.709 - 0.964 - SET and MYND domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-051120-138]
75. TRABD2A ENSDARG00000089701 401 1.665 - - - - - - 0.825 0.840 - TraB domain containing 2A [Source:ZFIN;Acc:ZDB-GENE-030131-4053]
76. cyp27a1.4 ENSDARG00000055159 47 1.65 0.860 - - 0.790 - - - - - cytochrome P450, family 27, subfamily A, polypeptide 1, gene 4 [Source:ZFIN;Acc:ZDB-GENE-030131-1060]
77. ifih1 ENSDARG00000018553 8 1.648 - - - 0.825 - - 0.823 - - interferon induced with helicase C domain 1 [Source:ZFIN;Acc:ZDB-GENE-081104-438]
78. si:ch73-7i4.2 ENSDARG00000093998 154 1.641 0.743 - - 0.898 - - - - - si:ch73-7i4.2 [Source:ZFIN;Acc:ZDB-GENE-060810-137]
79. RAI1 ENSDARG00000076679 59 1.64 - - - 0.921 - - 0.719 - - retinoic acid induced 1 [Source:ZFIN;Acc:ZDB-GENE-101203-2]
80. si:ch73-173m3.3 si:ch73-173m3.3 425 1.623 0.751 0.872 - - - - - - -
81. b3gnt3.2 ENSDARG00000054373 16 1.608 0.874 - - - - - 0.734 - - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3, tendem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-081104-528]
82. fancf ENSDARG00000019250 111 1.607 0.715 - - - - - 0.892 - - FA complementation group F [Source:ZFIN;Acc:ZDB-GENE-060306-3]
83. CR759791.1 ENSDARG00000088591 160 1.603 - - - 0.747 - - 0.856 - - beta-1,3-galactosyltransferase 2-like [Source:NCBI gene;Acc:100537407]
84. si:dkey-197c15.6 ENSDARG00000079401 745 1.587 0.726 - - - - - 0.861 - - si:dkey-197c15.6 [Source:ZFIN;Acc:ZDB-GENE-060810-147]
85. clu ENSDARG00000010434 498 1.579 0.799 - - - - - - 0.780 - clusterin [Source:ZFIN;Acc:ZDB-GENE-040426-1774]
86. si:ch211-203k16.3 ENSDARG00000069305 21 1.562 - - - 0.722 - - 0.840 - - si:ch211-203k16.3 [Source:ZFIN;Acc:ZDB-GENE-041014-290]
87. ropn1l ENSDARG00000058370, ENSDARG00000114122 57 1.554 - 0.723 - 0.831 - - - - - rhophilin associated tail protein 1-like [Source:ZFIN;Acc:ZDB-GENE-040724-235]
88. cldn7a ENSDARG00000036376, ENSDARG00000111721, ENSDARG00000115826 56 1.55 - - - - - 0.733 - 0.817 - claudin 7a [Source:ZFIN;Acc:ZDB-GENE-040718-29]
89. si:dkey-10p5.7 26 1.503 - - - - - 0.709 0.794 - - si:dkey-10p5.7
90. tnmd ENSDARG00000052615 42 1.466 - - 0.765 - - 0.701 - - - tenomodulin [Source:ZFIN;Acc:ZDB-GENE-080220-31]
91. C2H5orf22 C2H5orf22 196 1.46 - - - - - 0.740 0.720 - -
92. rag1 ENSDARG00000052122 13 1.456 - - 0.739 - 0.717 - - - - recombination activating gene 1 [Source:ZFIN;Acc:ZDB-GENE-990415-234]
93. slc5a1 ENSDARG00000013871 4 1 - - - - - - 1.000 - - solute carrier family 5 (sodium/glucose cotransporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1524]
94. polr3b ENSDARG00000062915, ENSDARG00000113895 144 1 - - - - - 1.000 - - - polymerase (RNA) III (DNA directed) polypeptide B [Source:ZFIN;Acc:ZDB-GENE-030131-2887]
95. dmrt1 ENSDARG00000007349 16 1 - 1.000 - - - - - - - doublesex and mab-3 related transcription factor 1 [Source:ZFIN;Acc:ZDB-GENE-050511-1]
96. CU929052.1 CU929052.1 642 1 - - - - - - 1.000 - -
97. SPDEF ENSDARG00000029930 60 1 - - - - - - 1.000 - - SAM pointed domain containing ETS transcription factor [Source:HGNC Symbol;Acc:HGNC:17257]
98. abcc9 ENSDARG00000015985 20 1 - 1.000 - - - - - - - ATP-binding cassette, sub-family C (CFTR/MRP), member 9 [Source:ZFIN;Acc:ZDB-GENE-050517-23]
99. erbb4a ENSDARG00000063207 55 1 1.000 - - - - - - - - erb-b2 receptor tyrosine kinase 4a [Source:ZFIN;Acc:ZDB-GENE-030918-4]
100. MLLT4 MLLT4 67 1 - 1.000 - - - - - - -

There are 1468 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA