Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for tpm3

Gene Name Gene ID Reads Annotation
tpm3 ENSDARG00000005162 86049 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]










Genes with expression patterns similar to tpm3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. tpm3 ENSDARG00000005162 86049 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
2. myl10 ENSDARG00000062592 101207 3.947 0.892 - - 0.741 0.834 0.737 - 0.743 - myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
3. tpm2 ENSDARG00000104682 36853 3.279 - - - 0.775 0.793 - 0.867 0.844 - tropomyosin 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-040625-114]
4. smyhc1 ENSDARG00000099959, ENSDARG00000115916 48476 3.047 0.702 - - 0.720 0.808 - - 0.817 - slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
5. tnnt2c ENSDARG00000032242 28801 2.409 - - 0.837 0.728 0.844 - - - - troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
6. mt-nd1 ENSDARG00000063895 272230 2.405 0.835 - 0.796 - 0.774 - - - - NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
7. tnni2b.1 ENSDARG00000035958 51597 2.395 0.764 - - - 0.874 - - 0.757 - troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
8. desma ENSDARG00000058656 30292 2.376 - - - 0.760 0.745 - 0.871 - - desmin a [Source:ZFIN;Acc:ZDB-GENE-980526-221]
9. acta1a ENSDARG00000036371 137508 2.305 0.779 - - - 0.790 - - 0.736 - actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
10. mef2ca ENSDARG00000029764 18547 2.268 - 0.711 - 0.727 0.830 - - - - myocyte enhancer factor 2ca [Source:ZFIN;Acc:ZDB-GENE-980526-253]
11. tmem38a ENSDARG00000024047 41883 2.267 - - - 0.773 0.785 - - 0.709 - transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
12. tnnt3a ENSDARG00000030270 112506 2.172 0.720 - - 0.729 0.723 - - - - troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
13. ryr1a ENSDARG00000011422 2377 1.69 - - - - - 0.817 0.873 - - ryanodine receptor 1a (skeletal) [Source:ZFIN;Acc:ZDB-GENE-020108-2]
14. klhl41b ENSDARG00000006757 10762 1.612 - - - 0.745 0.867 - - - - kelch-like family member 41b [Source:ZFIN;Acc:ZDB-GENE-030131-9875]
15. zgc:66286 zgc:66286 118947 1.607 - - - - 0.797 - - 0.810 -
16. tnnc1b ENSDARG00000037539 13945 1.604 - - - - 0.820 - - 0.784 - troponin C type 1b (slow) [Source:ZFIN;Acc:ZDB-GENE-040625-62]
17. si:ch211-32p8.1 si:ch211-32p8.1 3402 1.596 - - - - - - 0.880 0.716 -
18. atp5c1 31368 1.59 0.759 - - - - - 0.831 - - ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1, transcript variant 3
19. actn3b ENSDARG00000001431 15747 1.584 - - - - 0.739 - - - 0.845 actinin alpha 3b [Source:ZFIN;Acc:ZDB-GENE-030131-2040]
20. purbb ENSDARG00000103546 4983 1.573 - - - - 0.713 - 0.860 - - purine-rich element binding protein Bb [Source:ZFIN;Acc:ZDB-GENE-040426-1478]
21. rbfox1l ENSDARG00000021184, ENSDARG00000111700 26249 1.559 0.779 - - - 0.780 - - - - RNA binding fox-1 homolog 1, like [Source:ZFIN;Acc:ZDB-GENE-040923-2]
22. smyd1b ENSDARG00000091253 4964 1.556 - - 0.735 0.821 - - - - - SET and MYND domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-060522-1]
23. hsp90aa1.1 ENSDARG00000010478 47784 1.542 - - - 0.760 0.782 - - - - heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
24. tnnc2 ENSDARG00000070835, ENSDARG00000111155 259313 1.521 0.807 - - 0.714 - - - - - troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
25. cav3 ENSDARG00000024141 14906 1.518 - - - 0.784 0.734 - - - - caveolin 3 [Source:ZFIN;Acc:ZDB-GENE-050522-426]
26. txlnba ENSDARG00000020594 9385 1.507 - - - 0.748 0.759 - - - - taxilin beta a [Source:ZFIN;Acc:ZDB-GENE-030131-322]
27. actc1b ENSDARG00000099197 324665 1.494 0.736 - - - 0.758 - - - - actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
28. hspb8 ENSDARG00000058365, ENSDARG00000109236 8688 1.492 - - - 0.777 0.715 - - - - heat shock protein b8 [Source:ZFIN;Acc:ZDB-GENE-030131-2480]
29. cox17 ENSDARG00000069920, ENSDARG00000114117 5591 1.491 - - - 0.738 0.753 - - - - cytochrome c oxidase copper chaperone COX17 [Source:ZFIN;Acc:ZDB-GENE-040912-91]
30. unc45b ENSDARG00000008433 8298 1.486 - 0.735 - - 0.751 - - - - unc-45 myosin chaperone B [Source:ZFIN;Acc:ZDB-GENE-020919-3]
31. klhl31 ENSDARG00000039066 13656 1.486 - - - 0.714 0.772 - - - - kelch-like family member 31 [Source:ZFIN;Acc:ZDB-GENE-030131-2052]
32. ntmt1 ENSDARG00000022399 5779 1.484 - - - 0.713 0.771 - - - - N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2055]
33. nexn ENSDARG00000057317 10972 1.481 - - - 0.775 0.706 - - - - nexilin (F actin binding protein) [Source:ZFIN;Acc:ZDB-GENE-041114-92]
34. usp5_1 ENSDARG00000014517, ENSDARG00000114598 5050 1.473 - - - 0.725 0.748 - - - - ubiquitin specific peptidase 5 (isopeptidase T) [Source:ZFIN;Acc:ZDB-GENE-040426-2584]
35. srl ENSDARG00000104587 11126 1.47 - - - 0.757 - - - 0.713 - sarcalumenin [Source:ZFIN;Acc:ZDB-GENE-061110-91]
36. tmem161a ENSDARG00000012790 16094 1.468 - - - 0.758 0.710 - - - - transmembrane protein 161A [Source:ZFIN;Acc:ZDB-GENE-041111-267]
37. SYNPO2 SYNPO2 7382 1.465 - - - 0.762 0.703 - - - -
38. txlnbb ENSDARG00000076241 6396 1.462 - - - - 0.745 - - 0.717 - taxilin beta b [Source:ZFIN;Acc:ZDB-GENE-070424-77]
39. zgc:92518 ENSDARG00000016343 3837 1.46 - - - 0.714 0.746 - - - - zgc:92518 [Source:ZFIN;Acc:ZDB-GENE-040718-53]
40. ak1 ENSDARG00000001950 26964 1.452 - - - 0.747 0.705 - - - - adenylate kinase 1 [Source:ZFIN;Acc:ZDB-GENE-040822-37]
41. AIMP1 ENSDARG00000060036 4136 1.452 - - - 0.707 0.745 - - - - aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 [Source:ZFIN;Acc:ZDB-GENE-060825-144]
42. ckmb ENSDARG00000040565 505935 1.444 - - - 0.737 0.707 - - - - creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
43. myhz1.3 ENSDARG00000067997 155509 1.441 - - - 0.732 0.709 - - - - myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
44. atp5h 18018 0.879 - - - - - - 0.879 - - ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d, transcript variant X1
45. vcl vcl 6667 0.879 - - - - - - 0.879 - -
46. aldh7a1 ENSDARG00000018426 4637 0.875 - - - - - - 0.875 - - aldehyde dehydrogenase 7 family, member A1 [Source:ZFIN;Acc:ZDB-GENE-030131-6129]
47. tmod4 ENSDARG00000020890 17436 0.872 - - - - - - 0.872 - - tropomodulin 4 (muscle) [Source:ZFIN;Acc:ZDB-GENE-991019-9]
48. wwp2 ENSDARG00000061345 3459 0.869 - - - - - - 0.869 - - WW domain containing E3 ubiquitin protein ligase 2 [Source:ZFIN;Acc:ZDB-GENE-000607-82]
49. NDUFB2 ENSDARG00000045490 9141 0.867 - - - - - - 0.867 - - NADH:ubiquinone oxidoreductase subunit B2 [Source:ZFIN;Acc:ZDB-GENE-040426-1762]
50. oafa ENSDARG00000075851 2015 0.866 - - - - - - 0.866 - - OAF homolog a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-090917-1]
51. lepre1 lepre1 5346 0.866 - - - - - - 0.866 - -
52. lfng ENSDARG00000037879 11783 0.866 - - - - - - 0.866 - - LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:ZFIN;Acc:ZDB-GENE-980605-16]
53. rnd3a ENSDARG00000076799 4705 0.866 - - - - - - 0.866 - - Rho family GTPase 3a [Source:ZFIN;Acc:ZDB-GENE-010319-40]
54. tmco1 ENSDARG00000069099, ENSDARG00000113013 4698 0.866 - - - - - - 0.866 - - transmembrane and coiled-coil domains 1 [Source:ZFIN;Acc:ZDB-GENE-050417-344]
55. pdlim5b ENSDARG00000027600 4252 0.866 - - - - - - 0.866 - - PDZ and LIM domain 5b [Source:ZFIN;Acc:ZDB-GENE-040426-908]
56. CCNA2 ENSDARG00000011094 3996 0.865 - - - - - - 0.865 - - cyclin A2 [Source:ZFIN;Acc:ZDB-GENE-020418-1]
57. rif1 ENSDARG00000062650, ENSDARG00000110568 1751 0.865 - - - - - - 0.865 - - replication timing regulatory factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3406]
58. hbbe2 ENSDARG00000045143, ENSDARG00000109554 5244 0.865 - - - - - - 0.865 - - hemoglobin beta embryonic-2 [Source:ZFIN;Acc:ZDB-GENE-040702-1]
59. SNORD33 SNORD33 3284 0.865 - - - - - - 0.865 - -
60. pinx1 ENSDARG00000023532 4452 0.865 - - - - - - 0.865 - - PIN2 (TERF1) interacting telomerase inhibitor 1 [Source:ZFIN;Acc:ZDB-GENE-030515-2]
61. thumpd3 ENSDARG00000059634, ENSDARG00000113066 7065 0.864 - - - - - - 0.864 - - THUMP domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9745]
62. cx44.1 cx44.1 799 0.864 - - - - - - 0.864 - -
63. PREX2 ENSDARG00000071692 827 0.864 - - - - - - 0.864 - - phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 [Source:ZFIN;Acc:ZDB-GENE-091113-37]
64. hoxc10a ENSDARG00000070348 2323 0.864 - - - - - - 0.864 - - homeobox C10a [Source:ZFIN;Acc:ZDB-GENE-990415-110]
65. LMLN ENSDARG00000061265 1618 0.864 - - - - - - 0.864 - - leishmanolysin-like (metallopeptidase M8 family) [Source:ZFIN;Acc:ZDB-GENE-081104-298]
66. pcif1 ENSDARG00000099084 2851 0.864 - - - - - - 0.864 - - PDX1 C-terminal inhibiting factor 1 [Source:ZFIN;Acc:ZDB-GENE-120920-2]
67. CR847934.1 CR847934.1 2658 0.864 - - - - - - 0.864 - -
68. plagl2 ENSDARG00000076657 2057 0.864 - - - - - - 0.864 - - pleiomorphic adenoma gene-like 2 [Source:ZFIN;Acc:ZDB-GENE-020806-1]
69. rfxap ENSDARG00000076891 1299 0.864 - - - - - - 0.864 - - regulatory factor X-associated protein [Source:ZFIN;Acc:ZDB-GENE-091204-321]
70. gcn1l1 gcn1l1 6031 0.864 - - - - - - 0.864 - -
71. FAT1 FAT1 689 0.864 - - - - - - 0.864 - -
72. ttll4 ENSDARG00000078935 1663 0.863 - - - - - - 0.863 - - tubulin tyrosine ligase-like family, member 4 [Source:ZFIN;Acc:ZDB-GENE-070912-313]
73. slc7a4 ENSDARG00000068286 1693 0.863 - - - - - - 0.863 - - solute carrier family 7, member 4 [Source:ZFIN;Acc:ZDB-GENE-030919-2]
74. si:ch211-51e12.7 ENSDARG00000045914 9598 0.863 - - - - - - 0.863 - - si:ch211-51e12.7 [Source:ZFIN;Acc:ZDB-GENE-030131-8279]
75. dct ENSDARG00000006008 2466 0.863 - - - - - - 0.863 - - dopachrome tautomerase [Source:ZFIN;Acc:ZDB-GENE-000508-1]
76. rtf1 ENSDARG00000008947 6596 0.863 - - - - - - 0.863 - - RTF1 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-030131-6778]
77. zgc:55558 ENSDARG00000013161, ENSDARG00000111354 1687 0.863 - - - - - - 0.863 - - zgc:55558 [Source:ZFIN;Acc:ZDB-GENE-040426-740]
78. cenpf ENSDARG00000055133 5267 0.862 - - - - - - 0.862 - - centromere protein F [Source:ZFIN;Acc:ZDB-GENE-041111-205]
79. ncl ENSDARG00000002710 16951 0.862 - - - - - - 0.862 - - nucleolin [Source:ZFIN;Acc:ZDB-GENE-030131-6986]
80. fam160a1 fam160a1 1445 0.862 - - - - - - 0.862 - -
81. CR388095.3 CR388095.3 2548 0.862 - - - - - - 0.862 - -
82. SNORD72 SNORD72 4018 0.862 - - - - - - 0.862 - -
83. slc4a2b ENSDARG00000052330 1900 0.862 - - - - - - 0.862 - - solute carrier family 4 (anion exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-030429-14]
84. TSG101 TSG101 1686 0.861 - - - - - - 0.861 - -
85. si:dkey-184p9.7 ENSDARG00000092726 2679 0.86 - - - - - - 0.860 - - si:dkey-184p9.7 [Source:ZFIN;Acc:ZDB-GENE-091204-97]
86. jagn1b ENSDARG00000014995 2063 0.858 - - - - - - 0.858 - - jagunal homolog 1b [Source:ZFIN;Acc:ZDB-GENE-040801-103]
87. lhfpl2b_1 ENSDARG00000098153 1596 0.857 - - - - - - 0.857 - - LHFPL tetraspan subfamily member 2b [Source:ZFIN;Acc:ZDB-GENE-050417-10]
88. alcamb ENSDARG00000058538 5672 0.857 - - - - - - 0.857 - - activated leukocyte cell adhesion molecule b [Source:ZFIN;Acc:ZDB-GENE-030131-1768]
89. atp6ap1b ENSDARG00000037153 3970 0.856 - - - - - - 0.856 - - ATPase H+ transporting accessory protein 1b [Source:ZFIN;Acc:ZDB-GENE-020423-2]
90. si:ch211-160e1.5 5586 0.854 - - - - - - 0.854 - - si:ch211-160e1.5
91. marcksl1a ENSDARG00000039034 37303 0.851 - - - - - - 0.851 - - MARCKS-like 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2146]
92. ABHD12B ABHD12B 1877 0.85 - - - - - - 0.850 - -
93. ptprfb ENSDARG00000005754 7178 0.848 - - - - - - 0.848 - - protein tyrosine phosphatase, receptor type, f, b [Source:ZFIN;Acc:ZDB-GENE-060503-530]
94. sgms1 ENSDARG00000029621 6376 0.848 - - - - - - 0.848 - - sphingomyelin synthase 1 [Source:ZFIN;Acc:ZDB-GENE-061103-295]
95. ist1 ENSDARG00000051888 4536 0.848 - - - - - - 0.848 - - increased sodium tolerance 1 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-179]
96. ostc ENSDARG00000104901 16240 0.847 - - - - - - 0.847 - - oligosaccharyltransferase complex subunit [Source:ZFIN;Acc:ZDB-GENE-040426-1079]
97. myh10 ENSDARG00000000103 7522 0.846 - - - - - - 0.846 - - myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
98. ATP5B 76711 0.845 - - - - - - 0.845 - - ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
99. murcb murcb 13655 0.844 - - - - - - - - 0.844
100. si:ch211-226o13.2 84923 0.842 0.842 - - - - - - - - si:ch211-226o13.2

There are 188 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA