Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for tpm1

Gene Name Gene ID Reads Annotation
tpm1 ENSDARG00000087402 1666 tropomyosin 1 (alpha) [Source:ZFIN;Acc:ZDB-GENE-040426-854]










Genes with expression patterns similar to tpm1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. tpm1 ENSDARG00000087402 1666 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 tropomyosin 1 (alpha) [Source:ZFIN;Acc:ZDB-GENE-040426-854]
2. tcp11l2 ENSDARG00000027316 1906 2.26 0.825 - - - - - 0.731 0.704 - t-complex 11, testis-specific-like 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1956]
3. THOP1 ENSDARG00000013776 2717 2.176 - 0.734 - - - 0.723 0.719 - - thimet oligopeptidase 1 [Source:ZFIN;Acc:ZDB-GENE-040718-47]
4. prickle1a ENSDARG00000040649 700 1.637 0.869 - - - - - - 0.768 - prickle homolog 1a [Source:ZFIN;Acc:ZDB-GENE-030724-5]
5. vapal ENSDARG00000115862 3108 1.632 0.847 - - - - - 0.785 - - VAMP (vesicle-associated membrane protein)-associated protein A, like [Source:ZFIN;Acc:ZDB-GENE-040718-281]
6. mrpl37 ENSDARG00000062916 1600 1.63 0.843 - - - - - 0.787 - - mitochondrial ribosomal protein L37 [Source:ZFIN;Acc:ZDB-GENE-050309-20]
7. wu:fb15e04 wu:fb15e04 1713 1.628 0.850 - - - - - 0.778 - -
8. wdr13 ENSDARG00000022974 1283 1.622 0.815 - - - - 0.807 - - - WD repeat domain 13 [Source:ZFIN;Acc:ZDB-GENE-050522-274]
9. ubl7 ubl7 1435 1.622 0.895 - - - - - 0.727 - -
10. paip2b ENSDARG00000008706 4255 1.612 0.822 0.790 - - - - - - - poly(A) binding protein interacting protein 2B [Source:ZFIN;Acc:ZDB-GENE-040426-1736]
11. fam208b ENSDARG00000074168 2244 1.61 0.834 - - - - - 0.776 - - family with sequence similarity 208, member B [Source:ZFIN;Acc:ZDB-GENE-041111-225]
12. sf3b5 ENSDARG00000016855 4015 1.609 0.897 - - - - - 0.712 - - splicing factor 3b, subunit 5 [Source:ZFIN;Acc:ZDB-GENE-040718-181]
13. sox4a ENSDARG00000004588, ENSDARG00000096389 2213 1.604 0.860 0.744 - - - - - - - SRY (sex determining region Y)-box 4a [Source:ZFIN;Acc:ZDB-GENE-030131-8290]
14. MRPL52 ENSDARG00000090568 4402 1.602 0.902 - - - - - 0.700 - - mitochondrial ribosomal protein L52 [Source:ZFIN;Acc:ZDB-GENE-110325-1]
15. cpsf5 cpsf5 1841 1.598 0.838 0.760 - - - - - - -
16. bmp5 ENSDARG00000101701 517 1.588 0.837 0.751 - - - - - - - bone morphogenetic protein 5 [Source:ZFIN;Acc:ZDB-GENE-040426-1413]
17. arglu1b ENSDARG00000018319 1110 1.584 0.867 - - - - - 0.717 - - arginine and glutamate rich 1b [Source:ZFIN;Acc:ZDB-GENE-040426-736]
18. snx27a ENSDARG00000033804 2249 1.578 0.783 - - - - - 0.795 - - sorting nexin family member 27a [Source:ZFIN;Acc:ZDB-GENE-060503-371]
19. gdap1l1 ENSDARG00000028628 233 1.578 0.875 - - - - - - 0.703 - ganglioside induced differentiation associated protein 1-like 1 [Source:ZFIN;Acc:ZDB-GENE-080812-2]
20. eif3m ENSDARG00000013931 8117 1.577 - 0.720 - - - - 0.857 - - eukaryotic translation initiation factor 3, subunit M [Source:ZFIN;Acc:ZDB-GENE-040426-2643]
21. stau1 ENSDARG00000044182, ENSDARG00000115476 6121 1.572 - - - - - 0.866 0.706 - - staufen double-stranded RNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6372]
22. hist2h2l ENSDARG00000068996, ENSDARG00000112150 10411 1.571 - - - - - 0.852 0.719 - - histone 2, H2, like [Source:ZFIN;Acc:ZDB-GENE-031118-36]
23. arpp21 ENSDARG00000061081 892 1.562 - - - - - - 0.761 0.801 - cAMP-regulated phosphoprotein, 21 [Source:ZFIN;Acc:ZDB-GENE-081104-296]
24. mycbp ENSDARG00000091001 1511 1.558 0.856 - - - - 0.702 - - - c-myc binding protein [Source:ZFIN;Acc:ZDB-GENE-060331-97]
25. mlf1 ENSDARG00000077301 789 1.558 - - - 0.852 - - 0.706 - - myeloid leukemia factor 1 [Source:ZFIN;Acc:ZDB-GENE-080917-7]
26. slc37a4b ENSDARG00000077180, ENSDARG00000093531 565 1.555 - - - - - - 0.747 0.808 - solute carrier family 37 (glucose-6-phosphate transporter), member 4b [Source:ZFIN;Acc:ZDB-GENE-040426-827]
27. SCML2 ENSDARG00000012949 1310 1.551 0.830 0.721 - - - - - - - Scm polycomb group protein like 2 [Source:ZFIN;Acc:ZDB-GENE-130530-546]
28. zgc:136930 ENSDARG00000055192 1208 1.548 - - - - - 0.749 0.799 - - zgc:136930 [Source:ZFIN;Acc:ZDB-GENE-060312-16]
29. ylpm1 ENSDARG00000043680 7676 1.542 - - - - - 0.820 0.722 - - YLP motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2196]
30. cct8 ENSDARG00000008243 6843 1.536 - 0.759 - - - - 0.777 - - chaperonin containing TCP1, subunit 8 (theta) [Source:ZFIN;Acc:ZDB-GENE-040426-876]
31. eif4e2 ENSDARG00000038585 2116 1.533 - - - - - 0.780 0.753 - - eukaryotic translation initiation factor 4E family member 2 [Source:ZFIN;Acc:ZDB-GENE-050327-59]
32. acadl ENSDARG00000088357, ENSDARG00000115321 1179 1.52 - 0.749 - - - - - 0.771 - acyl-CoA dehydrogenase long chain [Source:ZFIN;Acc:ZDB-GENE-040426-771]
33. MRPS36 ENSDARG00000079823, ENSDARG00000113427 3694 1.516 - - - 0.788 - - 0.728 - - mitochondrial ribosomal protein S36 [Source:ZFIN;Acc:ZDB-GENE-081104-343]
34. pfdn5 ENSDARG00000035043, ENSDARG00000109218, ENSDARG00000110370, ENSDARG00000113603 7566 1.513 - 0.735 - - - - 0.778 - - prefoldin 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6858]
35. orc1 ENSDARG00000039217, ENSDARG00000115400 795 1.508 0.807 0.701 - - - - - - - origin recognition complex, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6960]
36. tmem106bb ENSDARG00000035949, ENSDARG00000113700 1415 1.507 - 0.801 - - - - 0.706 - - transmembrane protein 106Bb [Source:ZFIN;Acc:ZDB-GENE-050913-37]
37. apex1 ENSDARG00000045843 6345 1.502 - 0.769 - - - - 0.733 - - APEX nuclease (multifunctional DNA repair enzyme) 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2761]
38. nudt3a ENSDARG00000016256 2713 1.498 - 0.705 - - - - 0.793 - - nudix (nucleoside diphosphate linked moiety X)-type motif 3a [Source:ZFIN;Acc:ZDB-GENE-040426-792]
39. atp5o 10343 1.491 - - - - - 0.717 0.774 - - ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit
40. sox6 ENSDARG00000015536 7728 1.489 - - - - - 0.703 0.786 - - SRY (sex determining region Y)-box 6 [Source:ZFIN;Acc:ZDB-GENE-081120-6]
41. PDK2 PDK2 822 1.487 - - - 0.701 - - 0.786 - -
42. etfa ENSDARG00000101631 2946 1.486 0.762 - - - - - - 0.724 - electron transfer flavoprotein subunit alpha [Source:ZFIN;Acc:ZDB-GENE-030131-4449]
43. psmd12 ENSDARG00000052377 7763 1.485 0.759 - - - - 0.726 - - - proteasome 26S subunit, non-ATPase 12 [Source:ZFIN;Acc:ZDB-GENE-030131-617]
44. mrps16 ENSDARG00000098972, ENSDARG00000115452 2085 1.485 - 0.755 - - - - 0.730 - - mitochondrial ribosomal protein S16 [Source:ZFIN;Acc:ZDB-GENE-041010-123]
45. nars ENSDARG00000061100 2948 1.485 - 0.754 - - - - 0.731 - - asparaginyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-1016]
46. Sep-06 Sep-06 5465 1.482 0.738 - - - - - 0.744 - -
47. opa1_1 ENSDARG00000070801 1424 1.481 - - - - - - 0.712 0.769 - optic atrophy 1 (autosomal dominant) [Source:ZFIN;Acc:ZDB-GENE-041114-7]
48. CR388002.1 CR388002.1 1998 1.478 - - - - - 0.707 0.771 - -
49. hadhab ENSDARG00000060594 3664 1.477 0.750 - - - - - 0.727 - - hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha b [Source:ZFIN;Acc:ZDB-GENE-041111-204]
50. pomp ENSDARG00000032296 4439 1.476 - 0.748 - - - - 0.728 - - proteasome maturation protein [Source:ZFIN;Acc:ZDB-GENE-040801-10]
51. cox14 ENSDARG00000092124 2229 1.476 - - - - - 0.738 0.738 - - cytochrome c oxidase assembly factor COX14 [Source:ZFIN;Acc:ZDB-GENE-060503-626]
52. BX539313.4 BX539313.4 1858 1.476 - - - - - 0.760 0.716 - -
53. fus ENSDARG00000037968, ENSDARG00000113554, ENSDARG00000114284 4319 1.468 0.761 0.707 - - - - - - - FUS RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-040426-1010]
54. add3a ENSDARG00000040874 4938 1.467 - 0.719 - - - - 0.748 - - adducin 3 (gamma) a [Source:ZFIN;Acc:ZDB-GENE-030131-2721]
55. trib3 ENSDARG00000016200 1231 1.467 0.762 - - - - - 0.705 - - tribbles pseudokinase 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2609]
56. hif1an ENSDARG00000031915 2098 1.466 - - - - - 0.704 0.762 - - hypoxia inducible factor 1 subunit alpha inhibitor [Source:ZFIN;Acc:ZDB-GENE-030826-19]
57. TTC28 ENSDARG00000114920 580 1.458 - 0.701 - - - 0.757 - - - tetratricopeptide repeat domain 28 [Source:HGNC Symbol;Acc:HGNC:29179]
58. srfa ENSDARG00000053918 1773 1.457 - 0.726 - - - - 0.731 - - serum response factor a [Source:ZFIN;Acc:ZDB-GENE-990714-29]
59. ccnt2b ENSDARG00000036510 3353 1.457 - 0.732 - - - - 0.725 - - cyclin T2b [Source:ZFIN;Acc:ZDB-GENE-030131-183]
60. gfm1 ENSDARG00000063624 523 1.452 - 0.701 - - - - 0.751 - - G elongation factor, mitochondrial 1 [Source:ZFIN;Acc:ZDB-GENE-061013-79]
61. chrnd ENSDARG00000019342 2728 1.452 - - - - - - 0.706 0.746 - cholinergic receptor, nicotinic, delta (muscle) [Source:ZFIN;Acc:ZDB-GENE-030131-6665]
62. MRPS12_1 MRPS12_1 2714 1.45 0.743 - - 0.707 - - - - -
63. ppp2r4 1005 1.447 - - - - - 0.730 0.717 - - protein phosphatase 2A activator, regulatory subunit 4
64. naa15a ENSDARG00000003213 5889 1.445 - - - 0.701 - - 0.744 - - N(alpha)-acetyltransferase 15, NatA auxiliary subunit a [Source:ZFIN;Acc:ZDB-GENE-030131-2392]
65. KIAA0355 3250 1.445 0.709 - - - - - 0.736 - - KIAA0355 ortholog, transcript variant X1
66. DGKI 306 1.441 - 0.727 - - - 0.714 - - - diacylglycerol kinase, iota
67. chrne ENSDARG00000034307, ENSDARG00000112263 1022 1.438 - - - - - - 0.710 0.728 - cholinergic receptor, nicotinic, epsilon [Source:ZFIN;Acc:ZDB-GENE-040808-32]
68. cry4 ENSDARG00000011890 980 1.438 - - - - - 0.723 0.715 - - cryptochrome circadian clock 4 [Source:ZFIN;Acc:ZDB-GENE-010426-7]
69. kpna1 ENSDARG00000016360 1275 1.438 - 0.718 - - - - 0.720 - - karyopherin alpha 1 (importin alpha 5) [Source:ZFIN;Acc:ZDB-GENE-091116-39]
70. tm2d3 ENSDARG00000076618 2310 1.437 - - - - - 0.707 0.730 - - TM2 domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-070620-20]
71. prmt1 ENSDARG00000010246 11311 1.433 - 0.704 - - - 0.729 - - - protein arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-693]
72. ndufb3 ENSDARG00000075709 6609 1.428 - - 0.703 - - - 0.725 - - NADH:ubiquinone oxidoreductase subunit B3 [Source:ZFIN;Acc:ZDB-GENE-091204-407]
73. nt5dc3 ENSDARG00000062949 816 1.428 - - - 0.721 - - 0.707 - - 5'-nucleotidase domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-080523-3]
74. uncx4.1 ENSDARG00000037760 472 1.423 - - - - - 0.716 - 0.707 - Unc4.1 homeobox (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-050714-1]
75. ube2v2 ENSDARG00000028198 23341 1.417 - - - - - 0.712 0.705 - - ubiquitin-conjugating enzyme E2 variant 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2919]
76. eif3ha ENSDARG00000102452 9238 0.913 - - - - - - 0.913 - - eukaryotic translation initiation factor 3, subunit H, a [Source:ZFIN;Acc:ZDB-GENE-040808-19]
77. dnaja3a ENSDARG00000058494, ENSDARG00000111151 2497 0.913 0.913 - - - - - - - - DnaJ (Hsp40) homolog, subfamily A, member 3A [Source:ZFIN;Acc:ZDB-GENE-030131-7837]
78. phf14 ENSDARG00000061458 492 0.912 0.912 - - - - - - - - PHD finger protein 14 [Source:ZFIN;Acc:ZDB-GENE-030131-1796]
79. wdr74 ENSDARG00000061993, ENSDARG00000111467, ENSDARG00000115634 416 0.907 0.907 - - - - - - - - WD repeat domain 74 [Source:ZFIN;Acc:ZDB-GENE-060929-1138]
80. plcd3a ENSDARG00000052957 467 0.906 0.906 - - - - - - - - phospholipase C, delta 3a [Source:ZFIN;Acc:ZDB-GENE-070620-1]
81. immt ENSDARG00000102874 3435 0.904 - - - - - - 0.904 - - inner membrane protein, mitochondrial (mitofilin) [Source:ZFIN;Acc:ZDB-GENE-030131-5417]
82. psma4 ENSDARG00000045928 5112 0.904 0.904 - - - - - - - - proteasome subunit alpha 4 [Source:ZFIN;Acc:ZDB-GENE-040426-1932]
83. st8sia6 ENSDARG00000021195 2244 0.904 0.904 - - - - - - - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 [Source:ZFIN;Acc:ZDB-GENE-060322-9]
84. GK2 GK2 813 0.901 - 0.901 - - - - - - -
85. slc35a4 ENSDARG00000062379 1088 0.899 - 0.899 - - - - - - - solute carrier family 35, member A4 [Source:ZFIN;Acc:ZDB-GENE-061103-595]
86. bysl ENSDARG00000001057 2621 0.898 0.898 - - - - - - - - bystin-like [Source:ZFIN;Acc:ZDB-GENE-040426-1287]
87. gfer ENSDARG00000070061 1119 0.898 0.898 - - - - - - - - growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060810-186]
88. eif4eb ENSDARG00000013274, ENSDARG00000114799 1262 0.897 0.897 - - - - - - - - eukaryotic translation initiation factor 4eb [Source:ZFIN;Acc:ZDB-GENE-041121-14]
89. si:ch211-264e16.1 ENSDARG00000068947 1358 0.897 0.897 - - - - - - - - si:ch211-264e16.1 [Source:ZFIN;Acc:ZDB-GENE-060503-226]
90. usp49 ENSDARG00000000229 706 0.897 0.897 - - - - - - - - ubiquitin specific peptidase 49 [Source:ZFIN;Acc:ZDB-GENE-050208-484]
91. bmpr1ba ENSDARG00000104100 828 0.897 0.897 - - - - - - - - bone morphogenetic protein receptor, type IBa [Source:ZFIN;Acc:ZDB-GENE-991208-8]
92. cib1 ENSDARG00000103118 291 0.894 0.894 - - - - - - - - calcium and integrin binding 1 (calmyrin) [Source:ZFIN;Acc:ZDB-GENE-050417-170]
93. tmem55a 1331 0.893 0.893 - - - - - - - - transmembrane protein 55A
94. cby1 ENSDARG00000077409, ENSDARG00000113018 772 0.893 0.893 - - - - - - - - chibby homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-5074]
95. CBFA2T3 ENSDARG00000079012 6799 0.891 0.891 - - - - - - - - core-binding factor, runt domain, alpha subunit 2; translocated to, 3 [Source:ZFIN;Acc:ZDB-GENE-070209-2]
96. commd2 ENSDARG00000003373 540 0.891 0.891 - - - - - - - - COMM domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040718-118]
97. foxo3b ENSDARG00000042904 5046 0.889 - - - - - - 0.889 - - forkhead box O3b [Source:ZFIN;Acc:ZDB-GENE-990708-6]
98. PLEKHM3 ENSDARG00000030633 496 0.887 0.887 - - - - - - - - pleckstrin homology domain containing, family M, member 3 [Source:ZFIN;Acc:ZDB-GENE-070912-382]
99. SPAG5 SPAG5 1117 0.887 0.887 - - - - - - - -
100. CARKD 1398 0.886 0.886 - - - - - - - - carbohydrate kinase domain containing, transcript variant X7

There are 1256 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA