Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for top1mt

Gene Name Gene ID Reads Annotation
top1mt ENSDARG00000027824, ENSDARG00000104809 195 DNA topoisomerase I mitochondrial [Source:ZFIN;Acc:ZDB-GENE-040624-2]










Genes with expression patterns similar to top1mt

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. top1mt ENSDARG00000027824, ENSDARG00000104809 195 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 DNA topoisomerase I mitochondrial [Source:ZFIN;Acc:ZDB-GENE-040624-2]
2. med18 ENSDARG00000041237 247 1.691 - - - - - 0.753 0.938 - - mediator of RNA polymerase II transcription, subunit 18 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-1276]
3. LRFN5_1 LRFN5_1 96 1.577 - - - - - 0.737 0.840 - -
4. sprn ENSDARG00000056004 128 1.569 - - - - - 0.825 0.744 - - shadow of prion protein [Source:ZFIN;Acc:ZDB-GENE-031110-1]
5. si:ch211-74m13.3 ENSDARG00000076144 55 1.554 0.804 0.750 - - - - - - - si:ch211-74m13.3 [Source:ZFIN;Acc:ZDB-GENE-060503-219]
6. RAB39B RAB39B 482 1.537 - - - - - 0.788 0.749 - -
7. APBB3 ENSDARG00000053771 654 1.521 - - - - - 0.821 0.700 - - amyloid beta (A4) precursor protein-binding, family B, member 3 [Source:ZFIN;Acc:ZDB-GENE-140106-53]
8. her8.2 ENSDARG00000069675 315 1.509 - - - - - 0.733 0.776 - - hairy-related 8.2 [Source:ZFIN;Acc:ZDB-GENE-060815-4]
9. wdr73 ENSDARG00000023152, ENSDARG00000111497 217 1.508 0.800 0.708 - - - - - - - WD repeat domain 73 [Source:ZFIN;Acc:ZDB-GENE-050417-126]
10. EOGT ENSDARG00000022853 366 1.506 - 0.751 - - - 0.755 - - - EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase [Source:ZFIN;Acc:ZDB-GENE-120813-8]
11. sv2bb ENSDARG00000060711 196 1.503 - - - - - 0.778 0.725 - - synaptic vesicle glycoprotein 2Bb [Source:ZFIN;Acc:ZDB-GENE-030131-2789]
12. TMEM55B_1 TMEM55B_1 495 1.502 - - - - - 0.716 0.786 - -
13. pald1b ENSDARG00000039352 66 1.495 0.706 0.789 - - - - - - - phosphatase domain containing, paladin 1b [Source:ZFIN;Acc:ZDB-GENE-070424-88]
14. rassf2a ENSDARG00000029865, ENSDARG00000113625 1134 1.491 - - - - - 0.778 0.713 - - Ras association (RalGDS/AF-6) domain family member 2a [Source:ZFIN;Acc:ZDB-GENE-040912-124]
15. diras1a ENSDARG00000028066 126 1.489 - - - - - 0.775 0.714 - - DIRAS family, GTP-binding RAS-like 1a [Source:ZFIN;Acc:ZDB-GENE-030131-5788]
16. dpysl5b ENSDARG00000059311 600 1.484 - - - - - 0.722 0.762 - - dihydropyrimidinase-like 5b [Source:ZFIN;Acc:ZDB-GENE-050720-4]
17. tmlhe ENSDARG00000077547 301 1.46 0.739 - - - - - 0.721 - - trimethyllysine hydroxylase, epsilon [Source:ZFIN;Acc:ZDB-GENE-091204-144]
18. raly ENSDARG00000059972 481 1.459 - - - - - 0.758 0.701 - - RALY heterogeneous nuclear ribonucleoprotein [Source:ZFIN;Acc:ZDB-GENE-041010-127]
19. phactr3a ENSDARG00000058243 150 1.459 - - - - - 0.742 0.717 - - phosphatase and actin regulator 3a [Source:ZFIN;Acc:ZDB-GENE-080220-4]
20. CABZ01021538.1 CABZ01021538.1 67 1.454 - - - - - 0.717 0.737 - -
21. ctnnd2b ENSDARG00000003779 964 1.451 - - - - - 0.726 0.725 - - catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
22. npas3b npas3b 1446 1.45 - 0.743 - - - - 0.707 - -
23. gng3 ENSDARG00000009553 2530 1.447 - - - - - 0.738 0.709 - - guanine nucleotide binding protein (G protein), gamma 3 [Source:ZFIN;Acc:ZDB-GENE-010705-1]
24. NPTXR NPTXR 241 1.446 - - - - - 0.707 0.739 - -
25. CU467824.1 CU467824.1 76 1.44 0.723 - - - - 0.717 - - -
26. rheb ENSDARG00000090213 1432 1.439 - - - - - 0.706 0.733 - - Ras homolog, mTORC1 binding [Source:ZFIN;Acc:ZDB-GENE-040426-1690]
27. zgc:109889 ENSDARG00000069600, ENSDARG00000113538 554 1.436 - - - - - 0.719 0.717 - - zgc:109889 [Source:ZFIN;Acc:ZDB-GENE-050522-547]
28. scn2b ENSDARG00000101713 796 1.434 - - - - - 0.728 0.706 - - sodium channel, voltage-gated, type II, beta [Source:ZFIN;Acc:ZDB-GENE-070920-1]
29. glrbb ENSDARG00000052769, ENSDARG00000113828 467 1.434 - - - - - 0.703 0.731 - - glycine receptor, beta b [Source:ZFIN;Acc:ZDB-GENE-040801-106]
30. neurla neurla 465 1.433 - 0.727 - - - 0.706 - - -
31. itm2ca ENSDARG00000043448 1265 1.425 - - - - - 0.710 0.715 - - integral membrane protein 2Ca [Source:ZFIN;Acc:ZDB-GENE-040718-284]
32. dok6 ENSDARG00000063032 88 1.414 - - - - - 0.703 0.711 - - docking protein 6 [Source:ZFIN;Acc:ZDB-GENE-070410-50]
33. ccdc6b ENSDARG00000017595 828 0.919 - - - - - - 0.919 - - coiled-coil domain containing 6b [Source:ZFIN;Acc:ZDB-GENE-040426-869]
34. trim9 ENSDARG00000039123 53 0.916 - - - - - - 0.916 - - tripartite motif containing 9 [Source:ZFIN;Acc:ZDB-GENE-030131-8043]
35. irx1a ENSDARG00000101831 644 0.912 - - - - - - 0.912 - - iroquois homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-040707-1]
36. foxj1a ENSDARG00000101919 1095 0.904 - - - - - - 0.904 - - forkhead box J1a [Source:ZFIN;Acc:ZDB-GENE-060929-1178]
37. SLC9B1 SLC9B1 137 0.902 0.902 - - - - - - - -
38. EGFR_2 EGFR_2 71 0.898 0.898 - - - - - - - -
39. MTRF1 ENSDARG00000033579 107 0.893 - - - - - - 0.893 - - mitochondrial translational release factor 1 [Source:ZFIN;Acc:ZDB-GENE-050220-8]
40. smyhc2 ENSDARG00000099115, ENSDARG00000103969, ENSDARG00000111606 153 0.892 0.892 - - - - - - - - slow myosin heavy chain 2 [Source:ZFIN;Acc:ZDB-GENE-070822-12]
41. ksr2 ENSDARG00000094526 134 0.892 - - - - - - 0.892 - - kinase suppressor of ras 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8047]
42. POLE4 ENSDARG00000013016 848 0.885 - - - - - - 0.885 - - polymerase (DNA-directed), epsilon 4, accessory subunit [Source:ZFIN;Acc:ZDB-GENE-050522-309]
43. PCDH8 ENSDARG00000102185 52 0.879 0.879 - - - - - - - - protocadherin 8 [Source:HGNC Symbol;Acc:HGNC:8660]
44. limk1b ENSDARG00000003022 172 0.879 - 0.879 - - - - - - - LIM domain kinase 1b [Source:ZFIN;Acc:ZDB-GENE-110411-106]
45. C18H3orf33 ENSDARG00000040582 77 0.877 - - - - - - 0.877 - - c18h3orf33 homolog (H. sapiens) [Source:ZFIN;Acc:ZDB-GENE-061121-2]
46. SGSM1_1 SGSM1_1 40 0.876 - - - - - - 0.876 - -
47. SMUG1 ENSDARG00000101308 236 0.876 - - - - - - 0.876 - - single-strand-selective monofunctional uracil-DNA glycosylase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9473]
48. ARHGEF12 ARHGEF12 392 0.876 0.876 - - - - - - - -
49. mak ENSDARG00000059287 144 0.874 - - - - - - 0.874 - - male germ cell-associated kinase [Source:ZFIN;Acc:ZDB-GENE-030131-7279]
50. dacha ENSDARG00000010132 648 0.874 - - - - - - 0.874 - - dachshund a [Source:ZFIN;Acc:ZDB-GENE-020402-3]
51. f3b ENSDARG00000005673 240 0.873 - - - - - - 0.873 - - coagulation factor IIIb [Source:ZFIN;Acc:ZDB-GENE-050417-234]
52. si:dkey-24i24.3 ENSDARG00000088452 27 0.872 - - - - - - 0.872 - - si:dkey-24i24.3 [Source:ZFIN;Acc:ZDB-GENE-110411-103]
53. lrrc9 ENSDARG00000054352 25 0.872 - - - - - - 0.872 - - leucine rich repeat containing 9 [Source:ZFIN;Acc:ZDB-GENE-080917-56]
54. pcyt1ba ENSDARG00000058162 206 0.872 - - - - - - 0.872 - - phosphate cytidylyltransferase 1, choline, beta a [Source:ZFIN;Acc:ZDB-GENE-061220-4]
55. tctn2 ENSDARG00000035633 84 0.872 - - - - - - 0.872 - - tectonic family member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-751]
56. mlh1 ENSDARG00000025948 130 0.871 - - - - - 0.871 - - - mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli) [Source:ZFIN;Acc:ZDB-GENE-040426-1600]
57. RTKN_1 RTKN_1 176 0.867 - 0.867 - - - - - - -
58. CABZ01030107.1 ENSDARG00000058631 52 0.866 - - - - - 0.866 - - -
59. wdr55 ENSDARG00000007217 196 0.866 - 0.866 - - - - - - - WD repeat domain 55 [Source:ZFIN;Acc:ZDB-GENE-040924-7]
60. zgc:174877 ENSDARG00000079278 143 0.865 - - - - - 0.865 - - - zgc:174877 [Source:ZFIN;Acc:ZDB-GENE-041008-66]
61. si:ch211-236l14.4 ENSDARG00000062059 466 0.865 0.865 - - - - - - - - si:ch211-236l14.4 [Source:ZFIN;Acc:ZDB-GENE-081104-189]
62. ENSDARG00000090222 ENSDARG00000090222 402 0.864 - 0.864 - - - - - - -
63. arl6ip4 ENSDARG00000105036, ENSDARG00000110324, ENSDARG00000116805 1142 0.863 - 0.863 - - - - - - - ADP-ribosylation factor-like 6 interacting protein 4 [Source:ZFIN;Acc:ZDB-GENE-050522-405]
64. fam155a ENSDARG00000075858 91 0.858 - - - - - - 0.858 - - family with sequence similarity 155, member A [Source:ZFIN;Acc:ZDB-GENE-090313-34]
65. CABZ01072954.1 CABZ01072954.1 2330 0.855 - - - - - - 0.855 - -
66. ldb2b ENSDARG00000034896, ENSDARG00000113987, ENSDARG00000116485 976 0.855 - - - - - - 0.855 - - LIM domain binding 2b [Source:ZFIN;Acc:ZDB-GENE-990415-137]
67. fbxo16 ENSDARG00000033949 35 0.855 - - - - - - 0.855 - - F-box protein 16 [Source:ZFIN;Acc:ZDB-GENE-041015-747]
68. pomcb ENSDARG00000069307 72 0.855 - - - - - 0.855 - - - proopiomelanocortin b [Source:ZFIN;Acc:ZDB-GENE-041014-294]
69. slc25a6 ENSDARG00000005853, ENSDARG00000113366 99 0.852 - - - - - - 0.852 - - solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 [Source:ZFIN;Acc:ZDB-GENE-070912-446]
70. ttc32 ENSDARG00000069241 386 0.851 0.851 - - - - - - - - tetratricopeptide repeat domain 32 [Source:ZFIN;Acc:ZDB-GENE-041014-158]
71. CLMP 108 0.85 - - - - - - 0.850 - - CXADR like membrane protein
72. NTN5 ENSDARG00000036422 371 0.849 - 0.849 - - - - - - - netrin 5 [Source:ZFIN;Acc:ZDB-GENE-130530-593]
73. CU972452.1 CU972452.1 1046 0.849 0.849 - - - - - - - -
74. si:dkey-100n10.2 101 0.847 - - - - - - 0.847 - - si:dkey-100n10.2
75. THEM4 ENSDARG00000061621 364 0.844 - 0.844 - - - - - - - thioesterase superfamily member 4 [Source:ZFIN;Acc:ZDB-GENE-070112-982]
76. nptx1l ENSDARG00000074671 569 0.844 - - - - - - 0.844 - - neuronal pentraxin 1 like [Source:ZFIN;Acc:ZDB-GENE-040426-2418]
77. EML5 ENSDARG00000053517 74 0.843 - - - - - - 0.843 - - echinoderm microtubule associated protein like 5 [Source:HGNC Symbol;Acc:HGNC:18197]
78. alkbh8 ENSDARG00000060256 102 0.841 - - - - - - 0.841 - - alkB homolog 8, tRNA methyltransferase [Source:ZFIN;Acc:ZDB-GENE-100922-251]
79. rps8b ENSDARG00000057368 68 0.841 0.841 - - - - - - - - ribosomal protein S8b [Source:ZFIN;Acc:ZDB-GENE-050522-202]
80. tbata ENSDARG00000067831 193 0.836 - - - - - - 0.836 - - thymus, brain and testes associated [Source:ZFIN;Acc:ZDB-GENE-121030-4]
81. xkr8.3 ENSDARG00000039996 457 0.835 - 0.835 - - - - - - - XK, Kell blood group complex subunit-related family, member 8, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-041010-107]
82. pou3f3a ENSDARG00000042032 2835 0.833 - - - - - - 0.833 - - POU class 3 homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-980526-220]
83. CR388231.1 ENSDARG00000098710 153 0.832 - 0.832 - - - - - - -
84. glra1 ENSDARG00000012019 315 0.83 - - - - - - 0.830 - - glycine receptor, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-991117-1]
85. si:ch211-282k23.2 ENSDARG00000093591 447 0.829 - - - - - - 0.829 - - si:ch211-282k23.2 [Source:ZFIN;Acc:ZDB-GENE-050420-314]
86. acpl2 acpl2 283 0.828 0.828 - - - - - - - -
87. rad51ap1 ENSDARG00000045853 811 0.828 - 0.828 - - - - - - - RAD51 associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-050419-96]
88. trnt1 ENSDARG00000075297, ENSDARG00000116975 366 0.828 0.828 - - - - - - - - tRNA nucleotidyl transferase, CCA-adding, 1 [Source:ZFIN;Acc:ZDB-GENE-040625-176]
89. snoU2_19 snoU2_19 301 0.826 - - - - - - 0.826 - -
90. aatkb ENSDARG00000104442 392 0.826 - - - - - - 0.826 - - apoptosis-associated tyrosine kinase b [Source:ZFIN;Acc:ZDB-GENE-100812-6]
91. plcd4a ENSDARG00000057975 241 0.825 0.825 - - - - - - - - phospholipase C, delta 4a [Source:ZFIN;Acc:ZDB-GENE-050208-654]
92. crygn1 ENSDARG00000102129 23 0.824 - - - - - - 0.824 - - crystallin, gamma N1 [Source:ZFIN;Acc:ZDB-GENE-050225-1]
93. glcci1 496 0.824 - 0.824 - - - - - - - glucocorticoid induced 1
94. arhgap35 254 0.824 - - - - - 0.824 - - - Rho GTPase activating protein 35b, transcript variant X2
95. PRICKLE2 PRICKLE2 69 0.822 - - - - - 0.822 - - -
96. zgc:136493 ENSDARG00000029259 132 0.822 - - - - - - 0.822 - - zgc:136493 [Source:ZFIN;Acc:ZDB-GENE-060512-216]
97. kif5c ENSDARG00000076027 424 0.822 - - - - - - 0.822 - - kinesin family member 5C [Source:ZFIN;Acc:ZDB-GENE-081105-14]
98. pfkfb4 pfkfb4 194 0.822 0.822 - - - - - - - -
99. CR352249.1 ENSDARG00000114701 857 0.822 0.822 - - - - - - - - solute carrier family 38, member 8b [Source:NCBI gene;Acc:795255]
100. amn1 ENSDARG00000070478, ENSDARG00000111705 72 0.821 - - - - - - 0.821 - - antagonist of mitotic exit network 1 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060825-13]

There are 738 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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