Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for tmed3

Gene Name Gene ID Reads Annotation
tmed3 ENSDARG00000028816, ENSDARG00000113132 1686 transmembrane p24 trafficking protein 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8335]










Genes with expression patterns similar to tmed3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. tmed3 ENSDARG00000028816, ENSDARG00000113132 1686 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 transmembrane p24 trafficking protein 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8335]
2. si:dkey-13i19.8 ENSDARG00000093058 4617 2.384 - 0.722 - - - 0.835 - - 0.827 si:dkey-13i19.8 [Source:ZFIN;Acc:ZDB-GENE-041210-156]
3. colgalt2 ENSDARG00000014670 1932 2.325 - - 0.772 - - - - 0.800 0.753 collagen beta(1-O)galactosyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-070222-1]
4. cnep1r1 ENSDARG00000036064 1440 2.158 - 0.711 0.725 - - - 0.722 - - CTD nuclear envelope phosphatase 1 regulatory subunit 1 [Source:ZFIN;Acc:ZDB-GENE-050417-425]
5. traf2b ENSDARG00000101036 429 1.752 - - - - - 0.859 - - 0.893 Tnf receptor-associated factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5345]
6. col4a3 ENSDARG00000003395 499 1.711 - - - - - 0.821 - - 0.890 collagen, type IV, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-070802-4]
7. arhgap10 ENSDARG00000078326 994 1.71 - 0.854 - - - 0.856 - - - Rho GTPase activating protein 10 [Source:ZFIN;Acc:ZDB-GENE-060512-221]
8. myeov2 3351 1.708 - - - - - 0.796 - - 0.912 myeloma overexpressed 2
9. lxn ENSDARG00000043102 415 1.705 - - - - - 0.861 - - 0.844 latexin [Source:ZFIN;Acc:ZDB-GENE-041212-18]
10. rfx2 ENSDARG00000013575 1275 1.703 - - - - - 0.846 - - 0.857 regulatory factor X, 2 (influences HLA class II expression) [Source:ZFIN;Acc:ZDB-GENE-050227-4]
11. gcnt4a ENSDARG00000035198, ENSDARG00000110336 661 1.702 - - - - - 0.856 - - 0.846 glucosaminyl (N-acetyl) transferase 4, core 2, a [Source:ZFIN;Acc:ZDB-GENE-030131-3231]
12. cldn7b ENSDARG00000014047, ENSDARG00000114912 2960 1.702 - - - - - 0.844 - - 0.858 claudin 7b [Source:ZFIN;Acc:ZDB-GENE-001103-5]
13. pak2a ENSDARG00000068177 8931 1.701 - - 0.814 - - - - - 0.887 p21 protein (Cdc42/Rac)-activated kinase 2a [Source:ZFIN;Acc:ZDB-GENE-021011-2]
14. dnajb9a ENSDARG00000052072 578 1.695 - - - - - 0.859 - - 0.836 DnaJ (Hsp40) homolog, subfamily B, member 9a [Source:ZFIN;Acc:ZDB-GENE-050626-115]
15. alg9 ENSDARG00000012840 631 1.689 - - - - - - - 0.842 0.847 ALG9, alpha-1,2-mannosyltransferase [Source:ZFIN;Acc:ZDB-GENE-040426-1270]
16. grp ENSDARG00000043074 747 1.684 - - - - - 0.846 - - 0.838 gastrin-releasing peptide [Source:ZFIN;Acc:ZDB-GENE-060526-117]
17. lama5 ENSDARG00000058543 2782 1.676 - - 0.873 - - - - 0.803 - laminin, alpha 5 [Source:ZFIN;Acc:ZDB-GENE-030131-9823]
18. C3H16orf58 C3H16orf58 487 1.67 - - 0.795 - - 0.875 - - -
19. sh3rf1 ENSDARG00000070470 1463 1.668 - - - - - 0.850 - - 0.818 SH3 domain containing ring finger 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6288]
20. kbp kbp 701 1.668 - - - - - 0.837 - - 0.831
21. ATF6B 960 1.664 - - 0.786 - - - - - 0.878 activating transcription factor 6 beta
22. si:dkey-240e12.6 ENSDARG00000110137 674 1.662 - - - - - 0.867 - 0.795 - si:dkey-240e12.6 [Source:ZFIN;Acc:ZDB-GENE-050208-367]
23. adipor1b ENSDARG00000042717 1348 1.654 - - - - - 0.744 - - 0.910 adiponectin receptor 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2896]
24. arhgap29b ENSDARG00000017748 812 1.646 - - 0.795 - - 0.851 - - - Rho GTPase activating protein 29b [Source:ZFIN;Acc:ZDB-GENE-031010-44]
25. CR759791.3 CR759791.3 134 1.641 - - - - - 0.858 - 0.783 -
26. nipal3 ENSDARG00000021147, ENSDARG00000109606 1058 1.637 - - - - - 0.800 - - 0.837 NIPA like domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-040718-379]
27. cdc20 ENSDARG00000100741 3264 1.637 - - - - - 0.825 - - 0.812 cell division cycle 20 homolog [Source:ZFIN;Acc:ZDB-GENE-040426-2044]
28. CU929394.1 CU929394.1 405 1.635 - - 0.793 - - - - - 0.842
29. dhrs13a.2 ENSDARG00000111240 491 1.634 - - - - - 0.863 - 0.771 - dehydrogenase/reductase (SDR family) member 13a, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-040912-69]
30. SCARF2 1117 1.631 - - 0.777 - - 0.854 - - - scavenger receptor class F, member 2
31. optc ENSDARG00000014358 1295 1.621 - - 0.753 - - 0.868 - - - opticin [Source:ZFIN;Acc:ZDB-GENE-030131-1798]
32. BX511121.1 ENSDARG00000029997 1774 1.621 - - 0.712 - - - - - 0.909
33. tmem243a ENSDARG00000042214, ENSDARG00000110407 527 1.617 - - - - - 0.894 0.723 - - transmembrane protein 243, mitochondrial a [Source:ZFIN;Acc:ZDB-GENE-050417-264]
34. uba3 ENSDARG00000057987, ENSDARG00000116639 1181 1.617 - - 0.787 - - 0.830 - - - ubiquitin-like modifier activating enzyme 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2825]
35. si:ch73-173m3.3 si:ch73-173m3.3 425 1.612 - - 0.762 - - 0.850 - - -
36. cbfa2t2 ENSDARG00000074337 4323 1.606 - - - - - 0.848 - - 0.758 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 [Source:ZFIN;Acc:ZDB-GENE-070209-1]
37. zgc:153952 739 1.604 - - 0.771 - - - - - 0.833 zgc:153952, transcript variant X1
38. TRIP10 TRIP10 1079 1.602 - - 0.807 - - 0.795 - - -
39. SH3D21 ENSDARG00000099448 1726 1.6 - - - - - 0.812 - 0.788 - SH3 domain containing 21 [Source:ZFIN;Acc:ZDB-GENE-051120-57]
40. fzd2 ENSDARG00000054438 585 1.597 - - 0.793 - - - - 0.804 - frizzled class receptor 2 [Source:ZFIN;Acc:ZDB-GENE-990415-224]
41. CLDN23 CLDN23 2002 1.597 - - 0.740 - - - - 0.857 -
42. nup88 ENSDARG00000003235, ENSDARG00000111135 1114 1.594 - - 0.706 - - 0.888 - - - nucleoporin 88 [Source:ZFIN;Acc:ZDB-GENE-050522-297]
43. rabep2 ENSDARG00000061213 465 1.592 - - - - - 0.861 0.731 - - rabaptin, RAB GTPase binding effector protein 2 [Source:ZFIN;Acc:ZDB-GENE-070112-572]
44. copa ENSDARG00000004173 3977 1.589 - - 0.701 - - - - - 0.888 coatomer protein complex, subunit alpha [Source:ZFIN;Acc:ZDB-GENE-020905-2]
45. elk3 ENSDARG00000018688, ENSDARG00000110853 1108 1.588 - 0.777 - - - - - - 0.811 ELK3, ETS-domain protein [Source:ZFIN;Acc:ZDB-GENE-030716-2]
46. tgm1l4 ENSDARG00000101407 800 1.585 - - - - - 0.870 0.715 - - transglutaminase 1 like 4 [Source:ZFIN;Acc:ZDB-GENE-050913-29]
47. rhot2 ENSDARG00000056328 1123 1.579 - 0.709 - - - 0.870 - - - ras homolog family member T2 [Source:ZFIN;Acc:ZDB-GENE-051120-96]
48. meox1 ENSDARG00000007891, ENSDARG00000115382 1584 1.576 - 0.723 0.853 - - - - - - mesenchyme homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040718-149]
49. xpot ENSDARG00000099652 3026 1.576 - - - - - 0.716 - - 0.860 exportin, tRNA (nuclear export receptor for tRNAs) [Source:ZFIN;Acc:ZDB-GENE-041210-4]
50. acadl ENSDARG00000088357, ENSDARG00000115321 1179 1.575 - - - - - 0.722 - - 0.853 acyl-CoA dehydrogenase long chain [Source:ZFIN;Acc:ZDB-GENE-040426-771]
51. mxra5b ENSDARG00000076309 190 1.574 - - 0.785 - - - - 0.789 - matrix-remodelling associated 5b [Source:ZFIN;Acc:ZDB-GENE-081104-119]
52. APOD APOD 3404 1.571 - - 0.797 - - - - - 0.774
53. ppl ENSDARG00000101043 9196 1.571 - - - - - 0.754 - 0.817 - periplakin [Source:ZFIN;Acc:ZDB-GENE-041008-196]
54. nucks1b ENSDARG00000012777 4468 1.565 - 0.749 - - - - - - 0.816 nuclear casein kinase and cyclin-dependent kinase substrate 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4544]
55. becn1 ENSDARG00000079128 581 1.564 - - - - - 0.851 - 0.713 - beclin 1, autophagy related [Source:ZFIN;Acc:ZDB-GENE-040426-1666]
56. xrn1 ENSDARG00000091652 2864 1.562 - - 0.718 - - - - - 0.844 5'-3' exoribonuclease 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1203]
57. mdm4 ENSDARG00000057513 1954 1.56 - - 0.795 - - 0.765 - - - MDM4, p53 regulator [Source:ZFIN;Acc:ZDB-GENE-030131-6872]
58. p4ha2 ENSDARG00000010085 2008 1.559 - - 0.856 - - - - 0.703 - procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-030827-1]
59. trub2 ENSDARG00000028379 783 1.551 - 0.750 0.801 - - - - - - TruB pseudouridine (psi) synthase family member 2 [Source:ZFIN;Acc:ZDB-GENE-040704-41]
60. si:ch211-139n6.3 ENSDARG00000093230 147 1.549 - - - - - 0.841 - 0.708 - si:ch211-139n6.3 [Source:ZFIN;Acc:ZDB-GENE-041111-114]
61. tacc3 ENSDARG00000005454 2305 1.546 - - 0.716 - - 0.830 - - - transforming, acidic coiled-coil containing protein 3 [Source:ZFIN;Acc:ZDB-GENE-050522-327]
62. nfkbiaa ENSDARG00000005481 948 1.545 - - - - - 0.784 - 0.761 - nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a [Source:ZFIN;Acc:ZDB-GENE-040426-2227]
63. uqcc uqcc 4742 1.544 - - - - - 0.782 - - 0.762
64. ARF5 ENSDARG00000070472, ENSDARG00000115687 6101 1.543 - - - - - - 0.753 - 0.790 ADP-ribosylation factor 5 [Source:ZFIN;Acc:ZDB-GENE-030910-5]
65. senp3b ENSDARG00000056741 1296 1.539 - 0.707 - - - - - - 0.832 SUMO specific peptidase 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6714]
66. fgfbp1 fgfbp1 445 1.536 - 0.710 - - - 0.826 - - -
67. sptssa ENSDARG00000071203 2306 1.532 - - - - - 0.815 0.717 - - serine palmitoyltransferase, small subunit A [Source:ZFIN;Acc:ZDB-GENE-050320-26]
68. map3k7 ENSDARG00000020469 2845 1.531 - - 0.769 - - - - - 0.762 mitogen-activated protein kinase kinase kinase 7 [Source:ZFIN;Acc:ZDB-GENE-041001-135]
69. clk2b ENSDARG00000059870 525 1.531 - 0.709 - - - 0.822 - - - CDC-like kinase 2b [Source:ZFIN;Acc:ZDB-GENE-060929-1126]
70. sbds ENSDARG00000027803 846 1.53 - - - - - 0.723 0.807 - - SBDS, ribosome maturation factor [Source:ZFIN;Acc:ZDB-GENE-040426-1116]
71. mogat3b ENSDARG00000003635 394 1.529 - - - - - 0.803 - 0.726 - monoacylglycerol O-acyltransferase 3b [Source:ZFIN;Acc:ZDB-GENE-110302-2]
72. vimp 4034 1.529 - - 0.744 - - 0.785 - - - VCP-interacting membrane selenoprotein
73. mctp2a ENSDARG00000001414 307 1.526 - - - - - 0.806 - 0.720 - multiple C2 domains, transmembrane 2a [Source:ZFIN;Acc:ZDB-GENE-040724-63]
74. tab3 ENSDARG00000062063 525 1.526 - - - - - 0.824 0.702 - - TGF-beta activated kinase 1 (MAP3K7) binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-060503-408]
75. TSTD1 TSTD1 608 1.521 - 0.702 0.819 - - - - - -
76. dusp6 ENSDARG00000070914, ENSDARG00000116888 4473 1.52 - - - - - - 0.758 - 0.762 dual specificity phosphatase 6 [Source:ZFIN;Acc:ZDB-GENE-030613-1]
77. tead3a ENSDARG00000074321 2240 1.513 - - 0.701 - - - - - 0.812 TEA domain family member 3 a [Source:ZFIN;Acc:ZDB-GENE-031112-10]
78. CAMTA2 ENSDARG00000092799 1950 1.508 - - 0.734 - - - - - 0.774 calmodulin binding transcription activator 2 [Source:ZFIN;Acc:ZDB-GENE-090313-6]
79. CABZ01003826.1_1 CABZ01003826.1_1 1154 1.506 - - 0.758 - - 0.748 - - -
80. gnai2b ENSDARG00000017294 686 1.498 - - - - - 0.707 - 0.791 - guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5861]
81. sptlc1 ENSDARG00000042995, ENSDARG00000112519 1291 1.498 - - - - - - 0.770 0.728 - serine palmitoyltransferase, long chain base subunit 1 [Source:ZFIN;Acc:ZDB-GENE-050522-61]
82. clptm1 ENSDARG00000018973, ENSDARG00000109534, ENSDARG00000114443 2439 1.485 - - 0.732 - - 0.753 - - - cleft lip and palate associated transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-040801-265]
83. vps72 1164 1.478 - 0.742 0.736 - - - - - - vacuolar protein sorting 72 homolog (S. cerevisiae)
84. chtopa ENSDARG00000057234 3287 1.475 - 0.704 - - - 0.771 - - - chromatin target of PRMT1a [Source:ZFIN;Acc:ZDB-GENE-030131-210]
85. ccdc120 ENSDARG00000032856, ENSDARG00000114382 808 1.469 - 0.725 - - - - 0.744 - - coiled-coil domain containing 120 [Source:ZFIN;Acc:ZDB-GENE-061027-93]
86. brd8 ENSDARG00000025071 2605 1.459 - 0.737 - - - 0.722 - - - bromodomain containing 8 [Source:ZFIN;Acc:ZDB-GENE-030722-10]
87. ryr1a ENSDARG00000011422 2377 1.458 - 0.713 - - - 0.745 - - - ryanodine receptor 1a (skeletal) [Source:ZFIN;Acc:ZDB-GENE-020108-2]
88. mrpl3 ENSDARG00000103318 2308 1.458 - - 0.712 - - 0.746 - - - mitochondrial ribosomal protein L3 [Source:ZFIN;Acc:ZDB-GENE-030131-8227]
89. sp3a ENSDARG00000001549 1994 1.457 - - 0.725 - - - 0.732 - - sp3a transcription factor [Source:ZFIN;Acc:ZDB-GENE-070410-111]
90. vamp8 ENSDARG00000024116, ENSDARG00000114304 2747 1.457 - - 0.735 - - 0.722 - - - vesicle-associated membrane protein 8 (endobrevin) [Source:ZFIN;Acc:ZDB-GENE-030131-5215]
91. hmcn1 ENSDARG00000016936 1706 1.455 - - - - - 0.727 0.728 - - hemicentin 1 [Source:ZFIN;Acc:ZDB-GENE-041014-322]
92. laptm4a ENSDARG00000006397 1698 1.451 - - - 0.713 - 0.738 - - - lysosomal protein transmembrane 4 alpha [Source:ZFIN;Acc:ZDB-GENE-030131-1024]
93. rpa2 ENSDARG00000037188 4284 1.436 - 0.710 - - - - - - 0.726 replication protein A2 [Source:ZFIN;Acc:ZDB-GENE-010131-3]
94. THOP1 ENSDARG00000013776 2717 1.43 - 0.714 0.716 - - - - - - thimet oligopeptidase 1 [Source:ZFIN;Acc:ZDB-GENE-040718-47]
95. BOLA2B BOLA2B 2957 1.427 - - 0.720 - - 0.707 - - -
96. fbxw5 ENSDARG00000099139 2802 1.403 - 0.702 0.701 - - - - - - F-box and WD repeat domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2571]
97. rassf8b ENSDARG00000045485 1568 0.943 - - - - - - - - 0.943 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8b [Source:ZFIN;Acc:ZDB-GENE-040426-1338]
98. emilin3a ENSDARG00000078052 1652 0.94 - - - - - - - - 0.940 elastin microfibril interfacer 3a [Source:ZFIN;Acc:ZDB-GENE-080612-2]
99. mfap2 ENSDARG00000059367 3774 0.938 - - - - - - - - 0.938 microfibril associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6710]
100. afap1l2 ENSDARG00000074806 367 0.938 - - - - - - - - 0.938 actin filament associated protein 1-like 2 [Source:ZFIN;Acc:ZDB-GENE-100318-1]

There are 1411 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA