Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for tcf3b

Gene Name Gene ID Reads Annotation
tcf3b ENSDARG00000099999, ENSDARG00000112646 3589 transcription factor 3b [Source:ZFIN;Acc:ZDB-GENE-051113-64]










Genes with expression patterns similar to tcf3b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. tcf3b ENSDARG00000099999, ENSDARG00000112646 3589 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 transcription factor 3b [Source:ZFIN;Acc:ZDB-GENE-051113-64]
2. ncalda ENSDARG00000070688 5069 3.683 - - 0.951 0.980 - 0.888 - 0.864 - neurocalcin delta a [Source:ZFIN;Acc:ZDB-GENE-080220-28]
3. arpp19b ENSDARG00000039880 4823 3.433 - - 0.946 0.971 - - 0.764 - 0.752 cAMP-regulated phosphoprotein 19b [Source:ZFIN;Acc:ZDB-GENE-040426-930]
4. naa40 ENSDARG00000024109, ENSDARG00000090570 4759 3.117 - - - - - 0.828 0.860 0.729 0.700 N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050417-105]
5. emc3 ENSDARG00000020607 3406 2.78 - - 0.963 0.986 - - - 0.831 - ER membrane protein complex subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2904]
6. SLC7A5 ENSDARG00000099265, ENSDARG00000115845 2319 2.656 - - - 0.992 - - 0.809 0.855 - solute carrier family 7 (amino acid transporter light chain, L system), member 5 [Source:ZFIN;Acc:ZDB-GENE-080818-4]
7. dennd5a ENSDARG00000017006 3426 2.557 - 0.715 0.968 - - - - 0.874 - DENN/MADD domain containing 5A [Source:ZFIN;Acc:ZDB-GENE-071211-1]
8. prep ENSDARG00000057151 3016 2.514 - - 0.968 - - 0.845 - - 0.701 prolyl endopeptidase [Source:ZFIN;Acc:ZDB-GENE-050522-14]
9. cops7a ENSDARG00000022788, ENSDARG00000112421 5302 2.505 - - - 0.985 - - 0.722 0.798 - COP9 constitutive photomorphogenic homolog subunit 7A [Source:ZFIN;Acc:ZDB-GENE-030131-8680]
10. cnot1 ENSDARG00000004174, ENSDARG00000109411 4625 2.504 - - - - - 0.863 - 0.824 0.817 CCR4-NOT transcription complex, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040915-1]
11. GATAD2B ENSDARG00000005834 3855 2.481 - - 0.917 - - - - 0.846 0.718 GATA zinc finger domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-060503-655]
12. hnrnpul1 ENSDARG00000040564 6550 2.448 - - 0.976 - - - 0.704 - 0.768 heterogeneous nuclear ribonucleoprotein U-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2432]
13. yth2 yth2 3716 2.42 - 0.702 - - - - 0.791 0.927 -
14. kdm6bb ENSDARG00000056929 4807 2.418 - 0.716 - 0.990 - - - - 0.712 lysine (K)-specific demethylase 6B, b [Source:ZFIN;Acc:ZDB-GENE-040724-166]
15. ppm1g ENSDARG00000075559 6516 2.268 - 0.737 0.775 - - - - 0.756 - protein phosphatase, Mg2+/Mn2+ dependent, 1G [Source:ZFIN;Acc:ZDB-GENE-030425-4]
16. zgc:113208 ENSDARG00000035610, ENSDARG00000109302 1095 2.259 0.715 - - - - - 0.774 - 0.770 zgc:113208 [Source:ZFIN;Acc:ZDB-GENE-050417-450]
17. lypla2 ENSDARG00000053656 8971 2.184 - - - - - 0.701 0.747 0.736 - lysophospholipase II [Source:ZFIN;Acc:ZDB-GENE-040426-1715]
18. fzr1 fzr1 2984 1.956 - - 0.963 0.993 - - - - -
19. rab5c ENSDARG00000026712 4733 1.948 - - 0.959 0.989 - - - - - RAB5C, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-031118-30]
20. eftud2 ENSDARG00000012261 3081 1.946 - - 0.969 0.977 - - - - - elongation factor Tu GTP binding domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1569]
21. mrpl11 ENSDARG00000013075 2927 1.94 - - 0.952 0.988 - - - - - mitochondrial ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040718-294]
22. efnb3b ENSDARG00000042277 5823 1.91 - - 0.963 0.947 - - - - - ephrin-B3b [Source:ZFIN;Acc:ZDB-GENE-010618-3]
23. ppp3ccb ENSDARG00000057456, ENSDARG00000116250 6265 1.907 - - 0.929 0.978 - - - - - protein phosphatase 3, catalytic subunit, gamma isozyme, b [Source:ZFIN;Acc:ZDB-GENE-070112-1102]
24. pinx1 ENSDARG00000023532 4452 1.879 - - 0.939 - - - - 0.940 - PIN2 (TERF1) interacting telomerase inhibitor 1 [Source:ZFIN;Acc:ZDB-GENE-030515-2]
25. fam122b ENSDARG00000036500, ENSDARG00000116582 1408 1.863 - - - 0.997 - - - 0.866 - family with sequence similarity 122B [Source:ZFIN;Acc:ZDB-GENE-040801-204]
26. ube2h ENSDARG00000000019 9900 1.837 - - 0.884 0.953 - - - - - ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-030616-67]
27. CD99L2 ENSDARG00000056722 5588 1.831 - - - 0.992 - - - 0.839 - CD99 molecule-like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1986]
28. skp2 ENSDARG00000004937, ENSDARG00000114929 1584 1.829 - - 0.973 - - - - 0.856 - S-phase kinase-associated protein 2, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-030219-158]
29. bmpr2a ENSDARG00000011941 2972 1.823 - - - 0.993 - - - - 0.830 bone morphogenetic protein receptor, type II a (serine/threonine kinase) [Source:ZFIN;Acc:ZDB-GENE-070618-1]
30. PAPD5 2090 1.812 - 0.818 - 0.994 - - - - - PAP associated domain containing 5, transcript variant X1
31. dr1 ENSDARG00000105098, ENSDARG00000113528 5263 1.81 - - - - - 0.857 - 0.953 - down-regulator of transcription 1 [Source:ZFIN;Acc:ZDB-GENE-061013-797]
32. mxd3 ENSDARG00000098350 3040 1.801 - - - 0.983 - 0.818 - - - MAX dimerization protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1588]
33. sf3a3 ENSDARG00000100114 4511 1.795 - - 0.940 - - 0.855 - - - splicing factor 3a, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040908-1]
34. fam135a ENSDARG00000059843 2352 1.794 - - 0.966 - - - 0.828 - - family with sequence similarity 135, member A [Source:ZFIN;Acc:ZDB-GENE-080130-1]
35. ubap2 ubap2 4167 1.779 - - - 0.986 - - - - 0.793
36. ier5l ENSDARG00000054906, ENSDARG00000110793, ENSDARG00000114072 4216 1.779 - - 0.965 - - - - - 0.814 immediate early response 5-like [Source:ZFIN;Acc:ZDB-GENE-030131-5134]
37. nme3 ENSDARG00000100990 3889 1.774 - - 0.948 - - - - 0.826 - NME/NM23 nucleoside diphosphate kinase 3 [Source:ZFIN;Acc:ZDB-GENE-000210-34]
38. nsun2 ENSDARG00000056665 740 1.773 - 0.808 0.965 - - - - - - NOP2/Sun RNA methyltransferase family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4017]
39. arih2 ENSDARG00000012848 7087 1.771 - - 0.860 - - - - 0.911 - ariadne homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2158]
40. creb3l3l ENSDARG00000020926, ENSDARG00000116217 1458 1.769 - - 0.949 - - - - 0.820 - cAMP responsive element binding protein 3-like 3 like [Source:ZFIN;Acc:ZDB-GENE-040426-2942]
41. parn ENSDARG00000102634 2049 1.768 - 0.772 - 0.996 - - - - - poly(A)-specific ribonuclease (deadenylation nuclease) [Source:ZFIN;Acc:ZDB-GENE-040426-880]
42. MRPL55 MRPL55 1711 1.762 - 0.838 0.924 - - - - - -
43. utp18 ENSDARG00000102618 1983 1.746 - - 0.937 - - - 0.809 - - UTP18 small subunit (SSU) processome component [Source:ZFIN;Acc:ZDB-GENE-060929-668]
44. pak4 ENSDARG00000018110 1962 1.739 - - 0.898 - - - 0.841 - - p21 protein (Cdc42/Rac)-activated kinase 4 [Source:ZFIN;Acc:ZDB-GENE-040704-69]
45. SSBP4 ENSDARG00000056483 5156 1.737 - 0.760 - 0.977 - - - - - single stranded DNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-469]
46. snx18a ENSDARG00000067713, ENSDARG00000109647 765 1.737 - 0.740 - 0.997 - - - - - sorting nexin 18a [Source:ZFIN;Acc:ZDB-GENE-070705-339]
47. dlgap4a ENSDARG00000060849 1813 1.734 - - 0.962 - - - - - 0.772 discs, large (Drosophila) homolog-associated protein 4a [Source:ZFIN;Acc:ZDB-GENE-080219-51]
48. tmed4 ENSDARG00000024954 3476 1.732 - - 0.962 - - 0.770 - - - transmembrane p24 trafficking protein 4 [Source:ZFIN;Acc:ZDB-GENE-040625-140]
49. nxf1 ENSDARG00000055076 3251 1.731 - - 0.962 - - - - - 0.769 nuclear RNA export factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2585]
50. xpot ENSDARG00000099652 3026 1.729 - - - 0.985 - 0.744 - - - exportin, tRNA (nuclear export receptor for tRNAs) [Source:ZFIN;Acc:ZDB-GENE-041210-4]
51. thrap3b ENSDARG00000098228 4396 1.721 - - 0.889 - - - - 0.832 - thyroid hormone receptor associated protein 3b [Source:ZFIN;Acc:ZDB-GENE-040516-9]
52. e2f4 ENSDARG00000101578, ENSDARG00000109320 1783 1.72 - - 0.967 - - - - - 0.753 E2F transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2773]
53. bxdc2 ENSDARG00000098935 1348 1.716 - 0.755 0.961 - - - - - - brix domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-060518-1]
54. pa2g4b ENSDARG00000070657 7999 1.712 - 0.765 - 0.947 - - - - - proliferation-associated 2G4, b [Source:ZFIN;Acc:ZDB-GENE-030131-2182]
55. mcrs1 ENSDARG00000020840 3232 1.709 - - - 0.997 - - 0.712 - - microspherule protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2434]
56. srp9 ENSDARG00000042851 3254 1.704 - - 0.901 - - 0.803 - - - signal recognition particle 9 [Source:ZFIN;Acc:ZDB-GENE-040426-1106]
57. vta1 ENSDARG00000013732 6072 1.703 - 0.730 0.973 - - - - - - vesicle (multivesicular body) trafficking 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2154]
58. tfdp1a ENSDARG00000019293, ENSDARG00000111589 1118 1.703 0.734 - 0.969 - - - - - - transcription factor Dp-1, a [Source:ZFIN;Acc:ZDB-GENE-040426-2883]
59. ubtf ENSDARG00000035066 4070 1.702 - - 0.968 - - - - - 0.734 upstream binding transcription factor [Source:ZFIN;Acc:ZDB-GENE-030616-252]
60. rhoua ENSDARG00000019709 1506 1.697 - - - 0.997 - - 0.700 - - ras homolog family member Ua [Source:ZFIN;Acc:ZDB-GENE-040618-3]
61. ywhae1 ENSDARG00000006399, ENSDARG00000109636, ENSDARG00000109789 13364 1.696 - - - - - 0.840 - 0.856 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-030131-779]
62. si:ch73-375g18.1 ENSDARG00000075024 2431 1.695 - - 0.957 - - - 0.738 - - si:ch73-375g18.1 [Source:ZFIN;Acc:ZDB-GENE-110408-56]
63. GTSF1L GTSF1L 2089 1.693 - 0.741 0.952 - - - - - -
64. dynlt1 ENSDARG00000045909 2451 1.693 - 0.794 0.899 - - - - - - dynein, light chain, Tctex-type 1 [Source:ZFIN;Acc:ZDB-GENE-041210-9]
65. JMJD1C_1 JMJD1C_1 3094 1.692 - - 0.964 - - - 0.728 - -
66. nmt1a ENSDARG00000052966 5918 1.691 - 0.714 - 0.977 - - - - - N-myristoyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-050522-477]
67. fbxw11b ENSDARG00000017230, ENSDARG00000112841 2593 1.689 - - 0.969 - - - 0.720 - - F-box and WD repeat domain containing 11b [Source:ZFIN;Acc:ZDB-GENE-040426-2903]
68. ppifb ENSDARG00000052842 3533 1.686 - - 0.908 - - - - 0.778 - peptidylprolyl isomerase Fb [Source:ZFIN;Acc:ZDB-GENE-051030-126]
69. im:7136729 im:7136729 1625 1.686 - - 0.955 - - - 0.731 - -
70. nae1 ENSDARG00000011301, ENSDARG00000111542 1505 1.685 - - - - - - 0.813 0.872 - nedd8 activating enzyme E1 subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1552]
71. pcbp2 ENSDARG00000099039 4248 1.683 - 0.711 0.972 - - - - - - poly(rC) binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-563]
72. med13b ENSDARG00000003910 1143 1.682 - - 0.970 - - - 0.712 - - mediator complex subunit 13b [Source:ZFIN;Acc:ZDB-GENE-030131-3529]
73. ncoa2 ENSDARG00000017929 2520 1.681 - - 0.968 - - - - - 0.713 nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-010406-3]
74. fibpa ENSDARG00000016058 2148 1.681 - - 0.866 - - - 0.815 - - fibroblast growth factor (acidic) intracellular binding protein a [Source:ZFIN;Acc:ZDB-GENE-040426-1363]
75. DVL3 1098 1.68 - - - - - - 0.799 0.881 - dishevelled segment polarity protein 3
76. pknox1.1 ENSDARG00000018765 2149 1.679 - - - 0.965 - - 0.714 - - pbx/knotted 1 homeobox 1.1 [Source:ZFIN;Acc:ZDB-GENE-020122-5]
77. polr2j ENSDARG00000035146 1493 1.675 - 0.700 0.975 - - - - - - polymerase (RNA) II (DNA directed) polypeptide J [Source:ZFIN;Acc:ZDB-GENE-050522-120]
78. cab39l1 ENSDARG00000021374, ENSDARG00000112995 2033 1.673 - - 0.968 - - - 0.705 - - calcium binding protein 39, like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2897]
79. pip5k1ab ENSDARG00000024642 1988 1.672 - - 0.969 - - 0.703 - - - phosphatidylinositol-4-phosphate 5-kinase, type I, alpha, b [Source:ZFIN;Acc:ZDB-GENE-041111-123]
80. gtf2f1 ENSDARG00000032129 3041 1.663 - - 0.960 - - - - - 0.703 general transcription factor IIF, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4557]
81. mcm4 ENSDARG00000040041 7971 1.658 - - 0.796 0.862 - - - - - minichromosome maintenance complex component 4 [Source:ZFIN;Acc:ZDB-GENE-030131-9544]
82. bri3bp ENSDARG00000010108 6295 1.658 - - 0.899 - - - - 0.759 - bri3 binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-5254]
83. si:ch73-18b11.1 si:ch73-18b11.1 3840 1.654 - - 0.944 - - - - - 0.710
84. ift46 ENSDARG00000011240 2499 1.651 - - - - - - 0.768 0.883 - intraflagellar transport 46 homolog (Chlamydomonas) [Source:ZFIN;Acc:ZDB-GENE-080102-3]
85. phc2b_1 ENSDARG00000013224 1316 1.65 - - - - - - 0.802 0.848 - polyhomeotic homolog 2b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-1113]
86. tgif1 ENSDARG00000059337 4020 1.648 - - - - - 0.831 - - 0.817 TGFB-induced factor homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-030131-475]
87. cul3a ENSDARG00000038967 6155 1.643 - - - - - - 0.708 0.935 - cullin 3a [Source:ZFIN;Acc:ZDB-GENE-030131-3376]
88. erlin1 ENSDARG00000021991 5664 1.643 - - 0.909 - - - 0.734 - - ER lipid raft associated 1 [Source:ZFIN;Acc:ZDB-GENE-050327-13]
89. hmgb3a ENSDARG00000056725 15668 1.64 - - - 0.808 - - - 0.832 - high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
90. cldn5a ENSDARG00000043716 3865 1.636 - - 0.897 - - - - - 0.739 claudin 5a [Source:ZFIN;Acc:ZDB-GENE-040426-2442]
91. ssbp3b ENSDARG00000030155 7163 1.631 - - 0.894 - - 0.737 - - - single stranded DNA binding protein 3b [Source:ZFIN;Acc:ZDB-GENE-040426-2801]
92. kif22 ENSDARG00000102624 3694 1.629 - - - - - - - 0.876 0.753 kinesin family member 22 [Source:ZFIN;Acc:ZDB-GENE-080204-34]
93. hmgn3 ENSDARG00000036754, ENSDARG00000116728 11573 1.623 - - - - - - - 0.817 0.806 high mobility group nucleosomal binding domain 3 [Source:ZFIN;Acc:ZDB-GENE-041114-180]
94. wu:fq41a10 wu:fq41a10 7009 1.619 - - 0.839 - - - - 0.780 -
95. mcm5 ENSDARG00000019507 6407 1.617 - 0.772 0.845 - - - - - - minichromosome maintenance complex component 5 [Source:ZFIN;Acc:ZDB-GENE-021209-1]
96. mier1a ENSDARG00000041072 1690 1.605 - 0.775 - - - - 0.830 - - mesoderm induction early response 1a, transcriptional regulator [Source:ZFIN;Acc:ZDB-GENE-030131-409]
97. efnb2a ENSDARG00000020164 5262 1.605 - 0.736 0.869 - - - - - - ephrin-B2a [Source:ZFIN;Acc:ZDB-GENE-990415-67]
98. prkag1 ENSDARG00000003818 2800 1.605 - - - - - - - 0.885 0.720 protein kinase, AMP-activated, gamma 1 non-catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-040426-2188]
99. eif2s1a ENSDARG00000005827 5992 1.603 - - - - - - 0.852 - 0.751 eukaryotic translation initiation factor 2, subunit 1 alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-526]
100. nop58 ENSDARG00000104353 8497 1.599 - - - - - - 0.795 - 0.804 NOP58 ribonucleoprotein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-2140]

There are 1482 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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