Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for tbr1a

Gene Name Gene ID Reads Annotation
tbr1a ENSDARG00000076259 341 T-box, brain, 1a [Source:ZFIN;Acc:ZDB-GENE-060810-93]










Genes with expression patterns similar to tbr1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. tbr1a ENSDARG00000076259 341 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 T-box, brain, 1a [Source:ZFIN;Acc:ZDB-GENE-060810-93]
2. eomesa ENSDARG00000006640 257 4.432 - - 0.931 0.755 0.763 - 1.000 - 0.983 eomesodermin homolog a [Source:ZFIN;Acc:ZDB-GENE-001228-1]
3. neurod6b ENSDARG00000020794 164 3.459 - - 0.857 0.865 0.838 0.899 - - - neuronal differentiation 6b [Source:ZFIN;Acc:ZDB-GENE-010608-2]
4. tbr1b ENSDARG00000004712 248 2.612 - - 0.943 - 0.775 - - - 0.894 T-box, brain, 1b [Source:ZFIN;Acc:ZDB-GENE-000323-1]
5. helt ENSDARG00000056400 482 2.592 - - - 0.797 - - - 0.956 0.839 helt bHLH transcription factor [Source:ZFIN;Acc:ZDB-GENE-040824-6]
6. DBNDD1 DBNDD1 43 2.438 0.726 0.712 - - - - 1.000 - -
7. SYNDIG1 ENSDARG00000100751 165 2.435 0.831 0.712 - - - - - 0.892 - synapse differentiation inducing 1 [Source:HGNC Symbol;Acc:HGNC:15885]
8. ek1 ENSDARG00000020080 742 2.406 - 0.761 - 0.732 - - - 0.913 - eph-like kinase 1 [Source:ZFIN;Acc:ZDB-GENE-990415-58]
9. si:dkeyp-104f11.5 si:dkeyp-104f11.5 30 2 - 1.000 - - - - 1.000 - -
10. wu:fe38f03 wu:fe38f03 22 2 - 1.000 - - - - 1.000 - -
11. si:dkeyp-14d3.1 66 1.928 1.000 - - - - 0.928 - - - si:dkeyp-14d3.1, transcript variant X4
12. CU633740.1 CU633740.1 8 1.892 - 0.892 - - - - 1.000 - -
13. trim3a ENSDARG00000063711 44 1.875 - - - 0.875 - - 1.000 - - tripartite motif containing 3a [Source:ZFIN;Acc:ZDB-GENE-080522-4]
14. fhl1a ENSDARG00000071498, ENSDARG00000115132 164 1.857 - 0.857 - - - - 1.000 - - four and a half LIM domains 1a [Source:ZFIN;Acc:ZDB-GENE-040206-1]
15. slc25a3a ENSDARG00000027424 11 1.84 - - - 0.840 - - 1.000 - - solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3a [Source:ZFIN;Acc:ZDB-GENE-040426-1673]
16. si:dkey-235h8.1 si:dkey-235h8.1 2457 1.836 - - 0.836 - - - 1.000 - -
17. sult4a1 ENSDARG00000101967 205 1.834 - - - - - - 0.944 0.890 - sulfotransferase family 4A, member 1 [Source:ZFIN;Acc:ZDB-GENE-060421-2705]
18. TBC1D10C ENSDARG00000037408 18 1.833 - - - - - 0.833 1.000 - - TBC1 domain family, member 10C [Source:ZFIN;Acc:ZDB-GENE-130125-1]
19. tmeff1a ENSDARG00000008191 74 1.828 - - - - - 0.875 0.953 - - transmembrane protein with EGF-like and two follistatin-like domains 1a [Source:ZFIN;Acc:ZDB-GENE-070912-294]
20. neurod6a ENSDARG00000040008 17 1.821 - - 0.892 - - - - - 0.929 neuronal differentiation 6a [Source:ZFIN;Acc:ZDB-GENE-010608-1]
21. tcf7l2 ENSDARG00000004415, ENSDARG00000110486 1920 1.819 - - - - - 0.853 - - 0.966 transcription factor 7 like 2 [Source:ZFIN;Acc:ZDB-GENE-991110-8]
22. gpr19 ENSDARG00000102226 17 1.816 - 0.816 - - - - 1.000 - - G protein-coupled receptor 19 [Source:ZFIN;Acc:ZDB-GENE-040426-1295]
23. hs3st1l2 ENSDARG00000035578 279 1.815 - - - - - - 0.978 - 0.837 heparan sulfate (glucosamine) 3-O-sulfotransferase 1-like 2 [Source:ZFIN;Acc:ZDB-GENE-070202-3]
24. lrrc24 ENSDARG00000101704 224 1.788 - - - - - 0.898 - 0.890 - leucine rich repeat containing 24 [Source:ZFIN;Acc:ZDB-GENE-060503-496]
25. scg5_1 ENSDARG00000032126, ENSDARG00000077045 6 1.78 - - - - - - 1.000 - 0.780 secretogranin V [Source:ZFIN;Acc:ZDB-GENE-040426-1687]
26. ANO8 ANO8 380 1.779 - - - - - - 0.896 0.883 -
27. MSMP ENSDARG00000105581 254 1.772 - 0.914 - - - - 0.858 - - microseminoprotein, prostate associated [Source:HGNC Symbol;Acc:HGNC:29663]
28. kdm5bb ENSDARG00000003098 531 1.771 - - - - - 0.891 - 0.880 - lysine (K)-specific demethylase 5Bb [Source:ZFIN;Acc:ZDB-GENE-030424-1]
29. si:ch211-212k5.2 si:ch211-212k5.2 152 1.771 0.872 - - - - 0.899 - - -
30. celf3b ENSDARG00000006983 171 1.761 0.940 - - 0.821 - - - - - cugbp, Elav-like family member 3b [Source:ZFIN;Acc:ZDB-GENE-110408-50]
31. CT027762.3 CT027762.3 17 1.755 - 1.000 - - - - 0.755 - -
32. CU658147.1 CU658147.1 69 1.755 - 0.901 - - - - 0.854 - -
33. dync2i1 dync2i1 83 1.736 - 0.836 - - - 0.900 - - -
34. si:dkey-14k9.3 ENSDARG00000045595 256 1.732 - - - - - 0.885 0.847 - - si:dkey-14k9.3 [Source:ZFIN;Acc:ZDB-GENE-030131-2893]
35. GABRG1 ENSDARG00000101995 201 1.723 - 1.000 - - - - 0.723 - - gamma-aminobutyric acid type A receptor gamma1 subunit [Source:ZFIN;Acc:ZDB-GENE-141215-66]
36. arhgap19 ENSDARG00000083189 210 1.714 - - - - - 0.862 0.852 - - Rho GTPase activating protein 19 [Source:ZFIN;Acc:ZDB-GENE-100922-157]
37. gaa ENSDARG00000090714 19 1.712 - 0.712 - - - - 1.000 - - glucosidase, alpha; acid (Pompe disease, glycogen storage disease type II) [Source:ZFIN;Acc:ZDB-GENE-070212-2]
38. CU693369.1 CU693369.1 2 1.712 - 0.712 - - - - 1.000 - -
39. rcv1 rcv1 77 1.712 - 0.712 - - - - 1.000 - -
40. drd2a ENSDARG00000056926 40 1.712 - 0.712 - - - - 1.000 - - dopamine receptor D2a [Source:ZFIN;Acc:ZDB-GENE-021119-2]
41. si:ch211-281p14.2 22 1.712 - 0.712 - - - - 1.000 - - si:ch211-281p14.2, transcript variant X2
42. CU459094.1 ENSDARG00000110517 17 1.712 - 0.712 - - - - 1.000 - - uncharacterized LOC108191666 [Source:NCBI gene;Acc:108191666]
43. isl1 ENSDARG00000004023 981 1.702 - 0.908 - - - - 0.794 - - ISL LIM homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-112]
44. C6H22orf23 C6H22orf23 15 1.702 - - - - - 0.702 1.000 - -
45. glrba ENSDARG00000052782, ENSDARG00000117018 4 1.685 0.849 - - - - - 0.836 - - glycine receptor, beta a [Source:ZFIN;Acc:ZDB-GENE-010410-2]
46. synpr ENSDARG00000044278 20 1.681 - - - 0.792 - - - - 0.889 synaptoporin [Source:ZFIN;Acc:ZDB-GENE-030616-625]
47. tfap2d ENSDARG00000023272 308 1.668 - - - - - - - 0.936 0.732 transcription factor AP-2 delta (activating enhancer binding protein 2 delta) [Source:ZFIN;Acc:ZDB-GENE-050913-99]
48. SORT1 SORT1 33 1.665 - 0.823 - - - 0.842 - - -
49. emx3 ENSDARG00000020417 85 1.658 - - 0.716 - - - - - 0.942 empty spiracles homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-990415-53]
50. bcl11ba ENSDARG00000062510 169 1.657 - - 0.908 0.749 - - - - - B cell CLL/lymphoma 11Ba [Source:ZFIN;Acc:ZDB-GENE-061207-62]
51. slain1a ENSDARG00000019185, ENSDARG00000109350, ENSDARG00000112333, ENSDARG00000116098 135 1.655 - - - - - 0.876 0.779 - - SLAIN motif family, member 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7751]
52. CABZ01084613.1 CABZ01084613.1 22 1.647 0.736 - - - - 0.911 - - -
53. SLC2A4RG SLC2A4RG 47 1.635 0.736 - - - - 0.899 - - -
54. dmrta2 ENSDARG00000039412 328 1.633 - - - - - - - 0.905 0.728 DMRT-like family A2 [Source:ZFIN;Acc:ZDB-GENE-041116-2]
55. si:dkey-202i12.5 si:dkey-202i12.5 20 1.629 0.849 - - - - - - - 0.780
56. zgc:193690 34 1.629 0.917 0.712 - - - - - - - zgc:193690
57. epm2a ENSDARG00000059044 10 1.629 0.849 - - - - - - - 0.780 epilepsy, progressive myoclonus type 2A, Lafora disease (laforin) [Source:ZFIN;Acc:ZDB-GENE-100922-143]
58. CU459160.1 CU459160.1 104 1.625 0.789 - - - - - 0.836 - -
59. aldh3b1 ENSDARG00000013839 796 1.625 - - - - - 0.800 - 0.825 - aldehyde dehydrogenase 3 family, member B1 [Source:ZFIN;Acc:ZDB-GENE-021120-3]
60. tfap2e ENSDARG00000008861 497 1.624 - 0.721 - - - - - - 0.903 transcription factor AP-2 epsilon [Source:ZFIN;Acc:ZDB-GENE-040426-1455]
61. slc1a3b ENSDARG00000043148 431 1.621 - 0.712 - - - - - 0.909 - solute carrier family 1 (glial high affinity glutamate transporter), member 3b [Source:ZFIN;Acc:ZDB-GENE-090708-3]
62. pde11al ENSDARG00000006151 70 1.618 - 0.719 - - - 0.899 - - - phosphodiesterase 11a, like [Source:ZFIN;Acc:ZDB-GENE-031118-106]
63. otx2 766 1.617 - - - - - 0.902 - - 0.715 orthodenticle homeobox 2, transcript variant X2
64. muc13a ENSDARG00000069559 985 1.615 0.763 - - - - 0.852 - - - mucin 13a, cell surface associated [Source:ZFIN;Acc:ZDB-GENE-061207-26]
65. adcyap1a ENSDARG00000004015 67 1.614 - 0.712 - - - 0.902 - - - adenylate cyclase activating polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-020809-4]
66. trpc2 trpc2 10 1.608 - - - 0.709 - 0.899 - - -
67. SPIN4 SPIN4 120 1.608 - - - - - 0.772 0.836 - -
68. kcnn1a ENSDARG00000091306 95 1.608 - 0.712 - - - - 0.896 - - potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1a [Source:ZFIN;Acc:ZDB-GENE-070912-703]
69. atad1a ENSDARG00000023267 155 1.607 - - - - - 0.822 0.785 - - ATPase family, AAA domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-030616-593]
70. si:ch73-338a16.3 ENSDARG00000101159 18 1.606 0.736 0.870 - - - - - - - si:ch73-338a16.3 [Source:ZFIN;Acc:ZDB-GENE-120215-227]
71. gpr39 ENSDARG00000102888 46 1.602 0.849 - - - - 0.753 - - - G protein-coupled receptor 39 [Source:ZFIN;Acc:ZDB-GENE-040426-1395]
72. vax2 ENSDARG00000058702 175 1.596 - 0.712 - - - 0.884 - - - ventral anterior homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-030904-8]
73. pkd1b ENSDARG00000033029 461 1.596 - 0.891 - - - - 0.705 - - polycystic kidney disease 1b [Source:ZFIN;Acc:ZDB-GENE-100707-2]
74. tbl3 ENSDARG00000052344 1530 1.588 - - - - - 0.709 - 0.879 - transducin (beta)-like 3 [Source:ZFIN;Acc:ZDB-GENE-041114-104]
75. dnm1b ENSDARG00000009281 219 1.587 - 0.867 - - - 0.720 - - - dynamin 1b [Source:ZFIN;Acc:ZDB-GENE-100920-3]
76. BX571880.1 ENSDARG00000097533 499 1.58 0.849 - 0.731 - - - - - -
77. gpd1l ENSDARG00000040024 2182 1.578 - - - - - 0.715 - 0.863 - glycerol-3-phosphate dehydrogenase 1 like [Source:ZFIN;Acc:ZDB-GENE-041010-220]
78. MPPED1 ENSDARG00000088181 117 1.573 - - - - 0.734 - - - 0.839 metallophosphoesterase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-111104-1]
79. FEZ2_1 FEZ2_1 153 1.565 - - - - - 0.779 0.786 - -
80. nkx2.9 ENSDARG00000020332 357 1.565 - 0.758 - - - - 0.807 - - NK2 transcription factor related, locus 9 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-4340]
81. APEX2 ENSDARG00000008472 7 1.561 0.849 0.712 - - - - - - - APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Source:ZFIN;Acc:ZDB-GENE-040426-835]
82. nlgn2b ENSDARG00000079251, ENSDARG00000111576 179 1.558 - - - - - 0.705 0.853 - - neuroligin 2b [Source:ZFIN;Acc:ZDB-GENE-090918-3]
83. aqp8a.2 ENSDARG00000071592, ENSDARG00000113224 7 1.558 0.849 - - 0.709 - - - - - aquaporin 8a, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-070112-1802]
84. CACNA1H CACNA1H 34 1.557 0.776 - - - 0.781 - - - -
85. zgc:162402 zgc:162402 298 1.553 - - - 0.736 - - 0.817 - -
86. CABZ01087025.1 ENSDARG00000117232 10 1.553 - 0.712 - - - 0.841 - - -
87. fezf2 ENSDARG00000070677 224 1.552 - - 0.823 - - - - - 0.729 FEZ family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-001103-3]
88. cldnj ENSDARG00000058880 59 1.549 - - - 0.741 - 0.808 - - - claudin j [Source:ZFIN;Acc:ZDB-GENE-010328-10]
89. kif5c ENSDARG00000076027 424 1.545 - 0.752 - - - - 0.793 - - kinesin family member 5C [Source:ZFIN;Acc:ZDB-GENE-081105-14]
90. nudt6 ENSDARG00000103523 64 1.545 - 0.712 - - - 0.833 - - - nudix (nucleoside diphosphate linked moiety X)-type motif 6 [Source:ZFIN;Acc:ZDB-GENE-070410-44]
91. si:ch211-120c15.3 ENSDARG00000101807 19 1.541 - 0.712 - 0.829 - - - - - si:ch211-120c15.3 [Source:ZFIN;Acc:ZDB-GENE-110913-99]
92. rasgrp3 ENSDARG00000077864, ENSDARG00000109559, ENSDARG00000116768 111 1.538 - 0.742 - - - 0.796 - - - RAS guanyl releasing protein 3 (calcium and DAG-regulated) [Source:ZFIN;Acc:ZDB-GENE-070424-82]
93. gpm6bb ENSDARG00000001676 2005 1.538 - - - - - 0.723 - 0.815 - glycoprotein M6Bb [Source:ZFIN;Acc:ZDB-GENE-030710-10]
94. UNC13A UNC13A 36 1.534 - - - - 0.755 - 0.779 - -
95. sprn ENSDARG00000056004 128 1.525 - - 0.731 - - - 0.794 - - shadow of prion protein [Source:ZFIN;Acc:ZDB-GENE-031110-1]
96. cx50.5 cx50.5 15 1.52 - - - 0.739 0.781 - - - -
97. arih1l ENSDARG00000036870, ENSDARG00000112965 82 1.51 - 0.712 - - - - 0.798 - - ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 like [Source:ZFIN;Acc:ZDB-GENE-040426-2395]
98. cacna1r cacna1r 16 1.504 - - 0.706 - - - - - 0.798
99. tsen2 ENSDARG00000091851 1467 1.499 - 0.714 - - - 0.785 - - - TSEN2 tRNA splicing endonuclease subunit [Source:ZFIN;Acc:ZDB-GENE-060929-918]
100. CABZ01028287.1 CABZ01028287.1 626 1.498 - - - 0.757 - - 0.741 - -

There are 1946 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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