Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for suds3

Gene Name Gene ID Reads Annotation
suds3 ENSDARG00000073737, ENSDARG00000116918 2416 SDS3 homolog, SIN3A corepressor complex component [Source:ZFIN;Acc:ZDB-GENE-040801-236]










Genes with expression patterns similar to suds3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. suds3 ENSDARG00000073737, ENSDARG00000116918 2416 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SDS3 homolog, SIN3A corepressor complex component [Source:ZFIN;Acc:ZDB-GENE-040801-236]
2. VPS37B_1 VPS37B_1 1816 2.725 - - 0.780 - 0.988 - 0.957 - -
3. GATAD2B ENSDARG00000005834 3855 2.684 0.876 0.984 - - - 0.824 - - - GATA zinc finger domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-060503-655]
4. gmps ENSDARG00000079848 8217 2.65 - 0.852 - - 0.852 - 0.946 - - guanine monophosphate synthase [Source:ZFIN;Acc:ZDB-GENE-040426-1503]
5. uhrf1 ENSDARG00000103409 3282 2.54 - - 0.822 - - 0.734 0.984 - - ubiquitin-like with PHD and ring finger domains 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2039]
6. CASK CASK 1750 2.506 - 0.989 0.806 0.711 - - - - -
7. gsk3ab ENSDARG00000015681 1322 2.221 0.792 - - 0.722 - 0.707 - - - glycogen synthase kinase 3 alpha b [Source:ZFIN;Acc:ZDB-GENE-990714-3]
8. bin2b ENSDARG00000010255 2649 1.963 - - - - 0.990 - 0.973 - - bridging integrator 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5598]
9. trpc4apa ENSDARG00000018840 2543 1.963 - 0.979 - - 0.984 - - - - transient receptor potential cation channel, subfamily C, member 4 associated protein a [Source:ZFIN;Acc:ZDB-GENE-000330-3]
10. nrg2a ENSDARG00000077818 854 1.96 - - - - 0.990 - 0.970 - - neuregulin 2a [Source:ZFIN;Acc:ZDB-GENE-070615-10]
11. cdc14b ENSDARG00000021483 4958 1.957 - 0.989 - - - - 0.968 - - cell division cycle 14B [Source:ZFIN;Acc:ZDB-GENE-040426-820]
12. RNF111 ENSDARG00000078802 1357 1.952 - - - - 0.992 - 0.960 - - ring finger protein 111 [Source:ZFIN;Acc:ZDB-GENE-070808-2]
13. dnttip2 ENSDARG00000057648 2381 1.941 - - - - 0.958 - 0.983 - - deoxynucleotidyltransferase, terminal, interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080513-5]
14. ifrd1 ENSDARG00000068708 2858 1.926 - - - - 0.986 - 0.940 - - interferon-related developmental regulator 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6132]
15. rab11a ENSDARG00000041450, ENSDARG00000109465 7418 1.914 - 0.980 - - 0.934 - - - - RAB11a, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-041114-53]
16. atg16l1 ENSDARG00000099430 924 1.892 0.903 0.989 - - - - - - - ATG16 autophagy related 16-like 1 (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050417-401]
17. znf385a ENSDARG00000009899 3433 1.884 - 0.958 - - - - 0.926 - - zinc finger protein 385A [Source:ZFIN;Acc:ZDB-GENE-090313-255]
18. asb6 ENSDARG00000007125 389 1.879 0.903 - - - - - 0.976 - - ankyrin repeat and SOCS box containing 6 [Source:ZFIN;Acc:ZDB-GENE-050522-338]
19. zgc:163098 ENSDARG00000078911, ENSDARG00000111691, ENSDARG00000113714, ENSDARG00000115110 1802 1.877 0.885 - - - 0.992 - - - - zgc:163098 [Source:ZFIN;Acc:ZDB-GENE-070410-141]
20. arl6ip1 ENSDARG00000054578, ENSDARG00000112340 11714 1.872 - 0.935 - - 0.937 - - - - ADP-ribosylation factor-like 6 interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1087]
21. dyrk1b ENSDARG00000070187 2777 1.871 0.901 - - - - - 0.970 - - dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B [Source:ZFIN;Acc:ZDB-GENE-060503-499]
22. NDUFA3 ENSDARG00000041400 7939 1.86 - - - - 0.959 - 0.901 - - NADH:ubiquinone oxidoreductase subunit A3 [Source:ZFIN;Acc:ZDB-GENE-040801-18]
23. rad51 ENSDARG00000041411, ENSDARG00000111948 1056 1.838 0.871 - - - - - 0.967 - - RAD51 recombinase [Source:ZFIN;Acc:ZDB-GENE-040426-2286]
24. PVRL4 1691 1.834 - - 0.887 - - - 0.947 - - poliovirus receptor-related 4
25. sigmar1 ENSDARG00000011418 1240 1.828 0.853 - - - - - 0.975 - - sigma non-opioid intracellular receptor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1006]
26. FUCA1 FUCA1 1446 1.816 0.866 - - - - - 0.950 - -
27. suz12b ENSDARG00000098924, ENSDARG00000114239, ENSDARG00000114524 1947 1.812 0.895 - - - - - 0.917 - - SUZ12, polycomb repressive complex 2 subunit b [Source:ZFIN;Acc:ZDB-GENE-030131-3255]
28. wu:fb12e11 wu:fb12e11 2332 1.812 0.823 0.989 - - - - - - -
29. arl14ep ENSDARG00000001210 3029 1.811 0.822 - - - 0.989 - - - - ADP-ribosylation factor-like 14 effector protein [Source:ZFIN;Acc:ZDB-GENE-060825-216]
30. vps25 ENSDARG00000059079 3747 1.809 - 0.831 - - 0.978 - - - - vacuolar protein sorting 25 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050506-30]
31. ap1s1 ENSDARG00000056803 3854 1.805 - - 0.835 - - - 0.970 - - adaptor related protein complex 1 subunit sigma 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1119]
32. nabp1a ENSDARG00000004692, ENSDARG00000115485 1843 1.8 - 0.983 0.817 - - - - - - nucleic acid binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-041212-71]
33. hccs hccs 1758 1.792 - 0.986 0.806 - - - - - -
34. rybpb ENSDARG00000053459 1464 1.792 - - - - - 0.820 0.972 - - RING1 and YY1 binding protein b [Source:ZFIN;Acc:ZDB-GENE-061103-96]
35. ppp3r1a ENSDARG00000092659 9729 1.791 - 0.928 - - - - 0.863 - - protein phosphatase 3, regulatory subunit B, alpha a [Source:ZFIN;Acc:ZDB-GENE-081113-3]
36. NBEAL1 ENSDARG00000099547 1112 1.789 0.819 - - - - - 0.970 - - neurobeachin-like 1 [Source:ZFIN;Acc:ZDB-GENE-130530-544]
37. nup107 ENSDARG00000016010 1043 1.784 - - 0.815 - - - 0.969 - - nucleoporin 107 [Source:ZFIN;Acc:ZDB-GENE-041210-245]
38. bcl6a ENSDARG00000070864, ENSDARG00000111395, ENSDARG00000112502, ENSDARG00000116260 657 1.776 - 0.989 0.787 - - - - - - B-cell CLL/lymphoma 6a (zinc finger protein 51) [Source:ZFIN;Acc:ZDB-GENE-040426-1696]
39. itpkcb ENSDARG00000067741 2370 1.775 0.814 - - - - - 0.961 - - inositol-trisphosphate 3-kinase Cb [Source:ZFIN;Acc:ZDB-GENE-080225-27]
40. FP236813.1 FP236813.1 1842 1.77 - 0.981 0.789 - - - - - -
41. safb ENSDARG00000020467 5608 1.77 0.803 - - - - - 0.967 - - scaffold attachment factor B [Source:ZFIN;Acc:ZDB-GENE-030131-698]
42. CABZ01068263.1 CABZ01068263.1 712 1.766 - - 0.788 - - - 0.978 - -
43. rrm2_1 ENSDARG00000020711, ENSDARG00000078069 11634 1.766 - 0.969 - - - - 0.797 - - ribonucleotide reductase M2 polypeptide [Source:ZFIN;Acc:ZDB-GENE-990415-25]
44. arglu1a ENSDARG00000019223 8716 1.765 - - - - 0.948 0.817 - - - arginine and glutamate rich 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2914]
45. mllt10 ENSDARG00000045401 7557 1.764 - - - - 0.941 0.823 - - - MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:ZFIN;Acc:ZDB-GENE-041114-176]
46. slc38a5a ENSDARG00000009901 2527 1.763 - - - - 0.979 0.784 - - - solute carrier family 38, member 5a [Source:ZFIN;Acc:ZDB-GENE-081105-92]
47. wdr82 ENSDARG00000014083 3159 1.762 - - - - - 0.783 0.979 - - WD repeat domain 82 [Source:ZFIN;Acc:ZDB-GENE-030131-333]
48. si:ch211-241o7.5 si:ch211-241o7.5 1387 1.761 - - 0.782 - - - 0.979 - -
49. socs5a ENSDARG00000100717 6927 1.76 - - 0.777 - - - 0.983 - - suppressor of cytokine signaling 5a [Source:ZFIN;Acc:ZDB-GENE-061013-408]
50. arhgef1b ENSDARG00000055837 2330 1.759 0.775 0.984 - - - - - - - Rho guanine nucleotide exchange factor (GEF) 1b [Source:ZFIN;Acc:ZDB-GENE-060616-136]
51. prkaa1 ENSDARG00000060596 1448 1.759 - - 0.788 - - - 0.971 - - protein kinase, AMP-activated, alpha 1 catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-030325-1]
52. ERO1LB ERO1LB 1433 1.757 - - 0.768 - 0.989 - - - -
53. psme4b ENSDARG00000018742, ENSDARG00000112854, ENSDARG00000114902 2916 1.756 - 0.984 0.772 - - - - - - proteasome activator subunit 4b [Source:ZFIN;Acc:ZDB-GENE-100316-4]
54. smim7 ENSDARG00000074848 1260 1.754 - - 0.768 - 0.986 - - - - small integral membrane protein 7 [Source:ZFIN;Acc:ZDB-GENE-060810-180]
55. fzr1 fzr1 2984 1.749 0.773 - - - - - 0.976 - -
56. fbxo30a ENSDARG00000058561 867 1.749 - - 0.779 - - - 0.970 - - F-box protein 30a [Source:ZFIN;Acc:ZDB-GENE-040426-1215]
57. gigfy2 3194 1.743 0.792 - - - - - 0.951 - - GRB10 interacting GYF protein 2, transcript variant X1
58. MAP4K4 ENSDARG00000098670 4665 1.743 - 0.985 - - - 0.758 - - - mitogen-activated protein kinase kinase kinase kinase 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6722]
59. zc3h15 ENSDARG00000015889 3861 1.742 - 0.995 0.747 - - - - - - zinc finger CCCH-type containing 15 [Source:ZFIN;Acc:ZDB-GENE-030131-6239]
60. etfdh ENSDARG00000038834 1811 1.739 0.772 - - - - - 0.967 - - electron transfer flavoprotein dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-040912-168]
61. PSD PSD 367 1.736 0.761 - - - - - 0.975 - -
62. hcfc1b ENSDARG00000012519 3633 1.733 - - - - 0.987 0.746 - - - host cell factor C1b [Source:ZFIN;Acc:ZDB-GENE-030131-2411]
63. ptpn13 ENSDARG00000103699 2866 1.731 - 0.980 - - - 0.751 - - - protein tyrosine phosphatase, non-receptor type 13 [Source:ZFIN;Acc:ZDB-GENE-070410-72]
64. pho ENSDARG00000035133 670 1.73 0.909 - 0.821 - - - - - - phoenix [Source:ZFIN;Acc:ZDB-GENE-030131-5935]
65. nfil3 ENSDARG00000042977, ENSDARG00000110085 1565 1.725 - 0.980 - - - - - 0.745 - nuclear factor, interleukin 3 regulated [Source:ZFIN;Acc:ZDB-GENE-040822-28]
66. acbd6 ENSDARG00000039456 2355 1.723 0.734 - - - 0.989 - - - - acyl-CoA binding domain containing 6 [Source:ZFIN;Acc:ZDB-GENE-030131-2810]
67. anapc16 ENSDARG00000013822 5857 1.721 0.743 0.978 - - - - - - - anaphase promoting complex subunit 16 [Source:ZFIN;Acc:ZDB-GENE-050417-430]
68. aldh2.1 ENSDARG00000089924 2883 1.719 - 0.985 - - - - 0.734 - - aldehyde dehydrogenase 2 family member, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1262]
69. syap1 ENSDARG00000012946 3560 1.716 - 0.960 0.756 - - - - - - synapse associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-917]
70. ncapg2 ENSDARG00000060023 993 1.714 - - - - - - 0.965 0.749 - non-SMC condensin II complex, subunit G2 [Source:ZFIN;Acc:ZDB-GENE-070410-100]
71. cops7a ENSDARG00000022788, ENSDARG00000112421 5302 1.714 - 0.968 - - - 0.746 - - - COP9 constitutive photomorphogenic homolog subunit 7A [Source:ZFIN;Acc:ZDB-GENE-030131-8680]
72. kdm4b ENSDARG00000099675 2037 1.714 - - - - - 0.742 0.972 - - lysine (K)-specific demethylase 4B [Source:ZFIN;Acc:ZDB-GENE-060503-664]
73. CR293507.1 ENSDARG00000112572 3198 1.714 - 0.990 - - - 0.724 - - -
74. kansl3 ENSDARG00000029556 2487 1.712 - - - - - 0.733 0.979 - - KAT8 regulatory NSL complex subunit 3 [Source:ZFIN;Acc:ZDB-GENE-050809-132]
75. sp1 ENSDARG00000088347 1697 1.711 - - - - - 0.780 0.931 - - sp1 transcription factor [Source:ZFIN;Acc:ZDB-GENE-030131-2829]
76. myof ENSDARG00000006112 618 1.711 0.760 - - - - - 0.951 - - myoferlin [Source:ZFIN;Acc:ZDB-GENE-040426-1138]
77. srcap ENSDARG00000005236 1740 1.711 - - - - 0.991 0.720 - - - Snf2-related CREBBP activator protein [Source:ZFIN;Acc:ZDB-GENE-041008-127]
78. otub1a ENSDARG00000055536 2892 1.71 0.729 0.981 - - - - - - - OTU deubiquitinase, ubiquitin aldehyde binding 1a [Source:ZFIN;Acc:ZDB-GENE-040718-108]
79. dpm3 ENSDARG00000058650 4386 1.707 - - - - - 0.785 0.922 - - dolichyl-phosphate mannosyltransferase polypeptide 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1782]
80. rnaseh2a ENSDARG00000018891 1979 1.702 0.912 - - - - - - 0.790 - ribonuclease H2, subunit A [Source:ZFIN;Acc:ZDB-GENE-040426-976]
81. glyr1 ENSDARG00000099213 6906 1.701 - - - - - - 0.950 0.751 - glyoxylate reductase 1 homolog (Arabidopsis) [Source:ZFIN;Acc:ZDB-GENE-041121-5]
82. klf6a ENSDARG00000029072 3758 1.7 - 0.986 0.714 - - - - - - Kruppel-like factor 6a [Source:ZFIN;Acc:ZDB-GENE-021115-9]
83. clptm1l ENSDARG00000021048 1234 1.7 - - 0.743 - - - 0.957 - - CLPTM1-like [Source:ZFIN;Acc:ZDB-GENE-040718-75]
84. pak2a ENSDARG00000068177 8931 1.699 - - 0.790 - 0.909 - - - - p21 protein (Cdc42/Rac)-activated kinase 2a [Source:ZFIN;Acc:ZDB-GENE-021011-2]
85. rnd3a ENSDARG00000076799 4705 1.699 - - 0.711 - 0.988 - - - - Rho family GTPase 3a [Source:ZFIN;Acc:ZDB-GENE-010319-40]
86. abcb7 ENSDARG00000062795 1404 1.696 0.762 - - - - - 0.934 - - ATP-binding cassette, sub-family B (MDR/TAP), member 7 [Source:ZFIN;Acc:ZDB-GENE-050517-10]
87. mtdha ENSDARG00000014159, ENSDARG00000115030 9903 1.696 - 0.894 - - - 0.802 - - - metadherin a [Source:ZFIN;Acc:ZDB-GENE-030616-615]
88. rock1 ENSDARG00000058993 2603 1.696 0.713 0.983 - - - - - - - Rho-associated, coiled-coil containing protein kinase 1 [Source:ZFIN;Acc:ZDB-GENE-100712-2]
89. fzd7b ENSDARG00000027589 2562 1.694 0.888 - - - - 0.806 - - - frizzled class receptor 7b [Source:ZFIN;Acc:ZDB-GENE-990415-229]
90. mpzl3 959 1.694 0.740 - - - - - 0.954 - - myelin protein zero-like 3
91. etnk1 ENSDARG00000019420 2166 1.693 - - 0.763 - - - 0.930 - - ethanolamine kinase 1 [Source:ZFIN;Acc:ZDB-GENE-030328-21]
92. NID1 NID1 6192 1.692 - 0.962 - - - - 0.730 - -
93. strada ENSDARG00000037929 1614 1.688 0.892 - 0.796 - - - - - - ste20-related kinase adaptor alpha [Source:ZFIN;Acc:ZDB-GENE-030131-6482]
94. brf1a ENSDARG00000017835 206 1.687 0.879 - 0.808 - - - - - - BRF1, RNA polymerase III transcription initiation factor a [Source:ZFIN;Acc:ZDB-GENE-030131-6334]
95. agrn ENSDARG00000079388, ENSDARG00000110127 5806 1.687 - 0.952 - - - 0.735 - - - agrin [Source:ZFIN;Acc:ZDB-GENE-030131-1033]
96. notch3 ENSDARG00000052139 15033 1.686 - 0.964 - - - - 0.722 - - notch 3 [Source:ZFIN;Acc:ZDB-GENE-000329-5]
97. si:dkey-228b2.5 1760 1.683 - - - - 0.983 0.700 - - - si:dkey-228b2.5
98. CR387996.1 ENSDARG00000097774 3037 1.682 0.899 - - - - 0.783 - - -
99. cul4b ENSDARG00000060510 6053 1.681 - 0.970 - - - 0.711 - - - cullin 4B [Source:ZFIN;Acc:ZDB-GENE-041008-208]
100. ddb1 ENSDARG00000074431 1054 1.679 - - - - - - 0.969 - 0.710 damage-specific DNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1272]

There are 1838 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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