Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for ssr4

Gene Name Gene ID Reads Annotation
ssr4 ENSDARG00000019444 20207 signal sequence receptor, delta [Source:ZFIN;Acc:ZDB-GENE-030131-4900]










Genes with expression patterns similar to ssr4

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ssr4 ENSDARG00000019444 20207 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 signal sequence receptor, delta [Source:ZFIN;Acc:ZDB-GENE-030131-4900]
2. ssr2 ENSDARG00000005230 31940 3.324 - - 0.791 - - - 0.912 0.705 0.916 signal sequence receptor, beta [Source:ZFIN;Acc:ZDB-GENE-010413-1]
3. sec61b ENSDARG00000076568 11859 2.34 - - - - 0.753 0.852 - 0.735 - Sec61 translocon beta subunit [Source:ZFIN;Acc:ZDB-GENE-040718-260]
4. furina ENSDARG00000062909, ENSDARG00000117158 6313 2.328 - - - - - 0.729 0.756 - 0.843 furin (paired basic amino acid cleaving enzyme) a [Source:ZFIN;Acc:ZDB-GENE-040901-1]
5. kdelr2a ENSDARG00000005254 13871 2.327 - - - 0.786 0.766 - - - 0.775 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2a [Source:ZFIN;Acc:ZDB-GENE-030826-32]
6. fbxo28 ENSDARG00000027159 9602 2.25 0.737 - - - - 0.794 0.719 - - F-box protein 28 [Source:ZFIN;Acc:ZDB-GENE-030131-4665]
7. xbp1 ENSDARG00000035622 18416 2.248 - - 0.754 - 0.735 - 0.759 - - X-box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-011210-2]
8. kdelr2b ENSDARG00000037361 8410 1.689 - - - - - - 0.818 - 0.871 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-4189]
9. capn2a ENSDARG00000091699 5924 1.645 - - - - - - 0.752 - 0.893 calpain 2, (m/II) large subunit a [Source:ZFIN;Acc:ZDB-GENE-050320-69]
10. capn9 ENSDARG00000012341 12911 1.644 - - 0.813 - - - 0.831 - - calpain 9 [Source:ZFIN;Acc:ZDB-GENE-010724-2]
11. hao1 ENSDARG00000024160 6104 1.639 0.819 - - - - - 0.820 - - hydroxyacid oxidase (glycolate oxidase) 1 [Source:ZFIN;Acc:ZDB-GENE-060519-2]
12. emilin3a ENSDARG00000078052 1652 1.633 - - 0.836 - - - - - 0.797 elastin microfibril interfacer 3a [Source:ZFIN;Acc:ZDB-GENE-080612-2]
13. uchl3 ENSDARG00000030177, ENSDARG00000109434 2843 1.632 - - 0.800 - - - - - 0.832 ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) [Source:ZFIN;Acc:ZDB-GENE-050522-158]
14. si:ch73-7i4.1 ENSDARG00000094554 771 1.625 - - 0.790 - - - - - 0.835 si:ch73-7i4.1 [Source:ZFIN;Acc:ZDB-GENE-100921-19]
15. serpinh1b ENSDARG00000019949 11693 1.622 - - 0.839 - - - - - 0.783 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b [Source:ZFIN;Acc:ZDB-GENE-990415-93]
16. anapc16 ENSDARG00000013822 5857 1.615 - - - - - 0.758 - - 0.857 anaphase promoting complex subunit 16 [Source:ZFIN;Acc:ZDB-GENE-050417-430]
17. ATOX1 ENSDARG00000087693 4016 1.612 - - 0.813 - - 0.799 - - - antioxidant 1 copper chaperone [Source:ZFIN;Acc:ZDB-GENE-120720-2]
18. plekhh1 ENSDARG00000053835 2123 1.6 - - 0.800 - - - - - 0.800 pleckstrin homology domain containing, family H (with MyTH4 domain) member 1 [Source:ZFIN;Acc:ZDB-GENE-061219-1]
19. anxa1b ENSDARG00000100095 7763 1.599 0.714 - - - - - 0.885 - - annexin A1b [Source:ZFIN;Acc:ZDB-GENE-030131-6554]
20. sec31a ENSDARG00000021082, ENSDARG00000111434, ENSDARG00000114514 6991 1.596 0.791 - 0.805 - - - - - - SEC31 homolog A, COPII coat complex component [Source:ZFIN;Acc:ZDB-GENE-020919-2]
21. s100u ENSDARG00000071014 4754 1.569 - - 0.819 - - 0.750 - - - S100 calcium binding protein U [Source:ZFIN;Acc:ZDB-GENE-030131-3121]
22. ARF5 ENSDARG00000070472, ENSDARG00000115687 6101 1.569 - - - - - 0.785 - - 0.784 ADP-ribosylation factor 5 [Source:ZFIN;Acc:ZDB-GENE-030910-5]
23. ufm1 ENSDARG00000043857 4152 1.568 - - - - - - 0.723 - 0.845 ubiquitin-fold modifier 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2930]
24. psmd12 ENSDARG00000052377 7763 1.563 - - 0.701 - - - - - 0.862 proteasome 26S subunit, non-ATPase 12 [Source:ZFIN;Acc:ZDB-GENE-030131-617]
25. gnmt ENSDARG00000006840 2422 1.556 - - - - - - 0.772 - 0.784 glycine N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-040227-1]
26. atp6v0ca ENSDARG00000057853 23277 1.556 - 0.822 - - - 0.734 - - - ATPase H+ transporting V0 subunit ca [Source:ZFIN;Acc:ZDB-GENE-020419-23]
27. ywhaqa ENSDARG00000042539 7034 1.554 - - 0.765 - - - - - 0.789 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide a [Source:ZFIN;Acc:ZDB-GENE-040122-5]
28. plscr3b ENSDARG00000069432 8500 1.549 0.720 - 0.829 - - - - - - phospholipid scramblase 3b [Source:ZFIN;Acc:ZDB-GENE-040426-2517]
29. efhd2 ENSDARG00000055759 7777 1.542 - - - - - 0.710 0.832 - - EF-hand domain family, member D2 [Source:ZFIN;Acc:ZDB-GENE-060531-152]
30. atp1b3a ENSDARG00000015790 12310 1.537 - - - - - 0.735 0.802 - - ATPase Na+/K+ transporting subunit beta 3a [Source:ZFIN;Acc:ZDB-GENE-990415-167]
31. bhmt ENSDARG00000013430 91357 1.537 0.779 - - - - - 0.758 - - betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
32. ywhaz ENSDARG00000032575 15257 1.523 - - 0.720 - - - - - 0.803 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:ZFIN;Acc:ZDB-GENE-030131-8554]
33. p4ha1b ENSDARG00000071082, ENSDARG00000112774 3198 1.517 - - - - - 0.708 - - 0.809 prolyl 4-hydroxylase, alpha polypeptide I b [Source:ZFIN;Acc:ZDB-GENE-030131-4089]
34. ist1 ENSDARG00000051888 4536 1.512 0.700 - - - - - - - 0.812 increased sodium tolerance 1 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-179]
35. fkbp11 ENSDARG00000037000, ENSDARG00000111059 2888 1.51 0.782 - - - - - 0.728 - - FK506 binding protein 11 [Source:ZFIN;Acc:ZDB-GENE-030616-357]
36. aldh9a1a.1 ENSDARG00000069100, ENSDARG00000114905 30071 1.5 0.766 - - - - - 0.734 - - aldehyde dehydrogenase 9 family, member A1a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1257]
37. gsnb ENSDARG00000045262 4382 1.487 - - - - - 0.752 0.735 - - gelsolin b [Source:ZFIN;Acc:ZDB-GENE-030131-8567]
38. vasp vasp 3925 1.483 - - - - - - 0.731 - 0.752
39. si:ch211-233g6.8 si:ch211-233g6.8 1005 1.48 - - - - - 0.770 0.710 - -
40. calrl calrl 16799 1.469 - - - - - 0.754 - - 0.715
41. C1H4orf33 C1H4orf33 2097 1.468 - - - - - 0.746 0.722 - -
42. igfbp2a ENSDARG00000052470, ENSDARG00000111105 1939 1.467 - - - - - 0.719 0.748 - - insulin-like growth factor binding protein 2a [Source:ZFIN;Acc:ZDB-GENE-000125-12]
43. arpc4 ENSDARG00000054063 6150 1.462 0.706 - - - - - 0.756 - - actin related protein 2/3 complex, subunit 4 [Source:ZFIN;Acc:ZDB-GENE-010724-9]
44. pdlim1 ENSDARG00000019845 5765 1.456 - - - - - 0.705 0.751 - - PDZ and LIM domain 1 (elfin) [Source:ZFIN;Acc:ZDB-GENE-030131-5227]
45. tegt ENSDARG00000077934 27182 1.45 - 0.721 - - - 0.729 - - - testis enhanced gene transcript (BAX inhibitor 1) [Source:ZFIN;Acc:ZDB-GENE-030826-10]
46. rer1 ENSDARG00000012747 6939 1.439 - 0.714 - - - - 0.725 - - retention in endoplasmic reticulum sorting receptor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1494]
47. oclna ENSDARG00000005108 3280 1.423 - - - - - 0.701 0.722 - - occludin a [Source:ZFIN;Acc:ZDB-GENE-040426-2685]
48. CU914813.1 CU914813.1 29656 1.423 - - - - - - - 0.713 0.710
49. fga ENSDARG00000020741 5580 1.423 0.718 - - - - - 0.705 - - fibrinogen alpha chain [Source:ZFIN;Acc:ZDB-GENE-031010-21]
50. glula ENSDARG00000099776 14156 1.421 - 0.717 - - - - 0.704 - - glutamate-ammonia ligase (glutamine synthase) a [Source:ZFIN;Acc:ZDB-GENE-030131-688]
51. vps4b ENSDARG00000069175 1922 1.415 - - - - - 0.713 0.702 - - vacuolar protein sorting 4b homolog B (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040426-1235]
52. si:ch211-157c3.4 ENSDARG00000087093 22736 0.918 - 0.918 - - - - - - - si:ch211-157c3.4 [Source:ZFIN;Acc:ZDB-GENE-030131-8454]
53. waslb ENSDARG00000006283 2160 0.908 - - - - - - - - 0.908 Wiskott-Aldrich syndrome-like b [Source:ZFIN;Acc:ZDB-GENE-040426-718]
54. cdh2 ENSDARG00000018693, ENSDARG00000117201 9869 0.905 - 0.905 - - - - - - - cadherin 2, type 1, N-cadherin (neuronal) [Source:ZFIN;Acc:ZDB-GENE-990415-171]
55. edem1 ENSDARG00000025094 1343 0.9 - - - - - - - - 0.900 ER degradation enhancer, mannosidase alpha-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-808]
56. tram1 ENSDARG00000019137, ENSDARG00000109629 8309 0.898 - - - - - 0.898 - - - translocation associated membrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-021011-1]
57. yipf3 ENSDARG00000020449 3312 0.897 - - - - - - - - 0.897 Yip1 domain family, member 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6443]
58. cldn7b ENSDARG00000014047, ENSDARG00000114912 2960 0.894 - - - - - - - - 0.894 claudin 7b [Source:ZFIN;Acc:ZDB-GENE-001103-5]
59. ube2i ube2i 13024 0.892 - 0.892 - - - - - - -
60. C7H20orf27 C7H20orf27 1864 0.89 - - - - - - - - 0.890
61. copa ENSDARG00000004173 3977 0.888 - - - - - - - - 0.888 coatomer protein complex, subunit alpha [Source:ZFIN;Acc:ZDB-GENE-020905-2]
62. scinla ENSDARG00000102415, ENSDARG00000117110 1996 0.885 - - - - - - - - 0.885 scinderin like a [Source:ZFIN;Acc:ZDB-GENE-030131-2005]
63. cnksr1 ENSDARG00000032932, ENSDARG00000109531 2272 0.884 - - - - - - - - 0.884 connector enhancer of kinase suppressor of Ras 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1802]
64. sly1 sly1 2403 0.88 - - - - - - - - 0.880
65. sec62 ENSDARG00000019951 3724 0.88 - - - - - - - - 0.880 SEC62 homolog, preprotein translocation factor [Source:ZFIN;Acc:ZDB-GENE-050913-83]
66. mpc2 ENSDARG00000024478 16959 0.879 - - - - - - 0.879 - - mitochondrial pyruvate carrier 2 [Source:ZFIN;Acc:ZDB-GENE-030131-330]
67. lman1 ENSDARG00000069980 2550 0.878 - - - - - - - - 0.878 lectin, mannose-binding, 1 [Source:ZFIN;Acc:ZDB-GENE-060201-4]
68. srsf1a ENSDARG00000057691, ENSDARG00000111226 15525 0.876 - 0.876 - - - - - - - serine/arginine-rich splicing factor 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1950]
69. alg2 ENSDARG00000070399 772 0.876 - - - - - - - - 0.876 asparagine-linked glycosylation 2 (alpha-1,3-mannosyltransferase) [Source:ZFIN;Acc:ZDB-GENE-060502-2]
70. isca1 ENSDARG00000051956 5855 0.873 - - - - - - 0.873 - - iron-sulfur cluster assembly 1 [Source:ZFIN;Acc:ZDB-GENE-050626-94]
71. sdr16c5a ENSDARG00000016233 2413 0.872 - - - - - - - - 0.872 short chain dehydrogenase/reductase family 16C, member 5a [Source:ZFIN;Acc:ZDB-GENE-040426-2049]
72. alg5 ENSDARG00000021938, ENSDARG00000061235 2279 0.872 - - - - - - - - 0.872 asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase) [Source:ZFIN;Acc:ZDB-GENE-030131-6586]
73. SERTAD4 ENSDARG00000089795 791 0.87 - - - - - - - - 0.870 SERTA domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-090313-199]
74. wnk1b ENSDARG00000039392 3587 0.869 - - - - - - - - 0.869 WNK lysine deficient protein kinase 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2656]
75. zfand5a ENSDARG00000018898 3308 0.868 - - - - - - - - 0.868 zinc finger, AN1-type domain 5a [Source:ZFIN;Acc:ZDB-GENE-040426-1979]
76. glud1a ENSDARG00000008816, ENSDARG00000114252 3468 0.867 - - - - - - - - 0.867 glutamate dehydrogenase 1a [Source:ZFIN;Acc:ZDB-GENE-030114-2]
77. hif1ab ENSDARG00000034293 10284 0.867 - - - - - - - - 0.867 hypoxia inducible factor 1 subunit alpha b [Source:ZFIN;Acc:ZDB-GENE-040426-706]
78. dao.1 ENSDARG00000035602 11969 0.867 - - - - - - 0.867 - - D-amino-acid oxidase, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050913-127]
79. cnpy1 ENSDARG00000003757 1132 0.865 - - - - - - - - 0.865 canopy FGF signaling regulator 1 [Source:ZFIN;Acc:ZDB-GENE-060315-3]
80. fam101b 398 0.865 - - - - - - - - 0.865 family with sequence similarity 101, member B
81. taf10 ENSDARG00000068641 3333 0.864 - - - - - - - - 0.864 TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-060526-334]
82. reep3 reep3 2536 0.862 - - - - - - - - 0.862
83. nucks1b ENSDARG00000012777 4468 0.862 - - - - - - - - 0.862 nuclear casein kinase and cyclin-dependent kinase substrate 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4544]
84. qdpra ENSDARG00000040190 4064 0.862 - - - - - - - - 0.862 quinoid dihydropteridine reductase a [Source:ZFIN;Acc:ZDB-GENE-070705-197]
85. strbp ENSDARG00000021455 1279 0.86 - - - - - - - - 0.860 spermatid perinuclear RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030729-18]
86. cope ENSDARG00000018562 17276 0.86 - - - - - - - - 0.860 coatomer protein complex, subunit epsilon [Source:ZFIN;Acc:ZDB-GENE-041114-59]
87. BX511121.1 ENSDARG00000029997 1774 0.86 - - - - - - - - 0.860
88. cpne1 ENSDARG00000075536 4063 0.859 - - - - - - - - 0.859 copine I [Source:ZFIN;Acc:ZDB-GENE-030131-3562]
89. rpl31 ENSDARG00000053365 55475 0.858 - 0.858 - - - - - - - ribosomal protein L31 [Source:ZFIN;Acc:ZDB-GENE-060331-121]
90. qars ENSDARG00000010316 2715 0.858 - - - - - - - - 0.858 glutaminyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-040426-1011]
91. cdk11b ENSDARG00000102546 1579 0.858 - - - - - - - - 0.858 cyclin-dependent kinase 11B [Source:ZFIN;Acc:ZDB-GENE-041212-74]
92. si:dkey-13i19.8 ENSDARG00000093058 4617 0.857 - - - - - - - - 0.857 si:dkey-13i19.8 [Source:ZFIN;Acc:ZDB-GENE-041210-156]
93. mfap2 ENSDARG00000059367 3774 0.856 - - - - - - - - 0.856 microfibril associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6710]
94. mapk14a ENSDARG00000000857, ENSDARG00000112397 1743 0.856 - - - - - - - - 0.856 mitogen-activated protein kinase 14a [Source:ZFIN;Acc:ZDB-GENE-010202-2]
95. prrg4 ENSDARG00000030753 1008 0.855 - - - - - - - - 0.855 proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane) [Source:ZFIN;Acc:ZDB-GENE-050417-112]
96. ehd3 ENSDARG00000007869 3238 0.855 - - - - - - - - 0.855 EH-domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-041014-352]
97. dusp11 ENSDARG00000038156 2490 0.852 - - - - - - - - 0.852 dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) [Source:ZFIN;Acc:ZDB-GENE-050417-226]
98. ptgs2a ENSDARG00000004539 1207 0.852 - - - - - - - - 0.852 prostaglandin-endoperoxide synthase 2a [Source:ZFIN;Acc:ZDB-GENE-020530-2]
99. arf5 ENSDARG00000070472, ENSDARG00000115687 12490 0.851 - - - - - 0.851 - - - ADP-ribosylation factor 5 [Source:ZFIN;Acc:ZDB-GENE-030910-5]
100. churc1 ENSDARG00000010831, ENSDARG00000113360 1271 0.85 - - - - - - - - 0.850 churchill domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041001-150]

There are 698 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA